mRNA_F-serratus_M_contig6694.17701.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6694.17701.1
Unique NamemRNA_F-serratus_M_contig6694.17701.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.240e-23
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 SRADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEV---VKQLEALKTK 369
            +R  + ERE   Y+ E    +   F++L YW  R  D +  + GKV +PA  P++  +ARLY G++ TSCQAERNFSAL  ++  +R   LP KVE+M+ +RLNRHL+    E+   V + +A KTK
Sbjct:  504 TRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTK 630          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.300e-23
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 SRADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEV---VKQLEALKTK 369
            +R  + ERE   Y+ E    +   F++L YW  R  D +  + GKV +PA  P++  +ARLY G++ TSCQAERNFSAL  ++  +R   LP KVE+M+ +RLNRHL+    E+   V + +A KTK
Sbjct:  699 TRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTK 825          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.530e-23
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 SRADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGI-DPSGKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEVVKQLEALKTKFDVHAAVSVAAQ 405
            +R  + ERE   Y+ E       DF++L +W  R  D +   +G V +PA  P++  +ARL+ G++ +SCQAERNFSAL  ++  +R   L  KVE+M+L+RLNRHL+    E+   +   + K    A  SVA Q
Sbjct:  122 NRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQ 257          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.560e-22
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   13 VAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLN 309
            + ERE   Y+ E    +  DF+LL +W  R  D +  + GKV +PA  P++  +ARL+ G++ TSCQAERNFSAL  ++ D R   L H+VE+M+L+RLN
Sbjct:  121 LIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.780e-22
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   13 VAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLI 321
            + ERE   Y+ E    +  DF+LL +W  R  D +  + GKV +PA  P++  +ARL+ G++ TSCQAERNFSAL  ++ D+    L H+VE+M+L+RLN+HL+
Sbjct:  504 LIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.330e-22
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 SRADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGI-DPSGKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEVVKQLEALKTKFDVHAAVSVAAQ 405
            +R  + ERE   Y+ E       DF++L +W  R  D +   +G V +PA  P++  +ARL+ G++ +SCQAERNFSAL  ++  +R   L  KVE+M+L+RLNRHL+    E+   +   + K    A  SVA Q
Sbjct:  687 NRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQ 822          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.590e-21
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   13 VAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIP---GFAEVVKQLEALKTKFDVHAAVSVAAQ 405
            + ERE   Y+ E    +   F+L+ +W  R  D +  + G+V +PA  P++  +ARL+ G++ TSCQAERNFSAL  ++ ++R   LPH+VE+M+L+RLNR ++     F   V +   + TK   +AA S AAQ
Sbjct:  400 LIEREMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRAFDAAVSRAREMATK---NAAKSAAAQ 531          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.960e-21
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   13 VAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPS-GKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLI 321
            + ERE   Y+ E    +   F+L+ +W  R  + + P+ GKV APA  P++  +ARL+ G++ TSCQAERNFSAL  ++  +R   L  KVE+M+L+RLNRHL+
Sbjct:  386 LIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.370e-20
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    4 RADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPSGKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEVVKQLEALK 363
            R  + ERE   Y+ E       DF LLE+W  RS          V P   PH+ L+ARL+ G+++TSCQAERNFSAL  ++  +R+  LP KVE+++ LRLNR  IP    +   +EA K
Sbjct:  363 RGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANK 481          
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.690e-20
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    4 RADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPSGKVVAPARWPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLLRLNRHLIPGFAEVVKQLEALK 363
            R  + ERE   Y+ E       DF LLE+W  RS          V P   PH+ L+ARL+ G+++TSCQAERNFSAL  ++  +R+  LP KVE+++ LRLNR  IP    +   +EA K
Sbjct:  691 RGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANK 809          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6694.17701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.240e-2342.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.300e-2342.52Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE4.530e-2338.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE2.560e-2245.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE3.780e-2244.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE7.330e-2238.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE1.590e-2139.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.960e-2144.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE6.370e-2042.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE7.690e-2042.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6694contigF-serratus_M_contig6694:8232..8636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932050.514406-CDS-F-serratus_M_contig6694:8231..86361622932050.514406-CDS-F-serratus_M_contig6694:8231..8636Fucus serratus maleCDSF-serratus_M_contig6694 8232..8636 +
1690964120.8189425-CDS-F-serratus_M_contig6694:8231..86361690964120.8189425-CDS-F-serratus_M_contig6694:8231..8636Fucus serratus maleCDSF-serratus_M_contig6694 8232..8636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6694.17701.1prot_F-serratus_M_contig6694.17701.1Fucus serratus malepolypeptideF-serratus_M_contig6694 8232..8636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6694.17701.1

