mRNA_F-serratus_M_contig669.17685.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig669.17685.1
Unique NamemRNA_F-serratus_M_contig669.17685.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig669contigF-serratus_M_contig669:110528..113247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size593
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig669.17685.1prot_F-serratus_M_contig669.17685.1Fucus serratus malepolypeptideF-serratus_M_contig669 111760..113247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932047.8386147-UTR-F-serratus_M_contig669:110527..1106061622932047.8386147-UTR-F-serratus_M_contig669:110527..110606Fucus serratus maleUTRF-serratus_M_contig669 110528..110606 +
1690964119.3020432-UTR-F-serratus_M_contig669:110527..1106061690964119.3020432-UTR-F-serratus_M_contig669:110527..110606Fucus serratus maleUTRF-serratus_M_contig669 110528..110606 +
1622932047.8617203-UTR-F-serratus_M_contig669:111736..1117591622932047.8617203-UTR-F-serratus_M_contig669:111736..111759Fucus serratus maleUTRF-serratus_M_contig669 111737..111759 +
1690964119.3140726-UTR-F-serratus_M_contig669:111736..1117591690964119.3140726-UTR-F-serratus_M_contig669:111736..111759Fucus serratus maleUTRF-serratus_M_contig669 111737..111759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932047.8794343-CDS-F-serratus_M_contig669:111759..1118191622932047.8794343-CDS-F-serratus_M_contig669:111759..111819Fucus serratus maleCDSF-serratus_M_contig669 111760..111819 +
1690964119.326249-CDS-F-serratus_M_contig669:111759..1118191690964119.326249-CDS-F-serratus_M_contig669:111759..111819Fucus serratus maleCDSF-serratus_M_contig669 111760..111819 +
1622932047.8975203-CDS-F-serratus_M_contig669:112548..1128901622932047.8975203-CDS-F-serratus_M_contig669:112548..112890Fucus serratus maleCDSF-serratus_M_contig669 112549..112890 +
1690964119.3390846-CDS-F-serratus_M_contig669:112548..1128901690964119.3390846-CDS-F-serratus_M_contig669:112548..112890Fucus serratus maleCDSF-serratus_M_contig669 112549..112890 +
1622932047.9152336-CDS-F-serratus_M_contig669:113160..1132471622932047.9152336-CDS-F-serratus_M_contig669:113160..113247Fucus serratus maleCDSF-serratus_M_contig669 113161..113247 +
1690964119.354997-CDS-F-serratus_M_contig669:113160..1132471690964119.354997-CDS-F-serratus_M_contig669:113160..113247Fucus serratus maleCDSF-serratus_M_contig669 113161..113247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig669.17685.1

