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Homology
BLAST of mRNA_F-serratus_M_contig663.17630.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI) HSP 1 Score: 236 bits (602), Expect = 1.430e-68 Identity = 134/212 (63.21%), Postives = 151/212 (71.23%), Query Frame = 1
Query: 4 SEKASVPSAPTWDRTQRACEFEVEAFDASGTLSLSVFAEVGV---TDLTSDLELGRLDLQLGDLIDCSSFRARSEYQRWFPLC-----LGDVYSSAGHV------------GRWASATEKRRDTDFAHYNPIIQLSAKWIADRPGSSEE-----DRAASREPSRSYVSALLGEVSMSLIDNLRTKELLHLSVKGVDARYAESQDFTKGSCVV 564
S KA+V +APTWDR Q CEF+VEA +ASGTLSLSVFAEVGV TDL SD+E+GRLDLQLG LIDC SFRARSEYQRW+PL D AG G WA+A E+RR TDFAHYNPIIQL+A+W P SSE A+S+ SRSYVSALLGEVSMSL+DN R KELLHLSV+ VD RYAESQ+ T+GSCVV
Sbjct: 6762 STKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDSSGSGGGGSDGGTWATAMEQRRATDFAHYNPIIQLAARWS---PSSSESVSDGHGSASSQGRSRSYVSALLGEVSMSLVDNQRAKELLHLSVRDVDGRYAESQEVTRGSCVV 6970
BLAST of mRNA_F-serratus_M_contig663.17630.1 vs. uniprot
Match: A0A6H5KKT6_9PHAE (VPS13_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.040e-66 Identity = 130/200 (65.00%), Postives = 147/200 (73.50%), Query Frame = 1
Query: 4 SEKASVPSAPTWDRTQRACEFEVEAFDASGTLSLSVFAEVGV---TDLTSDLELGRLDLQLGDLIDCSSFRARSEYQRWFPLCLGDVYSSAG-----HVGRWASATEKRRDTDFAHYNPIIQLSAKWIADRPGSSEEDR-----AASREPSRSYVSALLGEVSMSLIDNLRTKELLHLSVKGVDARYAESQDFTKGSCVV 564
S KA+V +APTWDR Q CEF+VEA +ASGTLSLSVFAEVGV TDL +D+E+GRLDLQLG LIDC SFRARSEYQ G SS G WA+A E+RR TDF+HYNPIIQL+A+W P SSE D A+S+ SRSYVSALLGEVSMSL+DN R KELLHLSVK VD RYAESQ+ T+GSCVV
Sbjct: 31 STKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRADVEIGRLDLQLGGLIDCCSFRARSEYQARIVHSKGPEDSSGSGGGGSDGGTWATAMEQRRATDFSHYNPIIQLAARWS---PSSSESDSDGHGPASSQGRSRSYVSALLGEVSMSLVDNQRAKELLHLSVKDVDGRYAESQEVTRGSCVV 227
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 238.4 |
| Seed ortholog evalue | 2.7e-60 |
| Seed eggNOG ortholog | 2880.D7G8Y9 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization |
| EggNOG OGs | COG5043@1,KOG1809@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 568 |
| Cds size | 564 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932036.8626623-CDS-F-serratus_M_contig663:109493..109520 | 1622932036.8626623-CDS-F-serratus_M_contig663:109493..109520 | Fucus serratus male | CDS | F-serratus_M_contig663 109494..109520 - |
| 1690964114.3165197-CDS-F-serratus_M_contig663:109493..109520 | 1690964114.3165197-CDS-F-serratus_M_contig663:109493..109520 | Fucus serratus male | CDS | F-serratus_M_contig663 109494..109520 - |
| 1622932036.8901777-CDS-F-serratus_M_contig663:110265..110329 | 1622932036.8901777-CDS-F-serratus_M_contig663:110265..110329 | Fucus serratus male | CDS | F-serratus_M_contig663 110266..110329 - |
