mRNA_F-serratus_M_contig667.17672.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig667.17672.1
Unique NamemRNA_F-serratus_M_contig667.17672.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: A0A6H5K2G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G8_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 9.310e-68
Identity = 99/140 (70.71%), Postives = 121/140 (86.43%), Query Frame = 1
Query:    1 HAVFQGTDSAVVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFLM 420
            HAVF+G  SAVVLFDGECNFCNSGVWMMISNS+AR++RFCAQN+E+G SLL SFGQ+ ERLSSIA+LDK GHL+TRS A++ I+ARM+ P+P  A LLKAVPEP+RD++YG+VSR RH  GTES  CRIPE+ E+ RF++
Sbjct:   96 HAVFEGAKSAVVLFDGECNFCNSGVWMMISNSEARNLRFCAQNSEMGVSLLHSFGQDQERLSSIAILDKDGHLYTRSCALVHIMARMDFPFPVGAALLKAVPEPLRDAVYGFVSRRRHMFGTESLSCRIPEESEVERFVL 235          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: D7FYZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.160e-49
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   79 MMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFLM 420
            MMISNS+AR++RFCAQN+E+G SLL SFGQ+ ERLSSIA+LDK GHL+TRS A++ I+ARM+ P+P  A LLKAVPEPVRD++YG+VSR RH  GTES  CRIPE+ E+ RF++
Sbjct:    1 MMISNSEARNLRFCAQNSEMGVSLLHSFGQDQERLSSIAILDKDGHLYTRSCALVHIMARMDFPFPVGAALLKAVPEPVRDAVYGFVSRRRHVFGTESLSCRIPEESEVERFVL 114          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: A0A836CDU0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.170e-28
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   82 MISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            ++++SDA  +RF AQ ++ G  +L  FG     L SIAVL + G L T+SAAV+EI  RM  P+PALA +  A+PEP RD++Y WVS  R   G  +  CRIPED+E++RFL
Sbjct:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFG-HADSCRIPEDEEMARFL 111          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: UPI0006984491 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Aureispira sp. CCB-QB1 TaxID=1313421 RepID=UPI0006984491)

HSP 1 Score: 90.9 bits (224), Expect = 9.610e-21
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   19 TDSAVVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            TDSA+VLFDG CNFCN  V  +I        +F A  +E G +LL  +  + + L +I ++++ G  +T S A + I+ ++ +PWP   + +  VP  +R+ +Y W+S+NR+    + + C +P  +  +RFL
Sbjct:    3 TDSAIVLFDGVCNFCNQSVQFIIKRDPKGYFKFGALQSESGQALLHQYNLSPDVLDTIVLIEQ-GKAYTYSTAPLRIVRKLRLPWPIFYIFI-LVPTFIRNPIYKWISKNRYKWFGKQEHCMMPTPEIRNRFL 133          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: A0A3N4AUK4_9PSED (Thiol-disulfide oxidoreductase DCC family protein n=3 Tax=Pseudomonadales TaxID=72274 RepID=A0A3N4AUK4_9PSED)

HSP 1 Score: 88.2 bits (217), Expect = 1.520e-19
Identity = 43/129 (33.33%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   31 VVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            ++LFDG C  CN+    +IS+   R  R C+  +  G  LL  +G  ++R  ++ VL + G    +S A +++++ +  PW AL V+L+ +PEP+RD +Y  ++ NR+ L  +   CR+P  D   RF+
Sbjct:   18 IILFDGVCKLCNAWANFIISHDYQRVYRLCSVQSASGERLLRQYGYPTDRFETMLVLQQ-GRCSAKSQAFLQVMSGLGWPWRAL-VVLRLIPEPLRDWLYDRIALNRYRLFGKYDYCRLPTPDHAERFV 144          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: A0A3N9UKL6_9BACI (DUF393 domain-containing protein n=1 Tax=Lysinibacillus composti TaxID=720633 RepID=A0A3N9UKL6_9BACI)

