mRNA_F-serratus_M_contig67.17710.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig67.17710.1
Unique NamemRNA_F-serratus_M_contig67.17710.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A6H5KZK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.040e-36
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 297
            GAYGAHGL+ K+DK K+ W TA QYQ+ HALALATLP ++KT ART  G+ FT GITLFSGSIY   L EDK+A+++AP GG+ +ILGWATMA+L+R
Sbjct:   17 GAYGAHGLAGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLFFTTGITLFSGSIYYACLKEDKKASKVAPAGGICMILGWATMAILKR 113          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A835YJ16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ16_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.740e-32
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 297
            GA GAH L  KT+K K+ WNTA +YQL+H+LALA LPA++++ ART  GVLFT+GI LFSGSIYTY+LT++ + +  AP GG+A I GW ++ALL+R
Sbjct:   18 GAIGAHRLKNKTEKEKNDWNTATRYQLIHSLALAVLPAYQRSNARTAAGVLFTSGIILFSGSIYTYILTDNIKMSGAAPLGGMAFIAGWLSLALLKR 114          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: D8LH09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH09_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.710e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIY 198
            GAYGAHGLS K+DK K+ W TA QYQ+ HALALATLP ++KT ART  G+LFT GITLFSGSIY
Sbjct:   18 GAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIY 81          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A7S4IW56_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IW56_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.470e-18
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAF---EKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 297
            GAYGAHGL  K       + T A+Y L+H+  L   P+     +TRA T  G   T GI LF GS Y   +TED+   + AP GGV+LILGW ++ALLR+
Sbjct:   19 GAYGAHGLRGKDQSYVRSYETGARYHLVHSALLVATPSICGGGRTRAATAAGAFLTTGIGLFCGSCYAVGVTEDRAYGKAAPAGGVSLILGWVSLALLRK 118          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A485KYZ3_9STRA (Aste57867_13786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYZ3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.570e-17
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    7 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 288
            GA+GAHGL    K  K    W+TAA Y L+H++AL  +P    TR   V G L T GI  FSGS+YT VLTE K+   + P GG+A I GW  + L
Sbjct:   32 GAFGAHGLQTRVKDPKLLKNWDTAAHYHLMHSIALLVVPF---TRRPNVVGGLLTTGIVFFSGSLYTLVLTEQKKLGMITPLGGLAFIAGWLALLL 124          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A1V9ZTF8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.110e-16
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    7 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 288
            GA+GAHGL    K  K    W TAA YQL+H++AL  +P     R   + G L  +GI LFSGS+YT VLTE KR   + P GG+  + GW ++ L
Sbjct:   30 GAFGAHGLQTRVKDPKLLKTWETAAHYQLIHSVALLAVPF---ARRPNLAGGLIASGIVLFSGSLYTIVLTEHKRLGMITPMGGLMFVAGWLSLLL 122          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A1Z9BRI6_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Z9BRI6_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.060e-15
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAK-SQWNTAAQYQLLHALALATLP--AFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 297
            GA+GAHGL  +    + S W TA+QY LLH++ L  L   A +   +  + G LFTAG+ LFSGSIY  VLTE +    + P GG+ LI GW ++  L R
Sbjct:   18 GAFGAHGLRDRVSPEQISAWTTASQYHLLHSVVLLALALYALDAQASIRLQGSLFTAGVVLFSGSIYLLVLTEQRWLGPVTPIGGLLLIAGWGSLLFLAR 117          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A7S3QFL9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QFL9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.590e-15
