mRNA_F-serratus_M_contig6660.17662.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6660.17662.1
Unique NamemRNA_F-serratus_M_contig6660.17662.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6660.17662.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.360e-10
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  106 RSIGVDEVLRKNARPLAAIFNQYARSLGNNSK----KMALPDVLRLCDAFELRPCLLSTNEILDAFSSVVLPG 312
            R  GV EVL KNA  L A+++++AR      +     M L DV+R CD+FELRP L+ST EILDA+ ++  PG
Sbjct: 2201 RRSGVHEVLEKNAPSLHAMYSKFARQSTGCERGTVTTMTLCDVIRFCDSFELRPGLVSTREILDAYKTIAFPG 2273
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6660.17662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHY9_ECTSI1.360e-1047.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6660contigF-serratus_M_contig6660:25054..26104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size314
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6660.17662.1prot_F-serratus_M_contig6660.17662.1Fucus serratus malepolypeptideF-serratus_M_contig6660 25054..26104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.9255517-CDS-F-serratus_M_contig6660:25053..251791622932043.9255517-CDS-F-serratus_M_contig6660:25053..25179Fucus serratus maleCDSF-serratus_M_contig6660 25054..25179 +
1690964117.6095016-CDS-F-serratus_M_contig6660:25053..251791690964117.6095016-CDS-F-serratus_M_contig6660:25053..25179Fucus serratus maleCDSF-serratus_M_contig6660 25054..25179 +
1622932043.9457026-CDS-F-serratus_M_contig6660:25586..256571622932043.9457026-CDS-F-serratus_M_contig6660:25586..25657Fucus serratus maleCDSF-serratus_M_contig6660 25587..25657 +
1690964117.6196938-CDS-F-serratus_M_contig6660:25586..256571690964117.6196938-CDS-F-serratus_M_contig6660:25586..25657Fucus serratus maleCDSF-serratus_M_contig6660 25587..25657 +
1622932043.9636087-CDS-F-serratus_M_contig6660:25989..261041622932043.9636087-CDS-F-serratus_M_contig6660:25989..26104Fucus serratus maleCDSF-serratus_M_contig6660 25990..26104 +
1690964117.6291642-CDS-F-serratus_M_contig6660:25989..261041690964117.6291642-CDS-F-serratus_M_contig6660:25989..26104Fucus serratus maleCDSF-serratus_M_contig6660 25990..26104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6660.17662.1

>prot_F-serratus_M_contig6660.17662.1 ID=prot_F-serratus_M_contig6660.17662.1|Name=mRNA_F-serratus_M_contig6660.17662.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MGTDQDEINRSEKTANDYPGGTVPDNRACAARNRSRSIGVDEVLRKNARP
LAAIFNQYARSLGNNSKKMALPDVLRLCDAFELRPCLLSTNEILDAFSSV
VLPG
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mRNA from alignment at F-serratus_M_contig6660:25054..26104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6660.17662.1 ID=mRNA_F-serratus_M_contig6660.17662.1|Name=mRNA_F-serratus_M_contig6660.17662.1|organism=Fucus serratus male|type=mRNA|length=1051bp|location=Sequence derived from alignment at F-serratus_M_contig6660:25054..26104+ (Fucus serratus male)
ATGGGCACGGACCAAGACGAAATCAACAGGAGTGAAAAGACGGCGAATGA
TTACCCCGGGGGAACAGTTCCCGACAACAGAGCCTGCGCTGCGCGCAATA
GAAGTCGGTCGATTGGCGTTGATGAGGTGACCATATTCGAAATAGCAAAG
TACAGAACAGTAAAACGCAGCACACTATAGAACGGTGCGTCATAGCCCAG
GACAGTTTAGCTCAGCGAATAACAAAGAGTGGTTCATTCCGTGTTCAGTC
ACCAAGTTTCCTCCCAACAGACCGGGCTTAACAAACCTTCATTTTGTTCA
CGAGCGAGTGCATATACAACCATTATACTAGGTATACCTTTCCAACAATA
CGTTTCCAACCGGGACGGTCAGTAGAGAGCTGTGTGGTTATACTGGTTGC
GGCCGGCTTGTATTTGGCACGGTACCTCTTTGTCAGCGGCGTGACGTTGA
TCTTTCAGCTTTTATCTACCCGTCGCTGCTACCTGATGGCCTATCTTGAC
GCTGTTTCCCCCCGCAAACTCGGCGCGGTAAAGGTGCTGAGGAAGAACGC
AAGGCCTCTGGCAGCTATTTTCAACCAATATGCCCGATCGTTGGGCAACA
ACAGGTGATATACTCAAAAGTACTTTGAAGTATATAATGCCAGTCATATT
GCCTCCATATAATATCCTTACTGATTTTTGTTGGTCGGGTTTCCTGACCT
TCGCTGCCACTGGACAGGGGATCTCTAAGGAGATGTTTTGGTAGCTTCAC
ATCGCATTGAAGCGAAGTGATTAGTTACCCATGATAACCCACCAGTTAAG
TATTTGGCCCGATATAAACAGGATACCTTTAAATACGGCCGTTGACAATA
ACGGCGGCGAAATAGCTCTTCTCGAACGCCGCTATATTCCAAACTGCCGC
CCAATGCGCTCCCTTAAACTGCGATGTTTCTCGTAGCAAAAAGATGGCGT
TGCCGGATGTCCTGCGGCTTTGCGATGCCTTCGAGCTTCGACCGTGCCTG
CTGTCTACGAACGAAATCCTGGACGCCTTTTCGAGCGTGGTATTGCCGGG
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig6660:25054..26104+

>mRNA_F-serratus_M_contig6660.17662.1 ID=mRNA_F-serratus_M_contig6660.17662.1|Name=mRNA_F-serratus_M_contig6660.17662.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig6660:25054..26104+ (Fucus serratus male)
ATGGGCACGGACCAAGACGAAATCAACAGGAGTGAAAAGACGGCGAATGA
TTACCCCGGGGGAACAGTTCCCGACAACAGAGCCTGCGCTGCGCGCAATA
GAAGTCGGTCGATTGGCGTTGATGAGATGGGCACGGACCAAGACGAAATC
AACAGGAGTGAAAAGACGGCGAATGATTACCCCGGGGGAACAGTTCCCGA
CAACAGAGCCTGCGCTGCGCGCAATAGAAGTCGGTCGATTGGCGTTGATG
AGGTGCTGAGGAAGAACGCAAGGCCTCTGGCAGCTATTTTCAACCAATAT
GCCCGATCGTTGGGCAACAACAGGTGCTGAGGAAGAACGCAAGGCCTCTG
GCAGCTATTTTCAACCAATATGCCCGATCGTTGGGCAACAACAGCAAAAA
GATGGCGTTGCCGGATGTCCTGCGGCTTTGCGATGCCTTCGAGCTTCGAC
CGTGCCTGCTGTCTACGAACGAAATCCTGGACGCCTTTTCGAGCGTGGTA
TTGCCGGGACAAAAAGATGGCGTTGCCGGATGTCCTGCGGCTTTGCGATG
CCTTCGAGCTTCGACCGTGCCTGCTGTCTACGAACGAAATCCTGGACGCC
TTTTCGAGCGTGGTATTGCCGGGA
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