mRNA_F-serratus_M_contig667.17669.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig667.17669.1
Unique NamemRNA_F-serratus_M_contig667.17669.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig667.17669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig667contigF-serratus_M_contig667:45526..46071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig667.17669.1prot_F-serratus_M_contig667.17669.1Fucus serratus malepolypeptideF-serratus_M_contig667 45709..46014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.4510136-UTR-F-serratus_M_contig667:45525..457081622932044.4510136-UTR-F-serratus_M_contig667:45525..45708Fucus serratus maleUTRF-serratus_M_contig667 45526..45708 +
1690964117.7973645-UTR-F-serratus_M_contig667:45525..457081690964117.7973645-UTR-F-serratus_M_contig667:45525..45708Fucus serratus maleUTRF-serratus_M_contig667 45526..45708 +
1622932044.5082076-UTR-F-serratus_M_contig667:46014..460711622932044.5082076-UTR-F-serratus_M_contig667:46014..46071Fucus serratus maleUTRF-serratus_M_contig667 46015..46071 +
1690964117.8300264-UTR-F-serratus_M_contig667:46014..460711690964117.8300264-UTR-F-serratus_M_contig667:46014..46071Fucus serratus maleUTRF-serratus_M_contig667 46015..46071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.474295-CDS-F-serratus_M_contig667:45708..460141622932044.474295-CDS-F-serratus_M_contig667:45708..46014Fucus serratus maleCDSF-serratus_M_contig667 45709..46014 +
1690964117.8123808-CDS-F-serratus_M_contig667:45708..460141690964117.8123808-CDS-F-serratus_M_contig667:45708..46014Fucus serratus maleCDSF-serratus_M_contig667 45709..46014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig667.17669.1

>prot_F-serratus_M_contig667.17669.1 ID=prot_F-serratus_M_contig667.17669.1|Name=mRNA_F-serratus_M_contig667.17669.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MPGPWPALPAALTPVPPASSPPPLLTPPCWTAAVAEPSTSRPMVGGGKAK
KLLPWGCCPPLPSSCMPPSFPWIASIPPSLFVTGCTVPPPPLPPFTLDMS
S*
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mRNA from alignment at F-serratus_M_contig667:45526..46071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig667.17669.1 ID=mRNA_F-serratus_M_contig667.17669.1|Name=mRNA_F-serratus_M_contig667.17669.1|organism=Fucus serratus male|type=mRNA|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig667:45526..46071+ (Fucus serratus male)
CCACCTCTTCGCCTGTCGTCACTCGCGAACGGCGCCCCAGGACCTCCGCC
GCCACTTACGCCTGAGACACCACGGTTAGCTCCACCGGTGTTTCTAGAAC
TATTCGCGAGCGGCACGCCGTATCTTCTGCTCACGCCATCCCCGCCGCCA
CCGGCTCGCGCGCCGCCGTCGTTTTTCTTGTACATGCCCGGCCCTTGGCC
GGCGTTGCCCGCGGCGCTCACACCCGTTCCTCCGGCGTCCAGTCCACCGC
CATTGCTGACGCCGCCGTGCTGGACGGCAGCGGTCGCCGAACCTTCGACA
TCGAGACCCATGGTCGGAGGAGGAAAAGCGAAAAAATTGTTGCCGTGGGG
CTGTTGTCCGCCGCTCCCGTCGAGCTGCATGCCACCTAGCTTTCCTTGGA
TAGCGTCCATCCCACCGTCGCTCTTCGTGACGGGCTGCACGGTGCCACCA
CCGCCACTGCCACCGTTCACCTTAGACATGTCTTCCTGAACTTCGCCGTT
CGACGCGTCCGGAGGGGATGGGAAGCGGAGGGGTACATCAAGTCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig667:45526..46071+

>mRNA_F-serratus_M_contig667.17669.1 ID=mRNA_F-serratus_M_contig667.17669.1|Name=mRNA_F-serratus_M_contig667.17669.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig667:45526..46071+ (Fucus serratus male)
ATGCCCGGCCCTTGGCCGGCGTTGCCCGCGGCGCTCACACCCGTTCCTCC
GGCGTCCAGTCCACCGCCATTGCTGACGCCGCCGTGCTGGACGGCAGCGG
TCGCCGAACCTTCGACATCGAGACCCATGGTCGGAGGAGGAAAAGCGAAA
AAATTGTTGCCGTGGGGCTGTTGTCCGCCGCTCCCGTCGAGCTGCATGCC
ACCTAGCTTTCCTTGGATAGCGTCCATCCCACCGTCGCTCTTCGTGACGG
GCTGCACGGTGCCACCACCGCCACTGCCACCGTTCACCTTAGACATGTCT
TCCTGAATGCCCGGCCCTTGGCCGGCGTTGCCCGCGGCGCTCACACCCGT
TCCTCCGGCGTCCAGTCCACCGCCATTGCTGACGCCGCCGTGCTGGACGG
CAGCGGTCGCCGAACCTTCGACATCGAGACCCATGGTCGGAGGAGGAAAA
GCGAAAAAATTGTTGCCGTGGGGCTGTTGTCCGCCGCTCCCGTCGAGCTG
CATGCCACCTAGCTTTCCTTGGATAGCGTCCATCCCACCGTCGCTCTTCG
TGACGGGCTGCACGGTGCCACCACCGCCACTGCCACCGTTCACCTTAGAC
ATGTCTTCCTGA
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