mRNA_F-serratus_M_contig6716.17749.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6716.17749.1
Unique NamemRNA_F-serratus_M_contig6716.17749.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A6H5K031_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K031_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MADE ALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME
Sbjct:   33 MADE-ALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 71          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A835ZFH0_9STRA (Ribosomal protein S19-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-8
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MADE  L++EQ+ EMRKKRTF+KFTFRGV+L+KLLDLS E
Sbjct:    1 MADE--LSAEQMMEMRKKRTFKKFTFRGVELEKLLDLSNE 38          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: RS15_HELLU (40S ribosomal protein S15 (Fragment) n=1 Tax=Helix lucorum TaxID=31229 RepID=RS15_HELLU)

HSP 1 Score: 52.4 bits (124), Expect = 4.110e-8
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1
Query:   16 ALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            A T+E +AE +KKRTFRKFT+RGVDLD+LLD++M+
Sbjct:    2 AETAEDLAEKKKKRTFRKFTYRGVDLDQLLDMNMD 36          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A0P5MCJ9_9CRUS (40S ribosomal protein S15 n=29 Tax=Eukaryota TaxID=2759 RepID=A0A0P5MCJ9_9CRUS)

HSP 1 Score: 55.1 bits (131), Expect = 4.220e-8
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MADET + + ++A +RKKR F+KFT+RGVDLDKLLDL+ E
Sbjct:    1 MADETEIANIELAALRKKRAFKKFTYRGVDLDKLLDLNHE 40          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A0L0HJM2_SPIPD (40S ribosomal protein S15 n=3 Tax=Spizellomycetales TaxID=34478 RepID=A0A0L0HJM2_SPIPD)

HSP 1 Score: 54.3 bits (129), Expect = 8.090e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MADE     E  AE++KKRTFRKFTFRGVDLD+LLDLS E
Sbjct:    1 MADE--FDQESAAELKKKRTFRKFTFRGVDLDQLLDLSSE 38          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A1I7ZXZ4_9BILA (40S ribosomal protein S15 n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZXZ4_9BILA)

HSP 1 Score: 52.8 bits (125), Expect = 3.020e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MADE AL     AE++KKRTFRKFT+RGVDLD+LLD+S E
Sbjct:    1 MADEAAL-----AELKKKRTFRKFTYRGVDLDQLLDMSPE 35          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A1W5DC70_9LECA (40S ribosomal S15 n=216 Tax=leotiomyceta TaxID=716546 RepID=A0A1W5DC70_9LECA)

