mRNA_F-serratus_M_contig663.17631.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig663.17631.1
Unique NamemRNA_F-serratus_M_contig663.17631.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig663.17631.1 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.590e-21
Identity = 44/53 (83.02%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:  172 LSRKRDPLWDFKKQAALLPLLRRPSLKDLLRHTREAVVCEMDLSHQRVMREGG 330
            L+R+RDPLW +K+QA++LPLL+RPSLKDLLRHTREAVVCEMDLSHQRVMR+GG
Sbjct: 1067 LARQRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGG 1119
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BLAST of mRNA_F-serratus_M_contig663.17631.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.870e-21
Identity = 44/53 (83.02%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:  172 LSRKRDPLWDFKKQAALLPLLRRPSLKDLLRHTREAVVCEMDLSHQRVMREGG 330
            L+R+RDPLW +K+QA++LPLL+RPSLKDLLRHTREAVVCEMDLSHQRVMR+GG
Sbjct: 6674 LARQRDPLWKYKQQASMLPLLQRPSLKDLLRHTREAVVCEMDLSHQRVMRDGG 6726
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig663.17631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMI8_9PHAE6.590e-2183.02C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G8Y9_ECTSI6.870e-2183.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig663contigF-serratus_M_contig663:116080..116745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D7G8Y9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932035.958793-CDS-F-serratus_M_contig663:116080..1161971622932035.958793-CDS-F-serratus_M_contig663:116080..116197Fucus serratus maleCDSF-serratus_M_contig663 116081..116197 -
1690964113.855333-CDS-F-serratus_M_contig663:116080..1161971690964113.855333-CDS-F-serratus_M_contig663:116080..116197Fucus serratus maleCDSF-serratus_M_contig663 116081..116197 -
1622932035.9710424-CDS-F-serratus_M_contig663:116532..1167451622932035.9710424-CDS-F-serratus_M_contig663:116532..116745Fucus serratus maleCDSF-serratus_M_contig663 116533..116745 -
1690964113.8687837-CDS-F-serratus_M_contig663:116532..1167451690964113.8687837-CDS-F-serratus_M_contig663:116532..116745Fucus serratus maleCDSF-serratus_M_contig663 116533..116745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig663.17631.1prot_F-serratus_M_contig663.17631.1Fucus serratus malepolypeptideF-serratus_M_contig663 116081..116745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig663.17631.1

>prot_F-serratus_M_contig663.17631.1 ID=prot_F-serratus_M_contig663.17631.1|Name=mRNA_F-serratus_M_contig663.17631.1|organism=Fucus serratus male|type=polypeptide|length=110bp
AAAVSAQSVDKSIVRRQGAREMVVRAGLDTTHEPEDVEAVTGVRGSGTET
AVADAAELSRKRDPLWDFKKQAALLPLLRRPSLKDLLRHTREAVVCEMDL
SHQRVMREGG
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mRNA from alignment at F-serratus_M_contig663:116080..116745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig663.17631.1 ID=mRNA_F-serratus_M_contig663.17631.1|Name=mRNA_F-serratus_M_contig663.17631.1|organism=Fucus serratus male|type=mRNA|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig663:116080..116745- (Fucus serratus male)
GCTGCTGCTGTTTCAGCACAATCCGTAGACAAAAGTATCGTTCGTAGGCA
GGGAGCCCGGGAGATGGTTGTTCGGGCTGGCCTGGATACCACGCACGAAC
CAGAGGATGTTGAAGCAGTTACGGGGGTTCGTGGGTCTGGCACAGAGACA
GCGGTCGCTGACGCGGCAGAGCTGTCGCGGAAGCGGGACCCCCTGTGGGA
TTTCAAGAAGCAGGTGAGAAATCAATCGCGACACGCTGTTGGGGCGTGGA
TTGGTGTCAGGGGTTGTAGTTATAGTCGACCACAGTCAGCGGGACCGTGT
GTGTACTACGGTATATTTGACTTTAAAAACTTGATTGGAAGGGTGGCGCG
GTACCTGTGTCGTCGAAACGCTTCACGGTTCTCGATGTTCTCAGGTGCTG
CGTCTGTGAATCGTGATGAGAGGAAATCATTTGATCGCGTGAATCATCAA
TACAGCGTGCAAGACAAAACTCACCTCCCGGTTCGGTTCGGTCCGATTTA
TATATATTTTTTCTTTTGGCTATTTGGGGGGGTGGATGGGGGGGGCAGGC
TGCTCTGCTGCCGTTGCTGAGGCGCCCGAGCCTAAAAGATCTGCTGCGAC
ACACGCGAGAGGCCGTGGTTTGCGAGATGGACCTCAGCCACCAAAGAGTT
ATGAGAGAAGGGGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig663:116080..116745-

>mRNA_F-serratus_M_contig663.17631.1 ID=mRNA_F-serratus_M_contig663.17631.1|Name=mRNA_F-serratus_M_contig663.17631.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig663:116080..116745- (Fucus serratus male)
GCTGCTGCTGTTTCAGCACAATCCGTAGACAAAAGTATCGTTCGTAGGCA
GGGAGCCCGGGAGATGGTTGTTCGGGCTGGCCTGGATACCACGCACGAAC
CAGAGGATGTTGAAGCAGTTACGGGGGTTCGTGGGTCTGGCACAGAGACA
GCGGTCGCTGACGCGGCAGAGCTGTCGCGGAAGCGGGACCCCCTGTGGGA
TTTCAAGAAGCAGGCTGCTGCTGTTTCAGCACAATCCGTAGACAAAAGTA
TCGTTCGTAGGCAGGGAGCCCGGGAGATGGTTGTTCGGGCTGGCCTGGAT
ACCACGCACGAACCAGAGGATGTTGAAGCAGTTACGGGGGTTCGTGGGTC
TGGCACAGAGACAGCGGTCGCTGACGCGGCAGAGCTGTCGCGGAAGCGGG
ACCCCCTGTGGGATTTCAAGAAGCAGGCTGCTCTGCTGCCGTTGCTGAGG
CGCCCGAGCCTAAAAGATCTGCTGCGACACACGCGAGAGGCCGTGGTTTG
CGAGATGGACCTCAGCCACCAAAGAGTTATGAGAGAAGGGGGAGCTGCTC
TGCTGCCGTTGCTGAGGCGCCCGAGCCTAAAAGATCTGCTGCGACACACG
CGAGAGGCCGTGGTTTGCGAGATGGACCTCAGCCACCAAAGAGTTATGAG
AGAAGGGGGA
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