>prot_F-serratus_M_contig669.17685.1 ID=prot_F-serratus_M_contig669.17685.1|Name=mRNA_F-serratus_M_contig669.17685.1|organism=Fucus serratus male|type=polypeptide|length=163bp
MHGTAYLCIFSLGAITALNQANAVPIKGLTHVQLGMLGSGSGDKSVGKSH
HHKRALQSSTVSSFDITVTFVNSINLAEGTAVDITFDGSSGPVGTFTVYA
PASGETAFFEFCLDAAGESDITAGDDAEDTVLIVDIEPNVCPCGVDVCFD
PHLQGLRGQHIEW
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mRNA from alignment at F-serratus_M_contig669:110528..113247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig669.17685.1 ID=mRNA_F-serratus_M_contig669.17685.1|Name=mRNA_F-serratus_M_contig669.17685.1|organism=Fucus serratus male|type=mRNA|length=2720bp|location=Sequence derived from alignment at F-serratus_M_contig669:110528..113247+ (Fucus serratus male)
CTACTTTCTTCCTCCCTCCCTCCCTCATCCTATTATCCACGAGAGAGTGA
GAAGAAGAGCGATCTTCAGCTGAGGTGAGGTAAGCTATTAGACATAATAA
TGAGGTGTAATATCTAGTATTTTTTTTGCGTTTGTGTCGCTCTGGAACAA
GTAAACGCTGCTGCTTCGTCGTCTCCCAAGCACTTTTATTACTACTATTT
TACAGTAGTACTACCTGCCCTGCGCTCGCCGCCAAGCTGATATTATGATG
ATGAGCAGCTTGTACAAATGATCCGACAGATAACTTTAGGACTTTTCGTA
CACGGCCCAAGTAGTACTGGTTAGCTTTCTACAAACAATTTCTTCGGTTG
GGCTGCGGCTTTGATTACTCTCTCTCCTCGTAGTAGTAGCTGCCGCATAC
ATATTCCAAGACGTGATCCTCTACCTCGAGCTCCCACAACAACAGCCTAA
CTAAGGCGCCATACGAAGCAGAAGAGGTCGAAGGTTGGGGCTTCGTTCTC
ACTTTCACCGACTACAAATACTAGTAGAAATGCACCCTTCTACTTACTGG
CATTCTTCGCTGTTAAGGTCGAAGATCTTGAGTCGTGTGAAGTAGTTGTA
CCGTAGTGCCTGTAGGCAACATAACAGGCATTGATTGGATTTGAGGATAA
TTTTGGCTTGACATAGCTCTACCCAACCAACTATTAATAGTCTCTCCAGG
GTGCTCGCTATCGCATCATGTTATCCCTATTATTGCTCGAGATATTATTA
ATGGTGTCGGCTGGAATCAAATGAAAACAATAATATGTCTCTTCGAGGCC
TGTAATTATTCAGCAGAGACTGACTACTTGACTACATGATGTCTTGATAG
TTTTTTATGTTACTCAAAGGACTTTTTACTATTTATTTGGTTCACGGAGT
TCTCCTTCAGGCTAACTCCCTGGTACACCATCAATGGTAATGCTATATTA
TTTTAATACCGTGCAGTAGGTGGTGGTATGTATGTAATAAACACAATTTT
TTGTTTTTTGCGCGGCCTCCTCTTAGGCTAGCTCCATCGATGTGTGAATT
TTTGAAGTACCTTAGGATGCTTGTAACAAGCGGATTGGGAAACCTCAGAA
GTCAATCGACTTGGATGTGATACTACAGTGTAGTAGTAAAGGTAATACAA
CTCGATATTTTCCGACGCATAAATGCGACAAATTCGACAACCTCCTTCTC
GCGACACAGGACCTTGCTGTAACGGCTGCGACATGCACGGGACTGCTTAT
CTCTGCATCTTCTCCCTCGGGGCCATAACCGCCCTCAATCAGGTCAGCAA
CTTTTTTATACTGGCGGCATAACCGTCTCCGTCGCGCAGTCTACATAGAA
TTACAGTATACTAAAATATTAGTCGATTCGGCAGCTAGCTCGTGAACTTC
ATTCTTCGCCGAGCAGAACGTTGTTCTGAAAGTTTTCTAAGAATTCCCCG
CCATCGGCGTGTCTTTAACGGGTTGCATCTCAACGACAAAAACTGTTACT
ACTTCACTGTAAAATTTGAGTACACATGGCATGGAGATACTTTGGTAGAA
GAGAGATAATCGTGAAAAATCAACGAAAAAGCAAAGGAGGGGAAAAAACG
GAGTGTCGAGACGAGAAAGAGTCTGTTTACCAGAATCATTTGCCGTTGGA
