mRNA_F-serratus_M_contig669.17689.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: D7G2K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI) HSP 1 Score: 107 bits (266), Expect = 3.680e-26 Identity = 69/135 (51.11%), Postives = 74/135 (54.81%), Query Frame = 3
Query: 234 MVELQGELISKEPLSGQSLGTMTLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGL-----------------GTAVVYEVVGRVTKKTIFKTRPKPLIRKI 587
MVELQGELISK+PLSGQ LG+MT E GK LVI NHKLEGK A EPKPLLVLRKV V DVN V Y VVGRV +KTIFKTRPKPLI+K+
Sbjct: 1 MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVV-------------DVNDENCGXXXXXXXXXXXXXXXXXXXXXXXXXXPPAQRVEYRVVGRVARKTIFKTRPKPLIKKL 122
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: W4GXI3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXI3_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.180e-12 Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 3
Query: 228 WSMVELQGELISKEPLSGQSLGTMTLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLI 578
WS++ELQGELI+ S LG + + G PTL+IG H LEGK KP+ ++RK +D G G+ D NG +S T+ Y VVG KK +F TRPKP++
Sbjct: 16 WSILELQGELIADTKAS-LKLGHLQYQKGVPTLLIGTHLLEGKVLKLSKPMAIMRKKPHADHADIGSGD---DTNGVASS-----------NTSTGYIVVGIARKKLVFNTRPKPVV 117
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A1V9YDE7_9STRA (Chromosome transmission fidelity protein 8-like isoform X2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDE7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.980e-12 Identity = 57/147 (38.78%), Postives = 73/147 (49.66%), Query Frame = 3
Query: 138 MIIPVRISVAPRTTKQSLSAGEKEGLVVPNWSMVELQGELISKEPLSGQSLGTMTLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLI 578
M IP+R+S S + G+ E WS+VELQGELIS E + LG + + G PTL+IGNH LEGK KP+ ++RK +G +D G GTA Y VVG KK IF TRPKP++
Sbjct: 1 MRIPLRVS--------SSADGKAE------WSIVELQGELIS-ETKASLDLGQLEYKKGVPTLLIGNHLLEGKITKLVKPMAIMRK----------EGSKDD-----------------GPGTA--YTVVGIARKKLIFNTRPKPVL 103
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A4Z2EZ71_9TELE (Chromosome transmission fidelity protein 8 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2EZ71_9TELE) HSP 1 Score: 68.2 bits (165), Expect = 2.900e-11 Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 3
Query: 183 QSLSAGEKEGLVVPNWSMVELQGELISKEP--LSGQSLGTM-TLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLIRKI 587
Q + G +G P W +VELQGE++S+ L+G +G + + G P L++G+H L GK+ KPL VL K + P D + N G T+ Y V + +K IFKTRPKP+I +
Sbjct: 3 QIVVRGSVDGSSPPEWLLVELQGEMVSRHNSGLAGNVMGDLLSTREGTPVLIVGHHILYGKQLKLEKPLAVLTKHSSPLDGGEDVTRVDMETNQPGP-------------TSTSYTVAALIKRKLIFKTRPKPIITNV 127
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A485LBF8_9STRA (Aste57867_18404 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBF8_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.360e-11 Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3
Query: 228 WSMVELQGELISKEPLSGQSLGTMTLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLI 578
WS++ELQGEL+ S +LG + + G PTL+IGNH LEGK KP+ ++RK + + RDGDV + + Y VVG KK +F TRPKP++
Sbjct: 16 WSILELQGELVCDSKAS-LTLGKLQYQKGVPTLLIGNHLLEGKTVKLGKPMAIMRKRS------KTSAPRDGDVEESKSD--------------EAYTVVGIARKKLVFGTRPKPVL 111
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A024U7I7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7I7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 7.930e-11 Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3
Query: 228 WSMVELQGELISKEPLSGQSLGTMTLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLI 578
WS++ELQGELI+ S LG + + G PTL+IG H LEGK PKP+ ++RK +D D D T+ Y VVG KK +F +RPKP++
Sbjct: 35 WSILELQGELIADSKAS-LKLGQLQYQKGVPTLLIGTHLLEGKVVKLPKPMAIMRKKAKEVSAD------DTDT------------------TSTAYTVVGIARKKLVFNSRPKPVV 126
