mRNA_F-serratus_M_contig6729.17758.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6729.17758.1
Unique NamemRNA_F-serratus_M_contig6729.17758.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 7.350e-56
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            MGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA N+VY+NVNHGIIA
Sbjct:  159 MGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIA 259
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.130e-54
Identity = 85/101 (84.16%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            + YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA NEVY+NVNHGIIA
Sbjct:  599 IAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIA 699
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.660e-54
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIA 261
            MGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIA
Sbjct:  127 MGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIA 213
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.350e-51
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            +G++G+F SESYG+TWKVRGFC D SNPEVFD  NVYGDI N DIHHM+YGMYSYGHQGGVWT++ MHDN+ YGFDPHDDSDYLTI NN V++N NHGIIA
Sbjct:  242 LGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMHDNYVYGFDPHDDSDYLTIRNNTVWNNKNHGIIA 342
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.150e-49
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMH---DNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            +G++G+F SESYG+TWKVRGFC D SNPEVFD  NVYGDI N DIHHM+YGMYSYGHQGGVWT++ MH   DN+ YGFDPHDDSDYLTI NN V++N  HGIIA
Sbjct:  307 LGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMHGEDDNYVYGFDPHDDSDYLTIRNNTVWNNKKHGIIA 410
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.000e-48
Identity = 79/105 (75.24%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT------------IANNEVYD 279
            +GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT            I NNEVYD
Sbjct:  236 IGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD 340
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.160e-48
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            +GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +NEVY+N  HGIIA
Sbjct:  212 IGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIA 312
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BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 5.040e-48
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHG 294
            +GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +NEVY+N  HG
Sbjct:  106 IGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHG 203
[Close]
BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.620e-47
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            +GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +NEVY+N  HGIIA
Sbjct:  212 IGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIA 312
[Close]
BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.460e-46
Identity = 72/101 (71.29%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 303
            M YLG+  SESYGLTWKVRGFC D SNPEVFD  NVYG+I +SDIHH ++G+Y+YGH+ G W  NKMH N +YGFDPHDDSD+LTI +NEVY+N NHGIIA
Sbjct:   35 MAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIA 135
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6729.17758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR8_ECTSI7.350e-5682.18Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI3.130e-5484.16Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FIU4_ECTSI5.660e-5489.66Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FWW1_ECTSI2.350e-5177.23Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF4_9PHAE9.150e-4974.04MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LRM4_ECTSI1.000e-4875.24Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FXE5_ECTSI2.160e-4874.26Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KES9_9PHAE5.040e-4873.47MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7G339_ECTSI1.620e-4774.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE3.460e-4671.29Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6729contigF-serratus_M_contig6729:10936..11457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue7.6e-46
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.0961971-CDS-F-serratus_M_contig6729:10935..110641622932063.0961971-CDS-F-serratus_M_contig6729:10935..11064Fucus serratus maleCDSF-serratus_M_contig6729 10936..11064 -
1690964127.746592-CDS-F-serratus_M_contig6729:10935..110641690964127.746592-CDS-F-serratus_M_contig6729:10935..11064Fucus serratus maleCDSF-serratus_M_contig6729 10936..11064 -
1622932063.11116-CDS-F-serratus_M_contig6729:11283..114571622932063.11116-CDS-F-serratus_M_contig6729:11283..11457Fucus serratus maleCDSF-serratus_M_contig6729 11284..11457 -
1690964127.7593603-CDS-F-serratus_M_contig6729:11283..114571690964127.7593603-CDS-F-serratus_M_contig6729:11283..11457Fucus serratus maleCDSF-serratus_M_contig6729 11284..11457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6729.17758.1prot_F-serratus_M_contig6729.17758.1Fucus serratus malepolypeptideF-serratus_M_contig6729 10936..11457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6729.17758.1

>prot_F-serratus_M_contig6729.17758.1 ID=prot_F-serratus_M_contig6729.17758.1|Name=mRNA_F-serratus_M_contig6729.17758.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYY
GMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGII
A
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mRNA from alignment at F-serratus_M_contig6729:10936..11457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6729.17758.1 ID=mRNA_F-serratus_M_contig6729.17758.1|Name=mRNA_F-serratus_M_contig6729.17758.1|organism=Fucus serratus male|type=mRNA|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig6729:10936..11457- (Fucus serratus male)
ATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTTACGGTCTAACCTGGAA
GGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCGGAAGTGTTCGACACAA
CGAACGTGTACGGTGACATCAAGAACTCCGATATTCACCACATGTACTAC
GGAATGTATTCCTACGGCCACCAGGTGACCAAGAAGATATAGCGATATTC
CCGTCGATGTCATAAGAGCGATTTCGGTGGTATGTAATGCTTCACTTGGC
TTGTTTCTGTCCACCGCACGTAAAATAGAATACTATTAATAGTGTGTGCA
TGACCCATCCACGTGCGCACCAATCTTGACGATGTACGTACATGCCTCCG
ACGCGGGCATATCGTTTCCTCATTTGTTTCTCTGATATGGCAGGGCGGCG
TGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCGACCCC
CACGATGACTCAGACTACCTCACCATCGCCAACAACGAGGTCTACGACAA
CGTGAACCATGGTATCATCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6729:10936..11457-

>mRNA_F-serratus_M_contig6729.17758.1 ID=mRNA_F-serratus_M_contig6729.17758.1|Name=mRNA_F-serratus_M_contig6729.17758.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig6729:10936..11457- (Fucus serratus male)
ATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTTACGGTCTAACCTGGAA
GGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCGGAAGTGTTCGACACAA
CGAACGTGTACGGTGACATCAAGAACTCCGATATTCACCACATGTACTAC
GGAATGTATTCCTACGGCCACCAGATGGGCTACCTGGGGTGGTTCGACTC
GGAGTCTTACGGTCTAACCTGGAAGGTCCGCGGGTTCTGCGCCGACAAGA
GCAACCCGGAAGTGTTCGACACAACGAACGTGTACGGTGACATCAAGAAC
TCCGATATTCACCACATGTACTACGGAATGTATTCCTACGGCCACCAGGG
CGGCGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCG
ACCCCCACGATGACTCAGACTACCTCACCATCGCCAACAACGAGGTCTAC
GACAACGTGAACCATGGTATCATCGCGGGCGGCGTGTGGACGAACAACAA
GATGCACGACAACCACCAGTACGGTTTCGACCCCCACGATGACTCAGACT
ACCTCACCATCGCCAACAACGAGGTCTACGACAACGTGAACCATGGTATC
ATCGCG
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