| 1690964114.3275893-CDS-F-serratus_M_contig663:110265..110329 | 1690964114.3275893-CDS-F-serratus_M_contig663:110265..110329 | Fucus serratus male | CDS | F-serratus_M_contig663 110266..110329 - |
| 1622932036.9075518-CDS-F-serratus_M_contig663:111792..111920 | 1622932036.9075518-CDS-F-serratus_M_contig663:111792..111920 | Fucus serratus male | CDS | F-serratus_M_contig663 111793..111920 - |
| 1690964114.3393095-CDS-F-serratus_M_contig663:111792..111920 | 1690964114.3393095-CDS-F-serratus_M_contig663:111792..111920 | Fucus serratus male | CDS | F-serratus_M_contig663 111793..111920 - |
| 1622932036.9471638-CDS-F-serratus_M_contig663:112653..112773 | 1622932036.9471638-CDS-F-serratus_M_contig663:112653..112773 | Fucus serratus male | CDS | F-serratus_M_contig663 112654..112773 - |
| 1690964114.3495913-CDS-F-serratus_M_contig663:112653..112773 | 1690964114.3495913-CDS-F-serratus_M_contig663:112653..112773 | Fucus serratus male | CDS | F-serratus_M_contig663 112654..112773 - |
| 1622932036.9663005-CDS-F-serratus_M_contig663:114584..114708 | 1622932036.9663005-CDS-F-serratus_M_contig663:114584..114708 | Fucus serratus male | CDS | F-serratus_M_contig663 114585..114708 - |
| 1690964114.3596072-CDS-F-serratus_M_contig663:114584..114708 | 1690964114.3596072-CDS-F-serratus_M_contig663:114584..114708 | Fucus serratus male | CDS | F-serratus_M_contig663 114585..114708 - |
| 1622932036.9861217-CDS-F-serratus_M_contig663:115343..115444 | 1622932036.9861217-CDS-F-serratus_M_contig663:115343..115444 | Fucus serratus male | CDS | F-serratus_M_contig663 115344..115444 - |
| 1690964114.3715334-CDS-F-serratus_M_contig663:115343..115444 | 1690964114.3715334-CDS-F-serratus_M_contig663:115343..115444 | Fucus serratus male | CDS | F-serratus_M_contig663 115344..115444 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig663.17630.1 >prot_F-serratus_M_contig663.17630.1 ID=prot_F-serratus_M_contig663.17630.1|Name=mRNA_F-serratus_M_contig663.17630.1|organism=Fucus serratus male|type=polypeptide|length=188bp
TSEKASVPSAPTWDRTQRACEFEVEAFDASGTLSLSVFAEVGVTDLTSDL ELGRLDLQLGDLIDCSSFRARSEYQRWFPLCLGDVYSSAGHVGRWASATE KRRDTDFAHYNPIIQLSAKWIADRPGSSEEDRAASREPSRSYVSALLGEV SMSLIDNLRTKELLHLSVKGVDARYAESQDFTKGSCVV back to topmRNA from alignment at F-serratus_M_contig663:109492..115444- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig663.17630.1 ID=mRNA_F-serratus_M_contig663.17630.1|Name=mRNA_F-serratus_M_contig663.17630.1|organism=Fucus serratus male|type=mRNA|length=5953bp|location=Sequence derived from alignment at F-serratus_M_contig663:109492..115444- (Fucus serratus male) ACCAGCGAAAAGGCCAGCGTACCAAGCGCGCCGACGTGGGATCGAACCCA