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: UPI0009E2B761 (chromosome transmission fidelity protein 8 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2B761) HSP 1 Score: 66.6 bits (161), Expect = 7.980e-11 Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 3
Query: 219 VPNWSMVELQGELISKEPLS--GQSLGTMTLEG-GKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLI 578
V NW+++ELQG L +KE +S G+++G + +G G P L+IG+H L GK KP VL K T +D + ++ G+ + Y+V V KK IFKTRPKP++
Sbjct: 12 VDNWTIIELQGTLETKEDVSLEGKAIGDLHFDGKGTPMLIIGHHLLTGKVVDLDKPYAVLHKKT----NDEDNHDKKGETH---------------------YDVCALVKKKIIFKTRPKPIV 109
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: UPI001886F2FE (chromosome transmission fidelity protein 8 homolog n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI001886F2FE) HSP 1 Score: 68.2 bits (165), Expect = 9.370e-11 Identity = 50/152 (32.89%), Postives = 73/152 (48.03%), Query Frame = 3
Query: 153 RISVAPRTTKQSLSAGEKEGLVVPNWSMVELQGELISKEP--LSGQSLGTMTLEG-GKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLG----TAVVYEVVGRVTKKTIFKTRPKPLIRKI 587
+++ A T Q G +G P W MVELQGE++S+ L+G +G + G P L++G+H L GK+ KPL +L K + G + NG S R V + T+ Y V + +K IFKTRPKP+I +
Sbjct: 40 QLTSADGTMVQIFIRGSADGTSPPEWLMVELQGEMVSRHDSGLAGNVMGDLLYTNEGTPVLIVGHHILYGKQLKLEKPLAILTKHSSHLQDSLGSHD-------NGNSSRDVTHVAMETNQQGPTSTSYTVSALIKRKLIFKTRPKPIITNV 184
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A3Q3QU36_MONAL (Chromosome transmission fidelity factor 8 n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3QU36_MONAL) HSP 1 Score: 66.6 bits (161), Expect = 1.760e-10 Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query: 183 QSLSAGEKEGLVVPNWSMVELQGELISKEP--LSGQSLGTMTL-EGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLIRKI 587
Q + G +G P W +VELQGE++S+ L+G +G + + G P L++G+H L GK+ KP VL K + S G D + NG+ + ++ D G T+ Y V + +K IFKTRPKP+I +
Sbjct: 14 QIVIRGSGDGGPCPEWLLVELQGEMVSRHNSGLTGNVMGDLLYTKEGVPVLIVGHHILYGKQVKLEKPFAVLTKHSGQ--SQDTVGGHDSNSNGDDATQVPIETDQRGS-TSSSYSVSALIKRKLIFKTRPKPIITNV 148
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Match: A0A8C2X2P7_CYCLU (CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2X2P7_CYCLU) HSP 1 Score: 68.2 bits (165), Expect = 2.550e-10 Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 3
Query: 171 RTTKQSLSAGEKEGLVVPNWSMVELQGELISKEP--LSGQSLGTM-TLEGGKPTLVIGNHKLEGKEAVEPKPLLVLRKVTVPRPSDRGDGERDGDVNGNGTSGRVVDGDGVGLGTAVVYEVVGRVTKKTIFKTRPKPLIRKI 587
RT Q + G +G P W +VELQGE++S+ L+G +G + + G P L++G+H L GK+ KPL VL K + G +DG + G T+ Y V + +K IFKTRPKP+I +
Sbjct: 116 RTMVQIVIRGSVDGSSPPEWLLVELQGEMVSRHNSGLAGNVMGDLLSTREGTPVLIVGHHILYGKQLKLEKPLAVLTKHSSHLQDSLGSHGKDGSSEDVTQVAMETNQQGP---TSTSYTVSALIKRKLIFKTRPKPIITNV 254 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig669.17689.1 >prot_F-serratus_M_contig669.17689.1 ID=prot_F-serratus_M_contig669.17689.1|Name=mRNA_F-serratus_M_contig669.17689.1|organism=Fucus serratus male|type=polypeptide|length=152bp MIIPVRISVAPRTTKQSLSAGEKEGLVVPNWSMVELQGELISKEPLSGQSback to top mRNA from alignment at F-serratus_M_contig669:166265..170537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig669.17689.1 ID=mRNA_F-serratus_M_contig669.17689.1|Name=mRNA_F-serratus_M_contig669.17689.1|organism=Fucus serratus male|type=mRNA|length=4273bp|location=Sequence derived from alignment at F-serratus_M_contig669:166265..170537+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig669:166265..170537+ >mRNA_F-serratus_M_contig669.17689.1 ID=mRNA_F-serratus_M_contig669.17689.1|Name=mRNA_F-serratus_M_contig669.17689.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig669:166265..170537+ (Fucus serratus male)back to top |