HSP 1 Score: 52.8 bits (125), Expect = 3.220e-7
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSMEVRR 129
            MAD T   +E+ AE++KKRTFRKF++RG+DLD+LLDLS E  R
Sbjct:    1 MAD-TDYNAEEAAELKKKRTFRKFSYRGIDLDQLLDLSSEQLR 42          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A818QCB3_9BILA (40S ribosomal protein S15 n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818QCB3_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 3.340e-7
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MAD+ A T    AE++KKRTFRKFT+RGVDLD+LLD+S E
Sbjct:    1 MADQEA-TGLSAAELKKKRTFRKFTYRGVDLDQLLDMSNE 39          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: W7T6H9_9STRA (40s ribosomal protein s15 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6H9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.120e-7
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 MADETALTSEQVA---EMRKKRTFRKFTFRGVDLDKLLDLSME 120
            MAD   L++E++A   E RKKR+F+KFTFRGVDLDKLLDL+ E
Sbjct:   87 MADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPE 129          
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Match: A0A1Y2E337_9PEZI (Ribosomal protein S19-domain-containing protein n=5 Tax=leotiomyceta TaxID=716546 RepID=A0A1Y2E337_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.230e-6
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSMEVRR 129
            MAD+    +E+ AE++KKR FRKF++RG+DLD LLDL  E  R
Sbjct:    1 MADDPDYNAEEAAELKKKRQFRKFSYRGIDLDALLDLDSEQLR 43          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6716.17749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K031_9PHAE4.200e-1497.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFH0_9STRA1.040e-875.00Ribosomal protein S19-domain-containing protein n=... [more]
RS15_HELLU4.110e-868.5740S ribosomal protein S15 (Fragment) n=1 Tax=Helix... [more]
A0A0P5MCJ9_9CRUS4.220e-865.0040S ribosomal protein S15 n=29 Tax=Eukaryota TaxID... [more]
A0A0L0HJM2_SPIPD8.090e-872.5040S ribosomal protein S15 n=3 Tax=Spizellomycetale... [more]
A0A1I7ZXZ4_9BILA3.020e-770.0040S ribosomal protein S15 n=1 Tax=Steinernema glas... [more]
A0A1W5DC70_9LECA3.220e-762.7940S ribosomal S15 n=216 Tax=leotiomyceta TaxID=716... [more]
A0A818QCB3_9BILA3.340e-767.5040S ribosomal protein S15 n=2 Tax=Rotaria sp. Silw... [more]
W7T6H9_9STRA8.120e-765.1240s ribosomal protein s15 n=2 Tax=Monodopsidaceae ... [more]
A0A1Y2E337_9PEZI1.230e-655.81Ribosomal protein S19-domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6716contigF-serratus_M_contig6716:6683..6826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932061.724775-CDS-F-serratus_M_contig6716:6682..68261622932061.724775-CDS-F-serratus_M_contig6716:6682..6826Fucus serratus maleCDSF-serratus_M_contig6716 6683..6826 -
1690964127.0711417-CDS-F-serratus_M_contig6716:6682..68261690964127.0711417-CDS-F-serratus_M_contig6716:6682..6826Fucus serratus maleCDSF-serratus_M_contig6716 6683..6826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6716.17749.1prot_F-serratus_M_contig6716.17749.1Fucus serratus malepolypeptideF-serratus_M_contig6716 6683..6826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6716.17749.1

>prot_F-serratus_M_contig6716.17749.1 ID=prot_F-serratus_M_contig6716.17749.1|Name=mRNA_F-serratus_M_contig6716.17749.1|organism=Fucus serratus male|type=polypeptide|length=48bp
MADETALTSEQVAEMRKKRTFRKFTFRGVDLDKLLDLSMEVRRYRKS*
back to top

mRNA from alignment at F-serratus_M_contig6716:6683..6826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6716.17749.1 ID=mRNA_F-serratus_M_contig6716.17749.1|Name=mRNA_F-serratus_M_contig6716.17749.1|organism=Fucus serratus male|type=mRNA|length=144bp|location=Sequence derived from alignment at F-serratus_M_contig6716:6683..6826- (Fucus serratus male)
ATGGCGGACGAGACAGCTTTGACTTCCGAGCAGGTGGCGGAGATGCGAAA GAAGCGCACCTTCCGCAAGTTTACATTCCGTGGGGTCGATCTCGACAAGC TGCTCGACCTCTCCATGGAGGTACGTCGCTACAGAAAATCCTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6716:6683..6826-

>mRNA_F-serratus_M_contig6716.17749.1 ID=mRNA_F-serratus_M_contig6716.17749.1|Name=mRNA_F-serratus_M_contig6716.17749.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig6716:6683..6826- (Fucus serratus male)
ATGGCGGACGAGACAGCTTTGACTTCCGAGCAGGTGGCGGAGATGCGAAA
GAAGCGCACCTTCCGCAAGTTTACATTCCGTGGGGTCGATCTCGACAAGC
TGCTCGACCTCTCCATGGAGGTACGTCGCTACAGAAAATCCTGAATGGCG
GACGAGACAGCTTTGACTTCCGAGCAGGTGGCGGAGATGCGAAAGAAGCG
CACCTTCCGCAAGTTTACATTCCGTGGGGTCGATCTCGACAAGCTGCTCG
ACCTCTCCATGGAGGTACGTCGCTACAGAAAATCCTGA
back to top