mRNA_F-serratus_M_contig6637.17642.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6637.17642.1
Unique NamemRNA_F-serratus_M_contig6637.17642.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6637.17642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6637contigF-serratus_M_contig6637:12584..13875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1292
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6637.17642.1prot_F-serratus_M_contig6637.17642.1Fucus serratus malepolypeptideF-serratus_M_contig6637 12598..13362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.2230785-UTR-F-serratus_M_contig6637:12583..125971622932041.2230785-UTR-F-serratus_M_contig6637:12583..12597Fucus serratus maleUTRF-serratus_M_contig6637 12584..12597 +
1690964116.5657725-UTR-F-serratus_M_contig6637:12583..125971690964116.5657725-UTR-F-serratus_M_contig6637:12583..12597Fucus serratus maleUTRF-serratus_M_contig6637 12584..12597 +
1622932041.273748-UTR-F-serratus_M_contig6637:13362..138751622932041.273748-UTR-F-serratus_M_contig6637:13362..13875Fucus serratus maleUTRF-serratus_M_contig6637 13363..13875 +
1690964116.5835931-UTR-F-serratus_M_contig6637:13362..138751690964116.5835931-UTR-F-serratus_M_contig6637:13362..13875Fucus serratus maleUTRF-serratus_M_contig6637 13363..13875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.246793-CDS-F-serratus_M_contig6637:12597..133621622932041.246793-CDS-F-serratus_M_contig6637:12597..13362Fucus serratus maleCDSF-serratus_M_contig6637 12598..13362 +
1690964116.5751164-CDS-F-serratus_M_contig6637:12597..133621690964116.5751164-CDS-F-serratus_M_contig6637:12597..13362Fucus serratus maleCDSF-serratus_M_contig6637 12598..13362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6637.17642.1

>prot_F-serratus_M_contig6637.17642.1 ID=prot_F-serratus_M_contig6637.17642.1|Name=mRNA_F-serratus_M_contig6637.17642.1|organism=Fucus serratus male|type=polypeptide|length=255bp
MMSLDQTLQDILNLDPRSTGQSLSWAPGWHVPLRKSLWDSVNPRSARSSS
LNAMLNSCMEQVERAMDAGSSGEEAYRLLVAELKRELDTRVCGAALQKLI
SFRVGEGVPFSECYRTFRMVVHDAKSDGEFAANFNIVQSIVSVLMSQQYP
TLYEITFPRHTPNRYFVEEEQMWKALDLLKRSVTRSLPPRSDTGGRGASA
GGMPGASSSTTKGASKAGAAWVPDSIMNVKKDAFTADFPSWPASHETWYT
IYNI*
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mRNA from alignment at F-serratus_M_contig6637:12584..13875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6637.17642.1 ID=mRNA_F-serratus_M_contig6637.17642.1|Name=mRNA_F-serratus_M_contig6637.17642.1|organism=Fucus serratus male|type=mRNA|length=1292bp|location=Sequence derived from alignment at F-serratus_M_contig6637:12584..13875+ (Fucus serratus male)
GTTTCGTTGAGTTCATGATGTCGCTCGACCAAACTCTCCAAGACATTCTT
AATCTCGATCCACGATCAACTGGCCAATCATTATCATGGGCGCCGGGGTG
GCACGTGCCGCTCAGAAAAAGCCTATGGGATTCGGTTAATCCGCGATCCG
CACGATCGTCTTCCCTCAACGCGATGCTGAATTCGTGCATGGAGCAGGTC
GAAAGAGCTATGGACGCTGGTAGCTCGGGAGAGGAAGCCTACAGGCTGTT
AGTGGCAGAGCTCAAGAGGGAGCTCGACACGAGGGTATGCGGCGCGGCAC
TGCAGAAGTTGATATCGTTTCGCGTAGGGGAGGGCGTCCCCTTCTCCGAG
