mRNA_F-serratus_M_contig666.17659.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig666.17659.1
Unique NamemRNA_F-serratus_M_contig666.17659.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig666.17659.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  211 KQTSLDMFGDHDAAQLRKTLRLFEAARLLNFAYAKQHQLGPTDVDILEKVFPFVTPAGLHELVIEKD 411
            +Q   D  GDH  A+ R  +R+F+AAR+LNF     H +  +DV +L +VFPFVT A +HELV+EKD
Sbjct:  363 RQYVFDRIGDHPEAKERNAIRVFKAARILNFRVVTGHGVEESDVHVLAEVFPFVTTAMVHELVVEKD 429
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BLAST of mRNA_F-serratus_M_contig666.17659.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.680e-8
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   28 VSTWERVKQFPNHTLDAVKGGVYCQACNKGLNKDKKSIVGNHCKGDLHLKAVVHFARKKHAKQTSLDMFGDHDAA 252
            V+  +RVK+FPN TL A  G ++C+AC++      KS V  H  G  H++AV    + K  +Q S+D+F +H A+
Sbjct:  165 VTAVDRVKEFPNQTLIAENGKLFCEACSRKPLAKIKSTVKKHVNGRKHMEAVKKHQKSKKLQQASMDVFREHSAS 239
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BLAST of mRNA_F-serratus_M_contig666.17659.1 vs. uniprot
Match: A0A6H5K1T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.840e-7
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  226 DMFGDHDAAQLRKTLRLFEAARLLNFAYAKQHQLGPTDVDILEKVFPFVT 375
            +  GDH  A+ R+++ LF+AARL +F Y KQHQL   D+D+L++ FPFV+
Sbjct:   22 ERIGDHPNAEQRESIALFQAARLFDFRYVKQHQLNVADIDLLDR-FPFVS 70
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig666.17659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSI8_9PHAE2.400e-1149.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JIR3_9PHAE1.680e-838.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1T8_9PHAE2.840e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig666contigF-serratus_M_contig666:388618..389549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig666.17659.1prot_F-serratus_M_contig666.17659.1Fucus serratus malepolypeptideF-serratus_M_contig666 388624..389549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.6725357-UTR-F-serratus_M_contig666:388617..3886231622932043.6725357-UTR-F-serratus_M_contig666:388617..388623Fucus serratus maleUTRF-serratus_M_contig666 388618..388623 +
1690964117.4898953-UTR-F-serratus_M_contig666:388617..3886231690964117.4898953-UTR-F-serratus_M_contig666:388617..388623Fucus serratus maleUTRF-serratus_M_contig666 388618..388623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.6990328-CDS-F-serratus_M_contig666:388623..3888331622932043.6990328-CDS-F-serratus_M_contig666:388623..388833Fucus serratus maleCDSF-serratus_M_contig666 388624..388833 +
1690964117.513562-CDS-F-serratus_M_contig666:388623..3888331690964117.513562-CDS-F-serratus_M_contig666:388623..388833Fucus serratus maleCDSF-serratus_M_contig666 388624..388833 +
1622932043.7211244-CDS-F-serratus_M_contig666:389351..3895491622932043.7211244-CDS-F-serratus_M_contig666:389351..389549Fucus serratus maleCDSF-serratus_M_contig666 389352..389549 +