GCGAGCGTGCGAGTTCGAGGTTGAGGCATTCGATGCCTCCGGAACGCTGA
GGTGTGTCTGTGTATACTGTAGGGGGAGAAGCACCGCCAATAACTGATAT
TTTGGCAAGTAAAATTCATCCTGTACTCAACGTACACAACGAAGTACACA
CAGACATTATTGATGGTGAACGTTTGCGGCGATCTCTCCGCAGAGCAATT
AGTTTTTTTCTCCTTGTGGTTGTGTGTTTTCTTTCTCTTTTTGCTGTTGT
TTCATTTGCCGTTATCGTTTTTGTTGCATATTTTAATATTTTAATTCGGT
TTAGTTTGTTAGTAGAGATGGATGAGGGTGGTTATATGTTTTCGACATGG
CTGTCTTGGACGTCTTCTAGTCATTCAACGATTGGGGGGGGGGATACGAC
GATTCCATCCCCGGGTAGGTCACCATAACAACCCCTTCCGGGAATAGGAC
TACATGATCCCCTACATGGTCGGCAAGCTTGCCCCGAATTCAACTCATGT
CATCAGGGGGTTGGTCAAAGAAGTCCCCCGGAGAGGCTATTTTCGTGCCG
TCCTCTCCCAAAACGGGGACAAATTTGTGACATCCTCGCCCCCCAATCGT
TGAACTGGGACACCCTCTCCGCTGCTTACGCGACCCGTTCTCCCTTGTTA
TGCCTTACTATGTCATACCATGTCTTTGTTTCGCAGCCTTAGCGTGTTCG
CCGAGGTAGGCGTGACCGACTTGACGTCTGACTTGGAGCTAGGCCGCCTG
GACCTGCAGCTCGGGGACCTGATAGACTGCAGCTCTTTCCGCGCAAGGTC
GGAGTATCAGGTGTGCTTTCGTCGGTAGGGATCACGAAAAGGCTAGAGGA
ACAGGTGAAATCAGTTGGTAATCTAGAGCCTGGTCCTGGCGATGGATGCT
ACCGACCGATTTCATCCCAGTATAACGCAGCGAGTTGTATATATTATACC
TATTAATAGTACAAGACAAATTATTTGGAAAAGTGTGTTTACTGGAGCTA
AGAACGCAATTCGTTGGCCTCCGAAGCTGACCAACCTTTCGTATCCCTCT
CTCTCTGTTCACCTACTACGTAGTCTTCTGTTCCACGCTGTCCAGCGTGC
CTTTAGATTATTATTGCGAGCGTTTAGCGAGCTTCTAATCTGTGTGCTGT
ATCAATTTGAGCTCGGTTGTATCAAAATATGTTCCTTTTCGTAATGTTAC
CCCGTGCGTCATTTGTGCATGACGTACGTATACAAAAGGACTATACGTAG
TACGTAGATGGCGAATGTACTTACTTCCACCTGTGAGAGTAGTTTTGTTG
CAAGCGTTTAGCGAGCTTCTAATCTGTGTGCTGTATCAATTTGAGCTCGG
GTGTATCAAAATACGGGGCACTTTGACCAATCATGAAATGTGCCGTATGT
TCCTTTTCGTAATGTTACTCCGTCAAAAGGTTTCGATACGTTCAGATTTT
TTTATTCAGGGCTTTTGTACAGTCTTGAGGACAACTCCAGTTCAACAAGC
CAAACACCAACGACACATTGCACCAACACCAGTGTTAAGCTGACGATAGT
TACCAAACTATCCTTTAGCGAGCGTATAGCGATAGCTACCCTATCTTTAA
TAGTAGTATTAGCAGTTGTGTGGAACGCTCAAGTTGTGTAGAGTCTGCAG
AACATGGCACCATGTTTTTGTAATATAACTGAGCTTGTAGCATACCAAGT
AGATCTCGTAGTTTGTATGGAATAGAGCAGAACCCTATAAGTTATAACGT
CGTCTGTAGAACTAAATGTATGCCCATAGCTACAAAGAAACTCAATCGTC
CTCCAAGTAATAATCTAGCTAATTATATTATTAGTAGTACATACTACTAT
GTATTAGTATATATTACTAGTACCGGTATACAGTAGTGCCGATACATTTA
CAGTATCAATAGGATATTTAGGAACATATTACAAGTAGCATATTTATTTA
CCCTGTAACGACGAAATATATACTATGCCGTGAACGGGCGGCAAAAAAAG
AGATGGAAAGACATACATATATAGATATATAGATATATAGATATATATCG
ACTAAACATTTTATGTATGTATGTATTGTCATCACATACAGCAGAGTACC
GGTTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATA
TTCCACTGTCCCCGTGCGCGCCTGAGAAGTTGGTCTCGCGAGACGGGTTC
AGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACCCAGGCTGAATC
TGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTA
TGAAACCGTCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACACA
CTTGCGTACCGATGGCGTTCACTGCCGAGAATTCGCCGGCACAGGGCCAG
TAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTTACCATGG
ACTAATTGTGTATGCAGTACCCAAAGGCTATGAAAAACAAGCGTACCAAG
