mRNA_F-serratus_M_contig664.17647.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig664.17647.1
Unique NamemRNA_F-serratus_M_contig664.17647.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig664.17647.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-10
Identity = 47/98 (47.96%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:    3 GVAMGVGGPGDLQQLQDIHIQGLYNHAAAAAAAGYFVTPGGQSLPVHLLAEMSGGGGSW-----------YPEQ---HSSPVPMAWG-AGDGVVAGHG 251
            GV MGV GPGD+Q      IQG+YN     AAAGYFVTPG Q LP+H+ AEM    G             YP+Q   HSSPVP+ W  AG+G     G
Sbjct:  825 GVGMGVAGPGDMQ------IQGIYN----PAAAGYFVTPGAQQLPMHVAAEMVAASGXXXXXXXXXXXXXYPDQXXQHSSPVPVPWSVAGEGAAPSAG 912
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig664.17647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE2.100e-1047.96Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig664contigF-serratus_M_contig664:291980..294526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001940.1
Exons5
Model size923
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.4499872-UTR-F-serratus_M_contig664:291979..2922281622932041.4499872-UTR-F-serratus_M_contig664:291979..292228Fucus serratus maleUTRF-serratus_M_contig664 291980..292228 -
1690964116.6191478-UTR-F-serratus_M_contig664:291979..2922281690964116.6191478-UTR-F-serratus_M_contig664:291979..292228Fucus serratus maleUTRF-serratus_M_contig664 291980..292228 -
1622932041.5663722-UTR-F-serratus_M_contig664:294515..2945261622932041.5663722-UTR-F-serratus_M_contig664:294515..294526Fucus serratus maleUTRF-serratus_M_contig664 294516..294526 -
1690964116.680442-UTR-F-serratus_M_contig664:294515..2945261690964116.680442-UTR-F-serratus_M_contig664:294515..294526Fucus serratus maleUTRF-serratus_M_contig664 294516..294526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.4691565-CDS-F-serratus_M_contig664:292228..2922501622932041.4691565-CDS-F-serratus_M_contig664:292228..292250Fucus serratus maleCDSF-serratus_M_contig664 292229..292250 -
1690964116.6291687-CDS-F-serratus_M_contig664:292228..2922501690964116.6291687-CDS-F-serratus_M_contig664:292228..292250Fucus serratus maleCDSF-serratus_M_contig664 292229..292250 -
1622932041.485267-CDS-F-serratus_M_contig664:292375..2924791622932041.485267-CDS-F-serratus_M_contig664:292375..292479Fucus serratus maleCDSF-serratus_M_contig664 292376..292479 -
1690964116.638383-CDS-F-serratus_M_contig664:292375..2924791690964116.638383-CDS-F-serratus_M_contig664:292375..292479Fucus serratus maleCDSF-serratus_M_contig664 292376..292479 -
1622932041.5067272-CDS-F-serratus_M_contig664:293305..2936441622932041.5067272-CDS-F-serratus_M_contig664:293305..293644Fucus serratus maleCDSF-serratus_M_contig664 293306..293644 -
1690964116.648345-CDS-F-serratus_M_contig664:293305..2936441690964116.648345-CDS-F-serratus_M_contig664:293305..293644Fucus serratus maleCDSF-serratus_M_contig664 293306..293644 -
1622932041.5242276-CDS-F-serratus_M_contig664:293909..2940531622932041.5242276-CDS-F-serratus_M_contig664:293909..294053Fucus serratus maleCDSF-serratus_M_contig664 293910..294053 -