HSP 1 Score: 87.4 bits (215), Expect = 1.850e-19
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   31 VVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            ++LFDGEC+FC+  V  +I     +  +F +   E G  LL    + ++ L SI VL + G ++T+S+AV+ I  ++N  W  L V +  VP P+R+ +Y  V++NRH L   +Q CRIP  D++ RFL
Sbjct:    4 IILFDGECHFCDRSVQFIIKRDLRKQFKFASIQGEKGQQLLQQH-RVAKTLDSI-VLIEGGKIYTKSSAVLRICKQLNRHWKLLYVFI-IVPSPIRNLVYDLVAKNRHKLNKSNQ-CRIPTKDDLERFL 128          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: UPI000FDB2A9F (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Paenibacillus koleovorans TaxID=121608 RepID=UPI000FDB2A9F)

HSP 1 Score: 85.9 bits (211), Expect = 8.890e-19
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   28 AVVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            ++VLFDGEC+FC+S V  ++    A   R+ A  +E    LL     +  RL SI +L++ G  +T S A + I AR    WP  A  L  VP P+RD +Y +V+R+R+        C +P  D   RFL
Sbjct:    7 SIVLFDGECSFCDSSVQFILKRDPAGRFRYAALQSEAARRLLTGHDIDPSRLDSIVLLEE-GRCYTESTAALRI-ARHLQGWPRWAAPLHIVPRPIRDGVYRFVARHRYRWFGRRDQCLLPPPDIRRRFL 134          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: UPI0003F5C8C6 (DCC1-like thiol-disulfide oxidoreductase family protein n=1 Tax=Alteribacter aurantiacus TaxID=254410 RepID=UPI0003F5C8C6)

HSP 1 Score: 85.1 bits (209), Expect = 1.690e-18
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   31 VVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            V+LFDGECNFC+  V  MI     R   F +  +E G +LL  +       S I + +     H RS A + I   +  PW  LA  L  +P P+RDS+Y  ++RNR     + + CR+P  +E  RFL
Sbjct:    4 VILFDGECNFCDGSVQFMIPRDPRRVFSFASLQSEEGQALLKKYDVPRGVDSMILIDEDQEEFHMRSGAALRIARELTRPWN-LAYPLIIIPYPIRDSVYNLIARNRLNWFGKREACRMPTPEERERFL 131          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: UPI00187367C0 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Cytobacillus luteolus TaxID=682179 RepID=UPI00187367C0)

HSP 1 Score: 84.7 bits (208), Expect = 2.150e-18
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   31 VVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            ++LFDGECNFC+  V  +I        +F +  +E G  LL+ +   S+ + SI +L + GH + +S+A + I  ++   W  L + +  +P P+RD  Y  ++RNR+    +++ CRIP  +E  RFL
Sbjct:    4 IILFDGECNFCDQSVQFIIKRDPKGDFKFASLQSETGKELLSKYNA-SKSIDSI-ILIEDGHCYYKSSAALRICKKLKGAWKLLYLFI-ILPRPLRDFFYDIIARNRYKWFGKNESCRIPSPEERKRFL 129          
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Match: UPI001F599349 (DCC1-like thiol-disulfide oxidoreductase family protein n=1 Tax=Bacillus cereus group sp. BfR-BA-01315 TaxID=2920292 RepID=UPI001F599349)

