mRNA_F-serratus_M_contig667.17675.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig667.17675.1
Unique NamemRNA_F-serratus_M_contig667.17675.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig667.17675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig667contigF-serratus_M_contig667:342563..342958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.552232-UTR-F-serratus_M_contig667:342562..3426281622932044.552232-UTR-F-serratus_M_contig667:342562..342628Fucus serratus maleUTRF-serratus_M_contig667 342563..342628 +
1690964117.840646-UTR-F-serratus_M_contig667:342562..3426281690964117.840646-UTR-F-serratus_M_contig667:342562..342628Fucus serratus maleUTRF-serratus_M_contig667 342563..342628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.5676875-CDS-F-serratus_M_contig667:342628..3429581622932044.5676875-CDS-F-serratus_M_contig667:342628..342958Fucus serratus maleCDSF-serratus_M_contig667 342629..342958 +
1690964117.8506334-CDS-F-serratus_M_contig667:342628..3429581690964117.8506334-CDS-F-serratus_M_contig667:342628..342958Fucus serratus maleCDSF-serratus_M_contig667 342629..342958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig667.17675.1prot_F-serratus_M_contig667.17675.1Fucus serratus malepolypeptideF-serratus_M_contig667 342629..342958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig667.17675.1

>prot_F-serratus_M_contig667.17675.1 ID=prot_F-serratus_M_contig667.17675.1|Name=mRNA_F-serratus_M_contig667.17675.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MRECEGHVNLVRDLTCEKEAELRHETARRMKAEGEMLRAERDKERAIQKQ
REAEEKSRKIKQELRSLHEEKQKLAKKHQQLCRATGFPNNPEVEGEEGSI
RCLEDELQLE
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mRNA from alignment at F-serratus_M_contig667:342563..342958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig667.17675.1 ID=mRNA_F-serratus_M_contig667.17675.1|Name=mRNA_F-serratus_M_contig667.17675.1|organism=Fucus serratus male|type=mRNA|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig667:342563..342958+ (Fucus serratus male)
GCACGTCAACAGCGCGATGAAGCCATAGAGCAGCAGAAAAAGGCTGAAAA
ATAAGCTTCGGAGAAAATGCGCGAGTGCGAGGGACACGTCAACTTAGTGC
GTGATCTCACGTGCGAGAAAGAGGCGGAGCTGCGCCACGAGACAGCGCGA
AGGATGAAGGCCGAAGGAGAGATGCTAAGGGCTGAGAGGGACAAAGAGAG
GGCGATCCAGAAGCAGCGGGAGGCGGAAGAGAAATCCCGCAAGATAAAGC
AGGAGCTGCGCTCTCTGCATGAAGAAAAACAAAAGCTGGCGAAAAAACAC
CAACAACTTTGCCGCGCGACCGGCTTCCCAAACAACCCGGAGGTGGAGGG
AGAGGAGGGGAGCATACGCTGCCTTGAAGATGAACTTCAGCTCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig667:342563..342958+

>mRNA_F-serratus_M_contig667.17675.1 ID=mRNA_F-serratus_M_contig667.17675.1|Name=mRNA_F-serratus_M_contig667.17675.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig667:342563..342958+ (Fucus serratus male)
ATGCGCGAGTGCGAGGGACACGTCAACTTAGTGCGTGATCTCACGTGCGA
GAAAGAGGCGGAGCTGCGCCACGAGACAGCGCGAAGGATGAAGGCCGAAG
GAGAGATGCTAAGGGCTGAGAGGGACAAAGAGAGGGCGATCCAGAAGCAG
CGGGAGGCGGAAGAGAAATCCCGCAAGATAAAGCAGGAGCTGCGCTCTCT
GCATGAAGAAAAACAAAAGCTGGCGAAAAAACACCAACAACTTTGCCGCG
CGACCGGCTTCCCAAACAACCCGGAGGTGGAGGGAGAGGAGGGGAGCATA
CGCTGCCTTGAAGATGAACTTCAGCTCGAAATGCGCGAGTGCGAGGGACA
CGTCAACTTAGTGCGTGATCTCACGTGCGAGAAAGAGGCGGAGCTGCGCC
ACGAGACAGCGCGAAGGATGAAGGCCGAAGGAGAGATGCTAAGGGCTGAG
AGGGACAAAGAGAGGGCGATCCAGAAGCAGCGGGAGGCGGAAGAGAAATC
CCGCAAGATAAAGCAGGAGCTGCGCTCTCTGCATGAAGAAAAACAAAAGC
TGGCGAAAAAACACCAACAACTTTGCCGCGCGACCGGCTTCCCAAACAAC
CCGGAGGTGGAGGGAGAGGAGGGGAGCATACGCTGCCTTGAAGATGAACT
TCAGCTCGAA
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