TGCTATCGTACTTTTAGGATGGTCGTACACGACGCTAAGAGTGACGGAGA
ATTTGCTGCAAACTTCAATATCGTCCAGTCAATAGTATCGGTATTGATGA
GTCAACAGTACCCTACTTTGTACGAGATCACTTTCCCGAGGCACACACCA
AATCGGTACTTTGTAGAAGAGGAACAAATGTGGAAAGCGTTAGATCTGCT
CAAGAGGAGTGTGACCAGGTCACTACCTCCACGTAGTGATACAGGGGGAC
GTGGGGCTAGTGCGGGAGGTATGCCAGGTGCTAGCTCGAGCACTACGAAA
GGCGCTAGTAAGGCAGGTGCTGCATGGGTACCGGACTCAATAATGAACGT
GAAAAAAGACGCTTTTACAGCTGATTTTCCCTCGTGGCCGGCTTCTCATG
AAACATGGTATACCATATACAATATCTGAAATGATCGGGAACCACCACTT
CTAGCTCGATTCACCGACCCTAAAACGAGAACAGCTACCTTCAAGAAATT
CATAGGACAATGTCTGAATTGTTTGTCTGAGGATGGTCACAATATGCGAA
CGTGCCCAAAATCATTCATCAACAGAAGCGGACTTATGAACAGCAAGATA
GGTGAACTGCCTGATACGGAAAGAAAAACTATTTGGCGGAGAATTCAAGC
TAGACTAAAGAAAAGAGTCCAGTACAAGCCGAAGGGCCAATCTGCAGGTA
ACACAACAAAGAGCCGTAATGACAAAGACAGGTCGGAAGTTGCCGGGGTA
GTTGATCGAAACAAGAAGTCAGCTAAGACACATGAATCAAGCGACTCTGA
TTCTAACTGACTACACAATGATGGGAAACTGCCTTCTGCCCCATCAATAG
CAATTGAAGGTACAAGTAGAGCCGTTACACATGACAACCGGGCAGGTGTA
AAAAGGATACATTTACCACCAGAATGTTCGCAGAAACGGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6637:12584..13875+

>mRNA_F-serratus_M_contig6637.17642.1 ID=mRNA_F-serratus_M_contig6637.17642.1|Name=mRNA_F-serratus_M_contig6637.17642.1|organism=Fucus serratus male|type=CDS|length=1530bp|location=Sequence derived from alignment at F-serratus_M_contig6637:12584..13875+ (Fucus serratus male)
ATGATGTCGCTCGACCAAACTCTCCAAGACATTCTTAATCTCGATCCACG
ATCAACTGGCCAATCATTATCATGGGCGCCGGGGTGGCACGTGCCGCTCA
GAAAAAGCCTATGGGATTCGGTTAATCCGCGATCCGCACGATCGTCTTCC
CTCAACGCGATGCTGAATTCGTGCATGGAGCAGGTCGAAAGAGCTATGGA
CGCTGGTAGCTCGGGAGAGGAAGCCTACAGGCTGTTAGTGGCAGAGCTCA
AGAGGGAGCTCGACACGAGGGTATGCGGCGCGGCACTGCAGAAGTTGATA
TCGTTTCGCGTAGGGGAGGGCGTCCCCTTCTCCGAGTGCTATCGTACTTT
TAGGATGGTCGTACACGACGCTAAGAGTGACGGAGAATTTGCTGCAAACT
TCAATATCGTCCAGTCAATAGTATCGGTATTGATGAGTCAACAGTACCCT
ACTTTGTACGAGATCACTTTCCCGAGGCACACACCAAATCGGTACTTTGT
AGAAGAGGAACAAATGTGGAAAGCGTTAGATCTGCTCAAGAGGAGTGTGA
CCAGGTCACTACCTCCACGTAGTGATACAGGGGGACGTGGGGCTAGTGCG
GGAGGTATGCCAGGTGCTAGCTCGAGCACTACGAAAGGCGCTAGTAAGGC
AGGTGCTGCATGGGTACCGGACTCAATAATGAACGTGAAAAAAGACGCTT
TTACAGCTGATTTTCCCTCGTGGCCGGCTTCTCATGAAACATGGTATACC
ATATACAATATCTGAATGATGTCGCTCGACCAAACTCTCCAAGACATTCT
TAATCTCGATCCACGATCAACTGGCCAATCATTATCATGGGCGCCGGGGT
GGCACGTGCCGCTCAGAAAAAGCCTATGGGATTCGGTTAATCCGCGATCC
GCACGATCGTCTTCCCTCAACGCGATGCTGAATTCGTGCATGGAGCAGGT
CGAAAGAGCTATGGACGCTGGTAGCTCGGGAGAGGAAGCCTACAGGCTGT
TAGTGGCAGAGCTCAAGAGGGAGCTCGACACGAGGGTATGCGGCGCGGCA
CTGCAGAAGTTGATATCGTTTCGCGTAGGGGAGGGCGTCCCCTTCTCCGA
GTGCTATCGTACTTTTAGGATGGTCGTACACGACGCTAAGAGTGACGGAG
AATTTGCTGCAAACTTCAATATCGTCCAGTCAATAGTATCGGTATTGATG
AGTCAACAGTACCCTACTTTGTACGAGATCACTTTCCCGAGGCACACACC
AAATCGGTACTTTGTAGAAGAGGAACAAATGTGGAAAGCGTTAGATCTGC
TCAAGAGGAGTGTGACCAGGTCACTACCTCCACGTAGTGATACAGGGGGA
CGTGGGGCTAGTGCGGGAGGTATGCCAGGTGCTAGCTCGAGCACTACGAA
AGGCGCTAGTAAGGCAGGTGCTGCATGGGTACCGGACTCAATAATGAACG
TGAAAAAAGACGCTTTTACAGCTGATTTTCCCTCGTGGCCGGCTTCTCAT
GAAACATGGTATACCATATACAATATCTGA
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