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 GAYGAHGL--SKKTDKAKSQWNTAAQYQLLHALALATLPAFEKT------RARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 297
            GAY +HGL  +KK++     + T ++YQL+H+  L   PA  ++       A  V G  F +GI +FSGS Y   L ED+   +LAP GGVALI GW ++ALLRR
Sbjct:   19 GAYASHGLKKNKKSETYAKVFETGSRYQLIHSAMLVATPAICRSGGGKYAMASRVAGACFASGIAMFSGSCYAVGLMEDRSYGKLAPVGGVALIGGWISLALLRR 123          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A6A5C3X0_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C3X0_NAEFO)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-15
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    7 GAYGAHGLSKKTDKAKSQ-WNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 288
            GA+G HGL +     K   W TA QY L+H+LAL  +    KTR   V G LFTAGI +FSGS+Y  VLT+ K+   + P GG + I GW  MA+
Sbjct:   29 GAFGGHGLKRIASPEKIDVWKTAVQYHLIHSLALLAVSQL-KTRHHLVGG-LFTAGIVIFSGSLYALVLTDHKKLGAITPIGGFSFIFGWLAMAI 121          
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Match: A0A1W0A5T2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5T2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.830e-15
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    7 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 288
            GA+GAHGL    K  K    W+TAAQY LLH+  L  +P     R   + G L T GI  FSGS+YT VLTE KR   + P GG+  + GW  + L
Sbjct:   24 GAFGAHGLQNRVKDPKMLKNWDTAAQYHLLHSAVLLAVPF---ARRPNLVGGLITTGIVFFSGSLYTLVLTEKKRLGMITPMGGLMFVAGWLCLLL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig67.17710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZK4_9PHAE1.040e-3665.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ16_9STRA5.740e-3259.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LH09_ECTSI3.710e-2173.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4IW56_9STRA5.470e-1846.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A485KYZ3_9STRA4.570e-1747.92Aste57867_13786 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZTF8_9STRA8.110e-1645.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1Z9BRI6_9BACT1.060e-1545.00Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A7S3QFL9_9STRA1.590e-1543.81Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6A5C3X0_NAEFO1.640e-1547.37Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A1W0A5T2_9STRA1.830e-1545.83Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig67contigF-serratus_M_contig67:107116..108755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog7668.SPU_006472-tr
Preferred nameTMEM256
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transmembrane protein 256
EggNOG OGs3A6D5@33154,3BSU0@33208,3D9JR@33213,COG2363@1,KOG3472@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size1060
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig67.17710.1prot_F-serratus_M_contig67.17710.1Fucus serratus malepolypeptideF-serratus_M_contig67 107876..108755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932053.1264112-UTR-F-serratus_M_contig67:107115..1078751622932053.1264112-UTR-F-serratus_M_contig67:107115..107875Fucus serratus maleUTRF-serratus_M_contig67 107116..107875 -
1690964122.1674058-UTR-F-serratus_M_contig67:107115..1078751690964122.1674058-UTR-F-serratus_M_contig67:107115..107875Fucus serratus maleUTRF-serratus_M_contig67 107116..107875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932053.1433892-CDS-F-serratus_M_contig67:107875..1079701622932053.1433892-CDS-F-serratus_M_contig67:107875..107970Fucus serratus maleCDSF-serratus_M_contig67 107876..107970 -
1690964122.1800427-CDS-F-serratus_M_contig67:107875..1079701690964122.1800427-CDS-F-serratus_M_contig67:107875..107970Fucus serratus maleCDSF-serratus_M_contig67 107876..107970 -