>prot_F-serratus_M_contig6694.17701.1 ID=prot_F-serratus_M_contig6694.17701.1|Name=mRNA_F-serratus_M_contig6694.17701.1|organism=Fucus serratus male|type=polypeptide|length=135bp
SRADVAEREFNAYMKEAAPSNNSDFDLLEYWATRSVDGIDPSGKVVAPAR
WPHIGLLARLYAGVDTTSCQAERNFSALKQVVSDMRAGTLPHKVEKMLLL
RLNRHLIPGFAEVVKQLEALKTKFDVHAAVSVAAQ
back to top

mRNA from alignment at F-serratus_M_contig6694:8232..8636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6694.17701.1 ID=mRNA_F-serratus_M_contig6694.17701.1|Name=mRNA_F-serratus_M_contig6694.17701.1|organism=Fucus serratus male|type=mRNA|length=405bp|location=Sequence derived from alignment at F-serratus_M_contig6694:8232..8636+ (Fucus serratus male)
AGTCGAGCTGACGTCGCAGAGCGCGAGTTTAACGCGTACATGAAAGAGGC GGCCCCCTCCAACAACTCCGACTTCGATTTGCTTGAGTACTGGGCTACGC GGAGTGTAGATGGGATAGACCCGTCAGGGAAGGTTGTAGCACCTGCCCGC TGGCCGCACATCGGGTTGCTGGCTAGGTTGTACGCAGGCGTCGACACCAC TAGCTGTCAAGCTGAGAGGAATTTTTCCGCTCTCAAACAAGTCGTTAGTG ACATGCGAGCCGGCACCCTTCCCCACAAGGTCGAGAAGATGTTGCTGCTG AGGCTCAATAGGCACCTCATCCCTGGTTTTGCTGAAGTCGTGAAGCAGCT GGAAGCCTTGAAGACGAAGTTTGATGTACACGCGGCTGTATCAGTTGCCG CCCAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6694:8232..8636+

>mRNA_F-serratus_M_contig6694.17701.1 ID=mRNA_F-serratus_M_contig6694.17701.1|Name=mRNA_F-serratus_M_contig6694.17701.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig6694:8232..8636+ (Fucus serratus male)
AGTCGAGCTGACGTCGCAGAGCGCGAGTTTAACGCGTACATGAAAGAGGC
GGCCCCCTCCAACAACTCCGACTTCGATTTGCTTGAGTACTGGGCTACGC
GGAGTGTAGATGGGATAGACCCGTCAGGGAAGGTTGTAGCACCTGCCCGC
TGGCCGCACATCGGGTTGCTGGCTAGGTTGTACGCAGGCGTCGACACCAC
TAGCTGTCAAGCTGAGAGGAATTTTTCCGCTCTCAAACAAGTCGTTAGTG
ACATGCGAGCCGGCACCCTTCCCCACAAGGTCGAGAAGATGTTGCTGCTG
AGGCTCAATAGGCACCTCATCCCTGGTTTTGCTGAAGTCGTGAAGCAGCT
GGAAGCCTTGAAGACGAAGTTTGATGTACACGCGGCTGTATCAGTTGCCG
CCCAGAGTCGAGCTGACGTCGCAGAGCGCGAGTTTAACGCGTACATGAAA
GAGGCGGCCCCCTCCAACAACTCCGACTTCGATTTGCTTGAGTACTGGGC
TACGCGGAGTGTAGATGGGATAGACCCGTCAGGGAAGGTTGTAGCACCTG
CCCGCTGGCCGCACATCGGGTTGCTGGCTAGGTTGTACGCAGGCGTCGAC
ACCACTAGCTGTCAAGCTGAGAGGAATTTTTCCGCTCTCAAACAAGTCGT
TAGTGACATGCGAGCCGGCACCCTTCCCCACAAGGTCGAGAAGATGTTGC
TGCTGAGGCTCAATAGGCACCTCATCCCTGGTTTTGCTGAAGTCGTGAAG
CAGCTGGAAGCCTTGAAGACGAAGTTTGATGTACACGCGGCTGTATCAGT
TGCCGCCCAG
back to top