HSP 1 Score: 84.7 bits (208), Expect = 2.210e-18
Identity = 42/130 (32.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   28 AVVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSLLASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKAVPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFL 417
            +++LFDGECNFCN  V  +I        R+ +   +IG  +L  +  +S  + SI ++D  G+ + +S A+I I  ++N PW  L ++ K +P+ +R+ +Y   ++NR+ L  +   C++P  D   RFL
Sbjct:    3 SIILFDGECNFCNQSVQFIIKRDSLGYFRYASLQGDIGKRMLKQYNIDSS-IDSIVLIDN-GNSYIKSDAIINICKKLNGPWKGL-IIFKLIPKSIRNFLYEKFAKNRYKLFGKQTHCKLPSPDIRKRFL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig667.17672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2G8_9PHAE9.310e-6870.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYZ6_ECTSI1.160e-4967.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDU0_9STRA2.170e-2849.11Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI00069844919.610e-2133.83thiol-disulfide oxidoreductase DCC family protein ... [more]
A0A3N4AUK4_9PSED1.520e-1933.33Thiol-disulfide oxidoreductase DCC family protein ... [more]
A0A3N9UKL6_9BACI1.850e-1937.98DUF393 domain-containing protein n=1 Tax=Lysinibac... [more]
UPI000FDB2A9F8.890e-1936.92thiol-disulfide oxidoreductase DCC family protein ... [more]
UPI0003F5C8C61.690e-1836.43DCC1-like thiol-disulfide oxidoreductase family pr... [more]
UPI00187367C02.150e-1833.33thiol-disulfide oxidoreductase DCC family protein ... [more]
UPI001F5993492.210e-1832.31DCC1-like thiol-disulfide oxidoreductase family pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig667contigF-serratus_M_contig667:154201..155138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.4
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog290315.Clim_0724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-disulphide oxidoreductase DCC
EggNOG OGs1FDWJ@1090,COG3011@1,COG3011@2
Ec32 ortholog descriptionProtein of unknown function DUF393
Ec32 orthologEc-06_002200.1
COG Functional cat.S
Best tax levelChlorobi
Best eggNOG OGNA|NA|NA
Exons2
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932045.667694-CDS-F-serratus_M_contig667:154200..1543291622932045.667694-CDS-F-serratus_M_contig667:154200..154329Fucus serratus maleCDSF-serratus_M_contig667 154201..154329 +
1690964118.3506055-CDS-F-serratus_M_contig667:154200..1543291690964118.3506055-CDS-F-serratus_M_contig667:154200..154329Fucus serratus maleCDSF-serratus_M_contig667 154201..154329 +
1622932045.6934578-CDS-F-serratus_M_contig667:154844..1551381622932045.6934578-CDS-F-serratus_M_contig667:154844..155138Fucus serratus maleCDSF-serratus_M_contig667 154845..155138 +
1690964118.3636053-CDS-F-serratus_M_contig667:154844..1551381690964118.3636053-CDS-F-serratus_M_contig667:154844..155138Fucus serratus maleCDSF-serratus_M_contig667 154845..155138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig667.17672.1prot_F-serratus_M_contig667.17672.1Fucus serratus malepolypeptideF-serratus_M_contig667 154201..155138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig667.17672.1

>prot_F-serratus_M_contig667.17672.1 ID=prot_F-serratus_M_contig667.17672.1|Name=mRNA_F-serratus_M_contig667.17672.1|organism=Fucus serratus male|type=polypeptide|length=141bp
HAVFQGTDSAVVLFDGECNFCNSGVWMMISNSDARSMRFCAQNTEIGNSL
LASFGQNSERLSSIAVLDKPGHLHTRSAAVIEILARMNMPWPALAVLLKA
VPEPVRDSMYGWVSRNRHALGTESQMCRIPEDDEISRFLM*
back to top