CACGAACAAACATACTGCATGCCGGTAACATACCTGTAAGGTAGGAACTG
GTAATATACGGATCTCATATACCACGGGTATATAGGCAATGTGAAACCCT
AAATAACCGAGGCGAGAGAGGCGTGAGAGAGGCGTGTCGCATACCAAGTA
CATGTATGTGTCGTCGGTGCTTGCGGATGTCCTGTTTAAAACCGGTTGAC
TGTAAAATTTAGTCTCACGTGGTACTCTGGGGCGAAGTATCAACAGTTCG
CGGCACTATTCCTCAACAGAGAACACACTCTCTCTCTCCTCGCCTGTATC
TTGAGCTGTACATGAGATTCGAGGATTGTAAATCGTGCGTGCCTTCTCTA
AATACACCATGCCCTGTGCAGGCGAATGCCGTGCCTATCAAGGGACTAAC
ACATGTTCAGCTCGGCATGCTTGGATCGGGATCGGGTGACAAGTCCGTGG
GCAAGAGTCACCACCACAAGCGCGCTCTTCAGAGCAGCACCGTTAGCTCA
TTCGACATCACTGTGACCTTCGTCAACTCGATTAATCTGGCAGAGGGCAC
CGCTGTCGACATCACCTTCGACGGGTCTTCGGGGCCAGTGGGCACCTTTA
CAGTGTATGCTCCGGCATCTGGTGAAACGGCATTTTTCGAATTCTGCTTG
GACGCCGCCGGAGAATCTGACATTACAGCGGGGGATGATGCGGAGGACAC
CGTTCTGATTGTGGTGAGCACTACCGGTTAGCTCGTAAAAGTTGTTGCGA
ATGAAAACTACTTAACAGAGCTTTTTGTGATAGACCAAGATTGAAAGGAA
GTAAAGTTTGATGCCACTACAGAATACTGATTTACATGATGGCTGTGGTA
AACAAGCCTACAATATCTGATGCAAAGGTACTACGGCATATTTGAGCATG
ACGATGTCGACCTTTCGGCGGGAAATCAGCGTCCTTTACACATTATTTTT
CGTGGTGTCTTTCAAACCTTTTTGCCGTGCCAGGACATCGAGCCGAACGT
ATGCCCCTGCGGGGTTGATGTGTGCTTCGACCCGCATCTGCAAGGCCTTC
GTGGACAGCACATTGAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig669:110528..113247+

>mRNA_F-serratus_M_contig669.17685.1 ID=mRNA_F-serratus_M_contig669.17685.1|Name=mRNA_F-serratus_M_contig669.17685.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig669:110528..113247+ (Fucus serratus male)
ATGCACGGGACTGCTTATCTCTGCATCTTCTCCCTCGGGGCCATAACCGC
CCTCAATCAGATGCACGGGACTGCTTATCTCTGCATCTTCTCCCTCGGGG
CCATAACCGCCCTCAATCAGGCGAATGCCGTGCCTATCAAGGGACTAACA
CATGTTCAGCTCGGCATGCTTGGATCGGGATCGGGTGACAAGTCCGTGGG
CAAGAGTCACCACCACAAGCGCGCTCTTCAGAGCAGCACCGTTAGCTCAT
TCGACATCACTGTGACCTTCGTCAACTCGATTAATCTGGCAGAGGGCACC
GCTGTCGACATCACCTTCGACGGGTCTTCGGGGCCAGTGGGCACCTTTAC
AGTGTATGCTCCGGCATCTGGTGAAACGGCATTTTTCGAATTCTGCTTGG
ACGCCGCCGGAGAATCTGACATTACAGCGGGGGATGATGCGGAGGACACC
GTTCTGATTGTGGCGAATGCCGTGCCTATCAAGGGACTAACACATGTTCA
GCTCGGCATGCTTGGATCGGGATCGGGTGACAAGTCCGTGGGCAAGAGTC
ACCACCACAAGCGCGCTCTTCAGAGCAGCACCGTTAGCTCATTCGACATC
ACTGTGACCTTCGTCAACTCGATTAATCTGGCAGAGGGCACCGCTGTCGA
CATCACCTTCGACGGGTCTTCGGGGCCAGTGGGCACCTTTACAGTGTATG
CTCCGGCATCTGGTGAAACGGCATTTTTCGAATTCTGCTTGGACGCCGCC
GGAGAATCTGACATTACAGCGGGGGATGATGCGGAGGACACCGTTCTGAT
TGTGGACATCGAGCCGAACGTATGCCCCTGCGGGGTTGATGTGTGCTTCG
ACCCGCATCTGCAAGGCCTTCGTGGACAGCACATTGAGTGGGACATCGAG
CCGAACGTATGCCCCTGCGGGGTTGATGTGTGCTTCGACCCGCATCTGCA
AGGCCTTCGTGGACAGCACATTGAGTGG
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