mRNA_F-serratus_M_contig6657.17657.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6657.17657.1
Unique NamemRNA_F-serratus_M_contig6657.17657.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.080e-20
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SG++RHSDKHA   IP+AQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 3.990e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SGV+ HS +HA  +IPEAQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 4.600e-17
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV+ HSDKHA  + P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 5.440e-17
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV  HSDKHA  N P+AQ AFKILMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:   45 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRYMV 185
            PGSARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R +V
Sbjct:    6 PGSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYRCVV 52
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 67.8 bits (164), Expect = 3.600e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   45 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 170
            PGSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL
Sbjct:  127 PGSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVL 168
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: A0A1Y2ACV0_9TREE (Uncharacterized protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2ACV0_9TREE)

HSP 1 Score: 63.2 bits (152), Expect = 6.600e-12
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   45 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRYMV 185
            P  ARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL  Y++
Sbjct:    6 PKGARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLLDYII 52
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 7.540e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 170
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 7.710e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 170
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 1.050e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 170
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6657.17657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA3.080e-2073.58Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT3.990e-1871.70Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS4.600e-1772.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC5.440e-1772.55Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K5UIC4_PHACS2.550e-1372.34Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A0E9NCQ7_SAICN3.600e-1278.57Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A1Y2ACV0_9TREE6.600e-1268.09Uncharacterized protein n=1 Tax=Naematelia encepha... [more]
R1EX34_EMIHU7.540e-1264.71Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU7.710e-1264.71Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU1.050e-1164.71Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6657contigF-serratus_M_contig6657:19774..19958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog35128.Thaps30335
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2F8R5@1,2T9VT@2759,2XH3Y@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size185
Cds size162
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.365504-UTR-F-serratus_M_contig6657:19773..197961622932043.365504-UTR-F-serratus_M_contig6657:19773..19796Fucus serratus maleUTRF-serratus_M_contig6657 19774..19796 -
1690964117.3514388-UTR-F-serratus_M_contig6657:19773..197961690964117.3514388-UTR-F-serratus_M_contig6657:19773..19796Fucus serratus maleUTRF-serratus_M_contig6657 19774..19796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.3846464-CDS-F-serratus_M_contig6657:19796..199581622932043.3846464-CDS-F-serratus_M_contig6657:19796..19958Fucus serratus maleCDSF-serratus_M_contig6657 19797..19958 -
1690964117.3657436-CDS-F-serratus_M_contig6657:19796..199581690964117.3657436-CDS-F-serratus_M_contig6657:19796..19958Fucus serratus maleCDSF-serratus_M_contig6657 19797..19958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6657.17657.1prot_F-serratus_M_contig6657.17657.1Fucus serratus malepolypeptideF-serratus_M_contig6657 19797..19958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6657.17657.1

>prot_F-serratus_M_contig6657.17657.1 ID=prot_F-serratus_M_contig6657.17657.1|Name=mRNA_F-serratus_M_contig6657.17657.1|organism=Fucus serratus male|type=polypeptide|length=54bp
SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQD
IRR*
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mRNA from alignment at F-serratus_M_contig6657:19774..19958-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6657.17657.1 ID=mRNA_F-serratus_M_contig6657.17657.1|Name=mRNA_F-serratus_M_contig6657.17657.1|organism=Fucus serratus male|type=mRNA|length=185bp|location=Sequence derived from alignment at F-serratus_M_contig6657:19774..19958- (Fucus serratus male)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGA
AGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGAAAGTTTTACAACGTTATATGGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6657:19774..19958-

>mRNA_F-serratus_M_contig6657.17657.1 ID=mRNA_F-serratus_M_contig6657.17657.1|Name=mRNA_F-serratus_M_contig6657.17657.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig6657:19774..19958- (Fucus serratus male)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGA
AGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGAAGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAG
GAATATCCCGGAAGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGA
TTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGT
GGGAGCCAAGACATCCGTCGCTGA
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