mRNA from alignment at F-serratus_M_contig667:154201..155138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig667.17672.1 ID=mRNA_F-serratus_M_contig667.17672.1|Name=mRNA_F-serratus_M_contig667.17672.1|organism=Fucus serratus male|type=mRNA|length=938bp|location=Sequence derived from alignment at F-serratus_M_contig667:154201..155138+ (Fucus serratus male)
CACGCGGTGTTTCAGGGCACGGACAGCGCAGTGGTCCTCTTCGACGGAGA GTGCAACTTCTGCAACTCGGGCGTGTGGATGATGATCTCCAACTCCGACG CCAGGAGCATGCGCTTTTGCGCTCAGAACGTGAGGAACGAGCGGAGGGGA GGGGAGGAAGATTTCGATATTTTATTCGCGTGTTGTATTGTCTCGGTTAC TTGTCTGGCATGACGGGGGAGGTTTGTATGGTGTTAATATAATAGGGAAT ATATTGGCACCGCACTGTTTCGCGCTCTCTTGCCTTGAATCCGTCGGCTC GTTGGCAAGTACCTGGTATGTATAGTATGTATATAATAGTATGTATATAT GTACAAGACGTTACATTTAATCGCAAACAAAGGTGCATGGTACTAGTGAT AAATGGCATGTTTGGTATGCGTCCGTTACTCGAAAAGCTATGTTATGCGG TAGCAACTGACAGTATGGGAGACTTGCTTCTCTTCGCAACGGTTGAACAA AAATGTTTGGTAGTACTACGGTTGTTCGTCCTTCAATTTTTTTGTTGGAT GGCAACCCCTTTCCCCGCCCCTCAACTAGTACTACCGTTTCAGTAAGCTG TTAATATATTGGCGTTCTCGCGCTCTCACCCGCTCGCCGACCAGACCGAG ATAGGCAATTCGCTCTTGGCTTCTTTCGGCCAAAACTCGGAGCGCCTTAG CTCTATCGCGGTCCTCGATAAGCCTGGTCACCTCCACACGCGATCGGCGG CTGTGATTGAGATCCTGGCCAGGATGAACATGCCCTGGCCCGCGCTGGCG GTGCTGCTCAAGGCGGTGCCAGAGCCCGTGCGCGACTCCATGTACGGCTG GGTCAGCCGGAACAGGCACGCTTTGGGTACAGAGAGCCAGATGTGTCGTA TACCGGAGGACGATGAAATATCTCGTTTCTTGATGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig667:154201..155138+

>mRNA_F-serratus_M_contig667.17672.1 ID=mRNA_F-serratus_M_contig667.17672.1|Name=mRNA_F-serratus_M_contig667.17672.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig667:154201..155138+ (Fucus serratus male)
CACGCGGTGTTTCAGGGCACGGACAGCGCAGTGGTCCTCTTCGACGGAGA
GTGCAACTTCTGCAACTCGGGCGTGTGGATGATGATCTCCAACTCCGACG
CCAGGAGCATGCGCTTTTGCGCTCAGAACCACGCGGTGTTTCAGGGCACG
GACAGCGCAGTGGTCCTCTTCGACGGAGAGTGCAACTTCTGCAACTCGGG
CGTGTGGATGATGATCTCCAACTCCGACGCCAGGAGCATGCGCTTTTGCG
CTCAGAACACCGAGATAGGCAATTCGCTCTTGGCTTCTTTCGGCCAAAAC
TCGGAGCGCCTTAGCTCTATCGCGGTCCTCGATAAGCCTGGTCACCTCCA
CACGCGATCGGCGGCTGTGATTGAGATCCTGGCCAGGATGAACATGCCCT
GGCCCGCGCTGGCGGTGCTGCTCAAGGCGGTGCCAGAGCCCGTGCGCGAC
TCCATGTACGGCTGGGTCAGCCGGAACAGGCACGCTTTGGGTACAGAGAG
CCAGATGTGTCGTATACCGGAGGACGATGAAATATCTCGTTTCTTGATGT
GAACCGAGATAGGCAATTCGCTCTTGGCTTCTTTCGGCCAAAACTCGGAG
CGCCTTAGCTCTATCGCGGTCCTCGATAAGCCTGGTCACCTCCACACGCG
ATCGGCGGCTGTGATTGAGATCCTGGCCAGGATGAACATGCCCTGGCCCG
CGCTGGCGGTGCTGCTCAAGGCGGTGCCAGAGCCCGTGCGCGACTCCATG
TACGGCTGGGTCAGCCGGAACAGGCACGCTTTGGGTACAGAGAGCCAGAT
GTGTCGTATACCGGAGGACGATGAAATATCTCGTTTCTTGATGTGA
back to top