1622932053.1578872-CDS-F-serratus_M_contig67:108550..1087551622932053.1578872-CDS-F-serratus_M_contig67:108550..108755Fucus serratus maleCDSF-serratus_M_contig67 108551..108755 -
1690964122.1894844-CDS-F-serratus_M_contig67:108550..1087551690964122.1894844-CDS-F-serratus_M_contig67:108550..108755Fucus serratus maleCDSF-serratus_M_contig67 108551..108755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig67.17710.1

>prot_F-serratus_M_contig67.17710.1 ID=prot_F-serratus_M_contig67.17710.1|Name=mRNA_F-serratus_M_contig67.17710.1|organism=Fucus serratus male|type=polypeptide|length=100bp
DKGAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVT
GVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR*
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mRNA from alignment at F-serratus_M_contig67:107116..108755-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig67.17710.1 ID=mRNA_F-serratus_M_contig67.17710.1|Name=mRNA_F-serratus_M_contig67.17710.1|organism=Fucus serratus male|type=mRNA|length=1640bp|location=Sequence derived from alignment at F-serratus_M_contig67:107116..108755- (Fucus serratus male)
GATAAAGGCGCCTACGGAGCCCACGGCTTGTCGAAAAAGACTGACAAGGC TAAGAGCCAGTGGAATACCGCGGCTCAGTATCAGCTCCTGCACGCCCTGG CTCTCGCCACCCTGCCGGCCTTCGAGAAGACTCGTGCAAGAACCGTCACG GGCGTGCTCTTCACCGCCGGCATCACACTTTTTTCCGGCTCCATCTACAC CTACGGTGAGAAATATATTCACCAGTTCACCCAGTTGCACACAGATAAAA ACTGATGTTGTATTATTTGGCAGTATACTTGTAAACACTACTGTACTACT GTAGCACACTTGTCAGCCGCCACAACGACCTCGATGAGTCTGTTACACAG TATTAATAGTTTACTTCCGCTATCCCGCTGTCTCCCAGCATCTTTCTGCT TGCAATGTCAAAGCATACGGCAAGTCTAGCTGAGGACCCATTCCGTACCC TACCAAGACGCGCGGGCCATGCCCGATCCTGGTAGCGGACAGCGAGGCGA CTCTGGCTACTGTATCTTGTTATTATTGTTCAATCCTTATCGAACGAGTC GCGGGAAAGATCGCACGGATCATGACATGCGACACAATGCCCCCCCCCCT GCGCGGCAGAAGATCCGCCCAATATTTTTCTCTCACATATACAGTAACGT ATTCATAGCTCTATCCCGATCCTATTAATACTAATTGAGTTTCTACTCCG TTCTTTGCCCCTCGTGTTTTTTCATCGTGCGCTTTTTTTGTCTTCATTTT TGCGACTGATGTCTTGTACTATTCCTATTGAACAGTTCTCACCGAAGATA AGCGGGCGAATCGCTTGGCGCCAACGGGCGGAGTTGCGCTTATTCTGGGC TGGGCGACCATGGCGCTCCTGAGGCGCTGAAACAAGATTCATCTATCATC TATCATCAAAAGCACAAAATGCGCTGGAAACCGCTTTCATTTATAGACTG ATTTGTCATTTAAGGAGAAAAATGAAATTATCATTTTCACGTGTGTAAGA AATTTCCAATTTTTCCCAAGCGCGTTGTATTGAGATGGAGTGCTTCGCGA TTCAATTTCAATCTCGTGATCGTTGTCTTGTCTTTTTTATCAATTCGAGT TATGCTGGTTATGGTTCTCTTTAACTTGCTATAATGCTGCTCAAGGAAAA ATCAGAACGCGCCTAGACCTTCTGAGCTGTAGAACACGAGTAGCACTCAC ATACTGCAGCGGCGCCGGCCGTACAGCAGTATTAACCTTTTAATAGGGCA CATGTAGAGCGCTCTCGGCATCGCACGGAGAAAGTTTTTTGAGGCCTGCA TTCCGCCAAGTCCAAGTCCGAGTCTCTCGCACCTATGCAGCTATTGACAC ATAGTACTTGTTTGCCCTCAAATCCGTCTCTCTCCGATCAGCTCTTGTGT AACACTGTTGTATTTTTTGTTACCTGGTACGATCTTCCGGGGGAAAAGAA ACGGTACACACGGAAGCGTCGACGAAACAGCTTCGCTTAGCGATGTGCCG TCGAGTGTAAGGGTTACCTTCCTCACTCCCTACGCGCCAATGCCCTCCCG GGGGTGGGCGATGTGTCATCTCTAAGAGTGCTTATTGGCCTAAGAGTGCT TCGACCGCACAGTCTTCTCCTACTCTCGAGTGAAAGCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig67:107116..108755-

>mRNA_F-serratus_M_contig67.17710.1 ID=mRNA_F-serratus_M_contig67.17710.1|Name=mRNA_F-serratus_M_contig67.17710.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig67:107116..108755- (Fucus serratus male)
GATAAAGGCGCCTACGGAGCCCACGGCTTGTCGAAAAAGACTGACAAGGC
TAAGAGCCAGTGGAATACCGCGGCTCAGTATCAGCTCCTGCACGCCCTGG
CTCTCGCCACCCTGCCGGCCTTCGAGAAGACTCGTGCAAGAACCGTCACG
GGCGTGCTCTTCACCGCCGGCATCACACTTTTTTCCGGCTCCATCTACAC
CTACGGATAAAGGCGCCTACGGAGCCCACGGCTTGTCGAAAAAGACTGAC
AAGGCTAAGAGCCAGTGGAATACCGCGGCTCAGTATCAGCTCCTGCACGC
CCTGGCTCTCGCCACCCTGCCGGCCTTCGAGAAGACTCGTGCAAGAACCG
TCACGGGCGTGCTCTTCACCGCCGGCATCACACTTTTTTCCGGCTCCATC
TACACCTACGTTCTCACCGAAGATAAGCGGGCGAATCGCTTGGCGCCAAC
GGGCGGAGTTGCGCTTATTCTGGGCTGGGCGACCATGGCGCTCCTGAGGC
GCTGATTCTCACCGAAGATAAGCGGGCGAATCGCTTGGCGCCAACGGGCG
GAGTTGCGCTTATTCTGGGCTGGGCGACCATGGCGCTCCTGAGGCGCTGA
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