mRNA_F-serratus_M_contig6685.17682.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6685.17682.1
Unique NamemRNA_F-serratus_M_contig6685.17682.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6685.17682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6685contigF-serratus_M_contig6685:17929..18724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932047.5561192-CDS-F-serratus_M_contig6685:17928..180091622932047.5561192-CDS-F-serratus_M_contig6685:17928..18009Fucus serratus maleCDSF-serratus_M_contig6685 17929..18009 +
1690964119.1900382-CDS-F-serratus_M_contig6685:17928..180091690964119.1900382-CDS-F-serratus_M_contig6685:17928..18009Fucus serratus maleCDSF-serratus_M_contig6685 17929..18009 +
1622932047.5775938-CDS-F-serratus_M_contig6685:18490..187241622932047.5775938-CDS-F-serratus_M_contig6685:18490..18724Fucus serratus maleCDSF-serratus_M_contig6685 18491..18724 +
1690964119.204822-CDS-F-serratus_M_contig6685:18490..187241690964119.204822-CDS-F-serratus_M_contig6685:18490..18724Fucus serratus maleCDSF-serratus_M_contig6685 18491..18724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6685.17682.1prot_F-serratus_M_contig6685.17682.1Fucus serratus malepolypeptideF-serratus_M_contig6685 17929..18724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6685.17682.1

>prot_F-serratus_M_contig6685.17682.1 ID=prot_F-serratus_M_contig6685.17682.1|Name=mRNA_F-serratus_M_contig6685.17682.1|organism=Fucus serratus male|type=polypeptide|length=105bp
DGGSGAGNTTGLGGGRSAAGSPGSAPQAIQSPDHVRQKFVKSLQRKVDAA
ITDKSRFPFTDFMVYPPAPAFGGLLVRDHYYRRPCLVWVVELACNRYFPG
LHPPC
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mRNA from alignment at F-serratus_M_contig6685:17929..18724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6685.17682.1 ID=mRNA_F-serratus_M_contig6685.17682.1|Name=mRNA_F-serratus_M_contig6685.17682.1|organism=Fucus serratus male|type=mRNA|length=796bp|location=Sequence derived from alignment at F-serratus_M_contig6685:17929..18724+ (Fucus serratus male)
GACGGCGGGAGTGGGGCTGGAAATACAACGGGGCTAGGAGGCGGCCGGAG
TGCAGCTGGATCACCAGGCAGTGCACCGCAGGTCTTGTTTTTGTTTCATT
GTTGTCATGGGACTTTGACTATTGCTTTGCCGTGAGATATCGGGATACGT
ACACACAGCGTGTCGGCAAATGGCTTTTACCCTGTGGTGTAATGGTAACC
TTATCACATACCACTTGTACAATGTACTACTATATGATTGTATCTTTATA
CGAACAAGTTGTACTGGTAGTTGAATTTTACCCTGTGGTGTATTATTAAT
AGTAACCTTATCGCATACTGGTACTCCGTACTTGTTCAACCTAAATGATT
GTATGTATAGTCACACATATAGCAAGGGTATGGATCAACCTGGTAAGGCT
GCCAATTCTGCTCGTGGTCAGCTGAACAGCAAAAATAATATTTCTCTGTC
CGCGTTCGTGCCTGAAAATTTGGTATCGCGAGACGGTTGTATCTTTACAC
GAACAAGTTGTAATAGTATGTACTGTACTGGTATTGTTCTTGTGTTTATC
CGTATGGTCCAGGCTATACAGTCGCCTGATCATGTGCGGCAGAAATTCGT
CAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAGAGCCGGT
TTCCGTTCACCGACTTCATGGTCTACCCTCCTGCGCCGGCATTCGGTGGC
TTGCTGGTCCGTGATCACTACTACCGGCGCCCGTGCCTCGTGTGGGTGGT
GGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6685:17929..18724+

>mRNA_F-serratus_M_contig6685.17682.1 ID=mRNA_F-serratus_M_contig6685.17682.1|Name=mRNA_F-serratus_M_contig6685.17682.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig6685:17929..18724+ (Fucus serratus male)
GACGGCGGGAGTGGGGCTGGAAATACAACGGGGCTAGGAGGCGGCCGGAG
TGCAGCTGGATCACCAGGCAGTGCACCGCAGGACGGCGGGAGTGGGGCTG
GAAATACAACGGGGCTAGGAGGCGGCCGGAGTGCAGCTGGATCACCAGGC
AGTGCACCGCAGGCTATACAGTCGCCTGATCATGTGCGGCAGAAATTCGT
CAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAGAGCCGGT
TTCCGTTCACCGACTTCATGGTCTACCCTCCTGCGCCGGCATTCGGTGGC
TTGCTGGTCCGTGATCACTACTACCGGCGCCCGTGCCTCGTGTGGGTGGT
GGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGCGCTA
TACAGTCGCCTGATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGC
AAGGTCGATGCCGCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTT
CATGGTCTACCCTCCTGCGCCGGCATTCGGTGGCTTGCTGGTCCGTGATC
ACTACTACCGGCGCCCGTGCCTCGTGTGGGTGGTGGAGTTGGCGTGCAAC
AGATACTTTCCAGGTCTTCATCCACCTTGC
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