1690964116.6587503-CDS-F-serratus_M_contig664:293909..2940531690964116.6587503-CDS-F-serratus_M_contig664:293909..294053Fucus serratus maleCDSF-serratus_M_contig664 293910..294053 -
1622932041.5465152-CDS-F-serratus_M_contig664:294461..2945151622932041.5465152-CDS-F-serratus_M_contig664:294461..294515Fucus serratus maleCDSF-serratus_M_contig664 294462..294515 -
1690964116.6695094-CDS-F-serratus_M_contig664:294461..2945151690964116.6695094-CDS-F-serratus_M_contig664:294461..294515Fucus serratus maleCDSF-serratus_M_contig664 294462..294515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig664.17647.1prot_F-serratus_M_contig664.17647.1Fucus serratus malepolypeptideF-serratus_M_contig664 292229..294515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig664.17647.1

>prot_F-serratus_M_contig664.17647.1 ID=prot_F-serratus_M_contig664.17647.1|Name=mRNA_F-serratus_M_contig664.17647.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MGVGGPGDLQQLQDIHIQGLYNHAAAAAAAGYFVTPGGQSLPVHLLAEMS
GGGGSWYPEQHSSPVPMAWGAGDGVVAGHGSGAVLSEDVVLPPQSDSWMR
AAVQQELLREQQQQQLHDQAVAHQYQQQQQQQQQQQYAAAVSTAAATGTA
AAPGTARLGFGGVAPPGLDMSQQPLLNAQAMSFQPPVAGSADPSQSGGSG
DAYYTAQMRQQQQHWPRLLL*
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mRNA from alignment at F-serratus_M_contig664:291980..294526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig664.17647.1 ID=mRNA_F-serratus_M_contig664.17647.1|Name=mRNA_F-serratus_M_contig664.17647.1|organism=Fucus serratus male|type=mRNA|length=2547bp|location=Sequence derived from alignment at F-serratus_M_contig664:291980..294526- (Fucus serratus male)
CGGGGGTGGCAATGGGGGTCGGGGGACCGGGAGACCTCCAGCAGTTGCAA
GACATTCATATTCAGGTGAGAAGTCGGGGGGGGGGGGGGGGGGGGAAGAG
AATTTGCCTTACGAGGCCTTTTGTCTTTACTCCGCGTTGGTATTGCGCCT
TGAGCCTTGAGCCTTGAGAAGGGTTTGTCATCCGAATTATTGTGTATTTA
CTCCGGGTTGGCGTTGTGCCTTGCGCCTTGCGCGCCATTTTGTAGTCGCG
CGCAGGCGGCCTCGCTATGAAGTACAGTACAGTACAGTATAGTATAGTAT
AGTACGTATCAAAACTGGCTCTTCTCTTAGCCGATGGTTTTATGCCAATA
AGGAACTAGTGTGGAGAGCAGTAGCTGCAGCAGCAGCAAAAGGAGAGCCT
GTGGCATAGATGGGCGACCTCGTGCCAGCTCGATCTCCCGCGAAACCCTT
GCCTTGTATGTCAAAATGAACAGGGCCTCTACAACCACGCCGCTGCTGCC
GCCGCCGCTGGCTACTTTGTCACTCCCGGCGGGCAGTCGCTCCCGGTCCA
TCTCTTGGCGGAGATGTCGGGAGGGGGGGGAAGCTGGTACCCGGAGCAGC
ACTCCAGTCCCGTACCGGTGAGGCTTCACACTCTGGAAAAGGTTATCCTG
CTGCTTGAGTCCCCTCGATTTACAACAACAGTAGAGCTTGATGTGGAAAA
GCAAGGATAGCAGGTAGCGAGTGCTAGTGCTAGGTTGTGCACAGGTTATG
CTATTAGATCGGGTGGAGAAAGCCTCGTGCCAGATCTTGGGTGCTATTGT
TTTTTCAATATTTTCGACCAAGCCCCTCGATCGCACTCCTCGCCAGGTCG
CTCACAGAACCCCTCCCGCCCCTACTCGGCAGATGGCGTGGGGGGCCGGC
GACGGCGTGGTCGCCGGGCATGGATCTGGGGCGGTACTTAGCGAAGACGT
GGTGCTGCCTCCCCAGTCCGACAGCTGGATGAGGGCGGCGGTGCAACAGG
AACTGCTGAGGGAGCAACAACAGCAGCAGCTTCATGATCAAGCGGTGGCG
CATCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACGCCGC
GGCTGTCTCTACCGCCGCCGCCACCGGCACTGCCGCAGCGCCAGGGACAG
CCAGATTAGGCTTTGGCGGGGTGGCGCCTCCGGGGCTGGACATGTCTCAG
CAGCCGCTGCTCAACGCTCAGGTCTGGTCTCAAGCCAGCTACTCTTGTAC
TAGATGCCTCGAATCCAATCTAATTAAATCAAACCAAGCCACATCGAAAG