1690964117.5277586-CDS-F-serratus_M_contig666:389351..3895491690964117.5277586-CDS-F-serratus_M_contig666:389351..389549Fucus serratus maleCDSF-serratus_M_contig666 389352..389549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig666.17659.1

>prot_F-serratus_M_contig666.17659.1 ID=prot_F-serratus_M_contig666.17659.1|Name=mRNA_F-serratus_M_contig666.17659.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MKALRARVSTWERVKQFPNHTLDAVKGGVYCQACNKGLNKDKKSIVGNHC
KGDLHLKAVVHFARKKHAKQTSLDMFGDHDAAQLRKTLRLFEAARLLNFA
YAKQHQLGPTDVDILEKVFPFVTPAGLHELVIEKD*
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mRNA from alignment at F-serratus_M_contig666:388618..389549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig666.17659.1 ID=mRNA_F-serratus_M_contig666.17659.1|Name=mRNA_F-serratus_M_contig666.17659.1|organism=Fucus serratus male|type=mRNA|length=932bp|location=Sequence derived from alignment at F-serratus_M_contig666:388618..389549+ (Fucus serratus male)
GGGAGGATGAAGGCTCTTCGGGCGAGAGTCAGTACTTGGGAGAGAGTGAA
GCAGTTCCCGAACCACACTCTGGACGCGGTGAAAGGCGGCGTTTATTGCC
AGGCCTGCAACAAGGGGTTGAACAAGGACAAGAAATCGATCGTGGGTAAC
CACTGCAAGGGGGACCTACATCTCAAGGCCGTGGTGCACTTTGCGAGAAA
GAAACACGCCAAGCAGGTGATTTTGCCGTTTTAAATTTTAATTTTTTGAT
TGAACATTGAACCCACCTCGTCGTGCCTTGTCCGGTGGTCTGGTAAAAAA
CATTAAATGGTGTTTTCTCAATGCTCAACACCTAACACTGGAGAAAGTTG
CCGACTGAAGCCTTTCGGCCAACAGCCTGCAGGTATATCAGAATAGGATA
TCAAAAATTATACAGCAGTATACGGTAGTACTGGCATAGTACACAACTTC
AACTGCATGGAGGGATGGAGAAGGTGAGTTTTGTTTCTAAGATATTGTGC
GTATTACATGTGTGGTTTTGAATGTCTTATGTTGTGTGTGGTGTGTAGCG
ACGGCCGAAAAAGGGACTGCTGCCTGTTTCCATAAATGTGCAAAATACAA
GAATGAAATGACACCAACACTAACGGCTGATTCTCCACCTGTTACTGCTG
CTGCTCTCAATTTTTCTGTCGCATCATTATGTCTCTGCACACAACTGCGC
GCGCACGCTCCACGCATTTCTTCTGACTTCACAGACTTCGCTGGATATGT
TCGGGGACCACGACGCAGCCCAACTGCGCAAGACTCTTCGGCTGTTCGAG
GCCGCGAGACTCCTCAACTTCGCGTACGCGAAGCAGCATCAATTGGGCCC
TACGGACGTCGACATCCTCGAAAAAGTATTTCCGTTCGTGACACCAGCCG
GGCTTCATGAGCTCGTGATAGAGAAGGATTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig666:388618..389549+

>mRNA_F-serratus_M_contig666.17659.1 ID=mRNA_F-serratus_M_contig666.17659.1|Name=mRNA_F-serratus_M_contig666.17659.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig666:388618..389549+ (Fucus serratus male)
ATGAAGGCTCTTCGGGCGAGAGTCAGTACTTGGGAGAGAGTGAAGCAGTT
CCCGAACCACACTCTGGACGCGGTGAAAGGCGGCGTTTATTGCCAGGCCT
GCAACAAGGGGTTGAACAAGGACAAGAAATCGATCGTGGGTAACCACTGC
AAGGGGGACCTACATCTCAAGGCCGTGGTGCACTTTGCGAGAAAGAAACA
CGCCAAGCAGATGAAGGCTCTTCGGGCGAGAGTCAGTACTTGGGAGAGAG
TGAAGCAGTTCCCGAACCACACTCTGGACGCGGTGAAAGGCGGCGTTTAT
TGCCAGGCCTGCAACAAGGGGTTGAACAAGGACAAGAAATCGATCGTGGG
TAACCACTGCAAGGGGGACCTACATCTCAAGGCCGTGGTGCACTTTGCGA
GAAAGAAACACGCCAAGCAGACTTCGCTGGATATGTTCGGGGACCACGAC
GCAGCCCAACTGCGCAAGACTCTTCGGCTGTTCGAGGCCGCGAGACTCCT
CAACTTCGCGTACGCGAAGCAGCATCAATTGGGCCCTACGGACGTCGACA
TCCTCGAAAAAGTATTTCCGTTCGTGACACCAGCCGGGCTTCATGAGCTC
GTGATAGAGAAGGATTAGACTTCGCTGGATATGTTCGGGGACCACGACGC
AGCCCAACTGCGCAAGACTCTTCGGCTGTTCGAGGCCGCGAGACTCCTCA
ACTTCGCGTACGCGAAGCAGCATCAATTGGGCCCTACGGACGTCGACATC
CTCGAAAAAGTATTTCCGTTCGTGACACCAGCCGGGCTTCATGAGCTCGT
GATAGAGAAGGATTAG
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