mRNA_F-serratus_M_contig6704.17737.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6704.17737.1
Unique NamemRNA_F-serratus_M_contig6704.17737.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: D7FMN3_ECTSI (Ribosome biogenesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.240e-36
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 2 
Query:   17 GGVAMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVMIGKSKSADKEGAARNSKASLAA 295
            GG   KRGK  TKGALE+VQ STASMGKFDERR AEPERRK KGVRRAFKPVTV SG+ET+ H+KILNSVMIGKSKSADK+G AR++K SLAA
Sbjct:  218 GGAPAKRGKANTKGALELVQHSTASMGKFDERRHAEPERRKGKGVRRAFKPVTVGSGEETQGHLKILNSVMIGKSKSADKDGTARSAKESLAA 310
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A7S2UUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.980e-8
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2 
Query:   29 MKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGD-ETKSHIKILNSVMIGKSKSADKEGAARNSKASLA 292
            +KRG+  T+  L +VQ STASMGKFDE R  EPE++  +G RR F+P+  A    E+++ +K + ++++ K KS  K   +  SK+ LA
Sbjct:  385 LKRGRDKTEKTLRLVQNSTASMGKFDEVRQGEPEKKARQGKRRKFQPLLSAQPKAESQAQLKTVQAILVNKGKS--KSQVSHQSKSDLA 471
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A485KFR7_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFR7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.630e-7
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:   26 AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM-----IGKSKSA 250
            A +RGK GTK AL+ VQ STASMGKFD++R  E ER KH G R  F  VT A   E +  + +L  V+      GK+KSA
Sbjct:  217 AKQRGKEGTKAALQKVQFSTASMGKFDKKREGEGER-KHVGKRNKFLSVTGAEKTEKERSMNVLQHVLGREENKGKAKSA 295
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A1V9ZCQ0_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCQ0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.970e-6
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:   32 KRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM 229
            +RGK GTK AL+ VQ STASMGKFD+ R  E ER K KG R  F  VT +   E +  + +LN V+
Sbjct:  219 QRGKEGTKAALQKVQFSTASMGKFDKMRQGEAER-KQKGKRNKFLSVTGSEQTEKERSMSVLNHVL 283
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A1V9ZJR0_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJR0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-6
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   26 AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM 229
            A +RGK GTK AL+ VQ STASMGKFD+ R  E ER K  G R  F  VT A   E +  + +LN V+
Sbjct:  220 AKQRGKEGTKAALQKVQFSTASMGKFDKMRTGEAER-KQTGKRNKFLSVTGAEKTEKERSMSVLNHVL 286
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A067CPT1_SAPPC (Ribosome biogenesis regulatory protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPT1_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 6.940e-6
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 2 
Query:   32 KRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM 229
            +RGK GTK AL+ VQ STASMGKFD+ R  E ER K  G R  F  VT A   E +  + +LN V+
Sbjct:  220 QRGKEGTKAALQKVQFSTASMGKFDKMRTGEAER-KQTGKRNKFLSVTGAEKTEKERSMHVLNHVL 284
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A6G0WAM1_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAM1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.980e-6
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   26 AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM 229
            A +RGK GTK AL+ VQ STASMGKFD++R  E ER K  G R  F  VT A   E +  + +L  V+
Sbjct:  218 AKQRGKEGTKAALQKVQFSTASMGKFDKKREGEGER-KQTGKRNKFLSVTGAEKTEKERSMNVLQHVL 284
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BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A024TRU1_9STRA (Ribosome biogenesis regulatory protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRU1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.010e-6
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2 
Query:   32 KRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVMIGKSKSADKEGAARNS 277
            +RGK GTK AL+ VQ STASMGKFD++R  E ER KH G R  F  VT +   E +  + +L   ++G+ ++  K  AA +S
Sbjct:  219 QRGKEGTKAALQKVQFSTASMGKFDKKREGEGER-KHVGKRNKFLSVTGSEKTEKERSMNVLQH-LLGREENKGKAKAASHS 298
[Close]
BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A484DXV0_BRELC (Ribosome biogenesis regulatory protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXV0_BRELC)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:   26 AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVMIGKSKSADKE 259
            A +RGK GT  ALE VQ STASMGKFD  R  E ER K KG R  F P T A   E +  +  L  V+ G+ ++A K+
Sbjct:  212 AKQRGKEGTSQALEKVQFSTASMGKFDAMRQGETER-KVKGKRNHFLPTTGAEATERERSLNALKRVL-GREENAGKK 287
[Close]
BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Match: A0A3F2RMI9_9STRA (Ribosome biogenesis regulatory protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMI9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 35/68 (51.47%), Postives = 40/68 (58.82%), Query Frame = 2 
Query:   26 AMKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTVASGDETKSHIKILNSVM 229
            A +RGK GT  ALE VQ STASMGKFD+ R  E ER K KG R  F P T A   E +  +  L  V+
Sbjct:  212 AKQRGKDGTTKALEKVQFSTASMGKFDKMREGESER-KQKGKRNHFLPTTGAETTEKERSLNALKHVL 278
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6704.17737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FMN3_ECTSI3.240e-3679.57Ribosome biogenesis regulatory protein n=2 Tax=Ect... [more]
A0A7S2UUR0_9STRA6.980e-841.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485KFR7_9STRA5.630e-750.00Ribosome biogenesis regulatory protein n=1 Tax=Aph... [more]
A0A1V9ZCQ0_9STRA1.970e-651.52Ribosome biogenesis regulatory protein n=1 Tax=Thr... [more]
A0A1V9ZJR0_9STRA1.980e-651.47Ribosome biogenesis regulatory protein n=1 Tax=Ach... [more]
A0A067CPT1_SAPPC6.940e-651.52Ribosome biogenesis regulatory protein n=2 Tax=Sap... [more]
A0A6G0WAM1_9STRA6.980e-650.00Ribosome biogenesis regulatory protein n=1 Tax=Aph... [more]
A0A024TRU1_9STRA7.010e-645.12Ribosome biogenesis regulatory protein n=5 Tax=Aph... [more]
A0A484DXV0_BRELC1.300e-548.72Ribosome biogenesis regulatory protein n=1 Tax=Bre... [more]
A0A3F2RMI9_9STRA1.300e-551.47Ribosome biogenesis regulatory protein n=3 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6704contigF-serratus_M_contig6704:856..2635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D7FMN3
Preferred nameRRS1
KEGG koko:K14852,ko:K15030
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000793,GO:0000794,GO:0000819,GO:0001650,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007275,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030097,GO:0030154,GO:0030490,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034399,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048285,GO:0048513,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1902570,GO:1903047,GO:1990904
EggNOG free text desc.ribosomal large subunit export from nucleus
EggNOG OGsCOG5225@1,KOG1765@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03012
Exons3
Model size296
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6704.17737.1prot_F-serratus_M_contig6704.17737.1Fucus serratus malepolypeptideF-serratus_M_contig6704 884..2635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932059.4903803-UTR-F-serratus_M_contig6704:855..8831622932059.4903803-UTR-F-serratus_M_contig6704:855..883Fucus serratus maleUTRF-serratus_M_contig6704 856..883 +
1690964125.8282368-UTR-F-serratus_M_contig6704:855..8831690964125.8282368-UTR-F-serratus_M_contig6704:855..883Fucus serratus maleUTRF-serratus_M_contig6704 856..883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932059.510668-CDS-F-serratus_M_contig6704:883..9541622932059.510668-CDS-F-serratus_M_contig6704:883..954Fucus serratus maleCDSF-serratus_M_contig6704 884..954 +
1690964125.84205-CDS-F-serratus_M_contig6704:883..9541690964125.84205-CDS-F-serratus_M_contig6704:883..954Fucus serratus maleCDSF-serratus_M_contig6704 884..954 +
1622932059.53115-CDS-F-serratus_M_contig6704:1740..18641622932059.53115-CDS-F-serratus_M_contig6704:1740..1864Fucus serratus maleCDSF-serratus_M_contig6704 1741..1864 +