TATGCAGACCCTTGGTGATGAGTTGCTTTCGATAGTGTTTGGGAGGTTTG
GGAGGTTTTTGTCCTGTTTGTTGTTTTGTTTATTGAATACAATACAATAC
AATACAATACAATACAATATCTGTACAATACAATCGTTTTGTTCTGTTTT
TGTTTTCCTTCTTTTGTCTTTTCGACGTTGGTAGACGTTGGTAGACGTTG
GTAGACGTTGAGGCCCATGCAGCACGCGCGGTATGAGTCGTCAATAATCC
CTGCCATCGTTATAGAGCAAACGCCTCTTTTCTTCTTTCTCAAATTTATT
TAGCGAGAGAGGGTAGATGGAAGCTCCGTGGGTGATTTCTTTGAGCCAAT
CGCCAAGGCAGACAGCATGTGTACCTACAGCGTCGTCAGCTGTTTTATGT
TCATGCTGCACAAGTACTGACGACACACAAGTTTGTGGCAGCACTGTTGA
AGACAAGTAACTGCTGCACAGTATTAGGCAACTATGTATCAAGTGGTTAC
CGTATTACTAACATGTGTAGCACTATTTGGCATCTATTCGCCTTCGCCGT
CCCGTTTTTTGTGGGCGCCCAAGCCTAAGCTCGTCGAAGCCCGCCGCGTT
GTTCAGAATACGTTCCGCACAACTCCGTGCATATGTACTATATATATATA
TATATATATGTGTGTAAAGTGGTGCTCAAACGTTTTTCACTCGACTCATT
GTTCTCCGCGGCGCTACATGTGTAAAATGTAAATGAATGCACGTCAGGCC
ATGTCCTTCCAGCCTCCGGTCGCTGGAAGCGCAGACCCTTCCCAGAGTGG
CGGCTCTGGTGACGCCTACTACACCGCTCAGATGCGGCAGCAGCAGCAGC
AGCAACAGCAGCAGCAGCAGCAGCAACATCAGCAACATCAGCAACATCGG
AACCAGCGGTAGAAGCGGTAGCAGCAATAGTAGCAGCAGCAAGAACTGGC
GGAGAGAAGTAGGGAGCACACGTGGGCTGGCCGAGACTCCTTCTCTAATC
CTACTGTTCAAATCTGCGGCCACCGTTCTCTCGCCTCTCAATATCACTAA
TAGTGTTGTAATTCATTCCTTGATGATAACAGGAGGACGGGATGTCCAAG
CGGACTATAGATATGGCGTGCTGACTTTAGGGGCGAGGGGGCAAGGGATG
CGAAGACGGGGAAAGAGGTCACGTCGTTGTTATGGAGTGTCTGTCCTATT
CGCGCGCTTTTTTCTCTTTTTGTTTTTTTGTGATGGGTAATGTTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig664:291980..294526-

>mRNA_F-serratus_M_contig664.17647.1 ID=mRNA_F-serratus_M_contig664.17647.1|Name=mRNA_F-serratus_M_contig664.17647.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig664:291980..294526- (Fucus serratus male)
ATGGGGGTCGGGGGACCGGGAGACCTCCAGCAGTTGCAAGACATTCATAT
TCAGATGGGGGTCGGGGGACCGGGAGACCTCCAGCAGTTGCAAGACATTC
ATATTCAGGGCCTCTACAACCACGCCGCTGCTGCCGCCGCCGCTGGCTAC
TTTGTCACTCCCGGCGGGCAGTCGCTCCCGGTCCATCTCTTGGCGGAGAT
GTCGGGAGGGGGGGGAAGCTGGTACCCGGAGCAGCACTCCAGTCCCGTAC
CGGGCCTCTACAACCACGCCGCTGCTGCCGCCGCCGCTGGCTACTTTGTC
ACTCCCGGCGGGCAGTCGCTCCCGGTCCATCTCTTGGCGGAGATGTCGGG
AGGGGGGGGAAGCTGGTACCCGGAGCAGCACTCCAGTCCCGTACCGATGG
CGTGGGGGGCCGGCGACGGCGTGGTCGCCGGGCATGGATCTGGGGCGGTA
CTTAGCGAAGACGTGGTGCTGCCTCCCCAGTCCGACAGCTGGATGAGGGC
GGCGGTGCAACAGGAACTGCTGAGGGAGCAACAACAGCAGCAGCTTCATG
ATCAAGCGGTGGCGCATCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAATACGCCGCGGCTGTCTCTACCGCCGCCGCCACCGGCACTGCCGC
AGCGCCAGGGACAGCCAGATTAGGCTTTGGCGGGGTGGCGCCTCCGGGGC
TGGACATGTCTCAGCAGCCGCTGCTCAACGCTCAGATGGCGTGGGGGGCC
GGCGACGGCGTGGTCGCCGGGCATGGATCTGGGGCGGTACTTAGCGAAGA
CGTGGTGCTGCCTCCCCAGTCCGACAGCTGGATGAGGGCGGCGGTGCAAC
AGGAACTGCTGAGGGAGCAACAACAGCAGCAGCTTCATGATCAAGCGGTG
GCGCATCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACGC
CGCGGCTGTCTCTACCGCCGCCGCCACCGGCACTGCCGCAGCGCCAGGGA
CAGCCAGATTAGGCTTTGGCGGGGTGGCGCCTCCGGGGCTGGACATGTCT
CAGCAGCCGCTGCTCAACGCTCAGGCCATGTCCTTCCAGCCTCCGGTCGC
TGGAAGCGCAGACCCTTCCCAGAGTGGCGGCTCTGGTGACGCCTACTACA
CCGCTCAGATGCGGCAGCAGCAGCAGCAGCCATGTCCTTCCAGCCTCCGG
TCGCTGGAAGCGCAGACCCTTCCCAGAGTGGCGGCTCTGGTGACGCCTAC
TACACCGCTCAGATGCGGCAGCAGCAGCAGCACTGGCCGAGACTCCTTCT
CTAACTGGCCGAGACTCCTTCTCTAA
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