1690964125.8539963-CDS-F-serratus_M_contig6704:1740..18641690964125.8539963-CDS-F-serratus_M_contig6704:1740..1864Fucus serratus maleCDSF-serratus_M_contig6704 1741..1864 +
1622932059.5564194-CDS-F-serratus_M_contig6704:2563..26351622932059.5564194-CDS-F-serratus_M_contig6704:2563..2635Fucus serratus maleCDSF-serratus_M_contig6704 2564..2635 +
1690964125.8684146-CDS-F-serratus_M_contig6704:2563..26351690964125.8684146-CDS-F-serratus_M_contig6704:2563..2635Fucus serratus maleCDSF-serratus_M_contig6704 2564..2635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6704.17737.1

>prot_F-serratus_M_contig6704.17737.1 ID=prot_F-serratus_M_contig6704.17737.1|Name=mRNA_F-serratus_M_contig6704.17737.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MKRGKVGTKGALEMVQQSTASMGKFDERRPAEPERRKHKGVRRAFKPVTV
ASGDETKSHIKILNSVMIGKSKSADKEGAARNSKASLAA
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mRNA from alignment at F-serratus_M_contig6704:856..2635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6704.17737.1 ID=mRNA_F-serratus_M_contig6704.17737.1|Name=mRNA_F-serratus_M_contig6704.17737.1|organism=Fucus serratus male|type=mRNA|length=1780bp|location=Sequence derived from alignment at F-serratus_M_contig6704:856..2635+ (Fucus serratus male)
GGGTGGCGGGTTGGAAGGTGGGGTCGCCATGAAGCGCGGCAAGGTCGGCA
CGAAGGGCGCCCTGGAGATGGTGCAGCAGTCGACGGCATCGATGGGAAAG
TGAGAAGAAGGGAACTGCTAACCGTTACTCTGTCTTTGTGTTATAATAGT
ATTATTAATAGCATCAAAAGATCATGAGTGCTGAAAGTTTACTATTTGGG
TTATTCCGCCGTCCTCCGCCGTCCACCCTGGATTCCATTCCTAATCCTAA
TTGTTACTCCGGTGGATTCATACTGCGACTGTTTCTTTTTCCAACCGGGG
ACGCGAGCAATAGCTGTTATAATAGAAGTATCATTTGGATCATTTGGATG
TTTAGCTAAGTATATAATTACCAGTACGGCTCTGGATTACTCCATAATAG
GTTAAATAAGTTGTGTTTTAAAAGTGTGTTAAGGGAGTGTGTGAGGGGGG
GGATGGGGgaGGGGTGGGGCACGCTAGTGCTATCGGGGAGCTGGGATAGA
GATAGAGCAGGAATCGTGCACGCCAATCAAGCACGTCAATCACCCTTGAG
ATTTTGTTAAGAGGTGAGATTAGTAAAAAGGCAGGATGAGCTACTGGACG
AAGGCCTGAACCGATTGTCTCATATCGTTTCGCATCTGGGCGCAGAGCAA
GTCTCCCCTTCATCACGTAACACCTTAGCGTTATCTCATGTTGTTTCACG
TTAAACGAGTCAACAAAACTCCCCGCAGCCTCTACAGGACAATGTTTCTT
TTAAAGCTGGAACTCCCTACACACTAGCACGTAGTACGCCCTGCTCCACG
GTGCTCTTGAGATACACCTATCTTACCCCCCCCCCCATTCTGTTGGTTTC
AACTTGGCACCCTCCCTCCCTCCCTTTGCCCGAAGGTTCGATGAACGACG
CCCAGCGGAGCCAGAGAGGAGAAAGCACAAGGGCGTACGACGGGCGTTCA
AGCCGGTCACTGTGGCTTCGGGGGACGAGACAAAGAGCCATATCAAAATT
CTCAACTCGGTGCGATGATGCGGAGGCGTTCTGTTTCGTAGGGCCAAACG
TAAAATCCTGGTTGGACTATTAATACCATTCCTACTATTAAAATGGGGAA
GGGATAGGAGTGGGTGCTGGATGCTTTGAAACTTTGAACTCCTCCCCCCC
AAAGGGAATAGTATAGTTCGTAAAAAcATTTGAATCCTCTGTCTGACCGC
TTCCGCCCttCTCTTCTCTTCTCCCCATGAACTAGTGGACACATATTTGC
CACCGGCACCTGTGCGATTCAGCTCCGGCAAGATGTTTTCAGAGATGTCT
CGCCTACCGATCCGTCGAGAACTCTTACTAATAATACACTTGTTCCCTGC
CAACAACAGCCTATGATCCGACCTATTTTTTTAACATTTTTTTCCCCTTG
CGGGATGGGGATGCTTAGAAGGTCTATTAGATGCGTTCAGATTTTTCTTA
AAGAACCCGTACTTGTGTGGGGGCATAAGGTGGGAAGGAAAAAAAAGAAA
AATTTCTCCCCTGCGGAGAAAGGGGACATTATCAGATACATCCTCTGGAT
CTTTACAAGATACCCGCGTCTTCATCAACCtCCCTCTCCCTCTGGCGTGC
GAAAATTCTGcctcccctCCCCCCCCCCCCCCCCCCTGCCTGCCTACCTG
TGGCCTGCACACACAAACTCATATGAACACAACACGCAATGCGTATGTAC
CGAAACAGGTCATGATCGGTAAGTCGAAGAGTGCCGACAAGGAGGGGGCG
GCCCGCAACTCAAAGGCGTCGCTGGCCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6704:856..2635+

>mRNA_F-serratus_M_contig6704.17737.1 ID=mRNA_F-serratus_M_contig6704.17737.1|Name=mRNA_F-serratus_M_contig6704.17737.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig6704:856..2635+ (Fucus serratus male)
ATGAAGCGCGGCAAGGTCGGCACGAAGGGCGCCCTGGAGATGGTGCAGCA
GTCGACGGCATCGATGGGAAAATGAAGCGCGGCAAGGTCGGCACGAAGGG
CGCCCTGGAGATGGTGCAGCAGTCGACGGCATCGATGGGAAAGTTCGATG
AACGACGCCCAGCGGAGCCAGAGAGGAGAAAGCACAAGGGCGTACGACGG
GCGTTCAAGCCGGTCACTGTGGCTTCGGGGGACGAGACAAAGAGCCATAT
CAAAATTCTCAACTCGGTTCGATGAACGACGCCCAGCGGAGCCAGAGAGG
AGAAAGCACAAGGGCGTACGACGGGCGTTCAAGCCGGTCACTGTGGCTTC
GGGGGACGAGACAAAGAGCCATATCAAAATTCTCAACTCGGTCATGATCG
GTAAGTCGAAGAGTGCCGACAAGGAGGGGGCGGCCCGCAACTCAAAGGCG
TCGCTGGCCGCCGTCATGATCGGTAAGTCGAAGAGTGCCGACAAGGAGGG
GGCGGCCCGCAACTCAAAGGCGTCGCTGGCCGCC
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