TGTATACAGTACCTGCAAGTTACCCTACTAGATAAAACAAACCCATTCGA
ACAAAAGTTAAGACGACTTAGCAAAACAACCGTTCCCTTCACCCCCCCCC
CTAACGCCCCTTCTTCTCCAGCGCTGGTTCCCGCTATGCTTGGGTGATGT
CTACAGCAGCGCCGGACACGTGGGCCGATGGGCCTCCGCCACAGAGAAGC
GGAGGGACACGGACTTCGCCCACTACAATCCTATCATTCAGGTGCGGGTC
GGGGAGGGGCTCGTTTGAGGGAGGGAAAAGGAACGTTGCCGCCTCGAAAT
TTGGAACATGGGGCAGATGTTTTTTGCGCTGCCCGCTCCTTGTCTTGCGC
CGGCAAAATATCGCTTTCTTACATAGATGTTTTTGGATACGATCGATCAT
TTTCTCTGTGGCTTTATTTCTAATTTTTGTGGGAGACCTTTTTGAGTCTT
GACATATACGCCAAAAGATACAGTGGATCACGTGTGGAACTATTACCATC
ATTTTGACTTTCCCGTTTACACTAAAATCAATATATTTGAACGCCCCTTA
TATAGGGGGTATCCAGATCTTGTTCGCGAGGTTTTCGGTTAAGCACATAA
TTGTGTGCAGAAAAGAAGATGGCGATCGGGTTGAACCCTATCAGAGCTAT
AGCGGCAGGGGAAGCTCAAGTTTTCTAGAGCAAACTCATTACGTCCTCCA
TCTTCATCTGAATCTGGCTTGGAGATATACCCTATACATATAGCCATCGA
TGTACAATACTTGGGAGTGTAAAACGTCTCCTAACAACAACAGTTGCCAT
GTTCCCACTACTAATAACAATGATTGTTTCAATATGGGCTTTTGGGGGGG
GGGTTATTCCTCTTTATTCATTTACTTCTTTTTTTTTCCGTACGTTTTTT
TTTCTAAACCCCCCCCAAACAAAACGTTTTTTTTGCTATTTTTTCCTTCT
TTCCTCCTTGTTGTCGCGACTTAGCTTTCCGCCAAGTGGATCGCCGATCG
GCCAGGCTCCTCGGAAGAAGACCGGGCGGCGTCGCGAGAGCCCAGCCGGT
CCTACGTCAGCGCGCTTCTTGGAGAGGTGTCCATGTCGCTTATCGACAAC
CTGTGAGTAAACAAAACGACCCTGAACCTGGTCTAGCAGTACCATAGAGT
GTTATAATATTTATAGTTGTAGCCCTTCAGGATCTCATTCCTATTGATTG
AAGAAAATACAGAACGCACCTAGACCTTCTGAGCATCCCCCAGCTTTTCT
ATGTTGTCCACGAAATGATCGGCTTCGTCGTCGATCTTCTGCGCACGAAT
GGAAATCTCGCTTTCAACACTGGGTTTCGTTCGTACTGCTGCCTTGTTTT
ATTCGTGTTTTGGTTTCGTTTTTATTGTAGTGACGAGCCCATGTTATGCA
CTGCTTTTCAACAACGTGGCTCGAAGCCGTTGGGCTGACGTTTGTTGTGT
TGGAACCCGCTATGTTGAATCGCTATAATATAATAGGTCTAATACTATTA
AAGAGCCTATTGTAATATTACGGTAATGTTATTGTAATTTATTATCGTTG
AAGAATGGTTGTAATGTTTGTAGTGCACTGCTTTTCAACAACGTGGCTCG
AAGCCGTTGGGCTGACGTTTGTTGTGTTCGAACCCGCTTTGTTGAATCGC
TATAATACAATACCAATTTCAACATGCCCACTTCATACCAATAGTGGGTG
TTGGAAAGAGAGGCGTATACCAATTGGTCCATGGTGACCTGCTAAGGCAG
CTCTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTC
TCGGCAGTGCACGCCATCGGTACGCAATTGCGTGACCCGATAAACTCAGA
ACTGACCCGATGGCGTATGGCGGTTTAATATAAATATATGGACGCCGCCG
GTGAATTCGGGAGGAATCCCGTAAGTAAGCACCATATTCAACCTGAATGT
GGAGCTGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAA
ACCAAATTTTCAGGCACGGACGCGGACAGGGGGATATTCATCTCCCGTGT
TCAGCTGACCACGAGCAGGATTGGCAACCTTAGCCGGTCGATCCATACTC
ATGCTATATGTGTGACCATATAATAGGTCTGATACTGTTATAGAACCCAT
TGCAATATTATGATAATATTATTGTAATCTAATATAGAGCCTATTGTAAT
ATTACGGTAATATTATTGTAATCTATTATAGAGCCCATTGTAATATTATT
GTAGTCTATTATAGAGCCCATTGTAATATTACGGCAATACTAATGTAATT
TATTCTCGTTGGCGAAGAATGATTGTAATGTATGTAATAGACGTTCGGAT
TGGAACGAGCAATCTCTCCCTCACGAAACTTGCTCATTACTCTGGAGATT
TGGTAGATAGGTGCAGACAAAACGGCCTCAACGAGAAAACTCTCGGGGAA
ATTCCCCACAAAAAGTGAAGGCTGAATAAAAGGTATATATTCAGTCTTTC
ACTACCGCGTTTTTGTTTTATGTCGTGGGCATCATCCGTTTCTTCACGCG
CAAAAAACGCCTCAGACGCACGAAGGAGCTCCTTCATCTATCCGTCAAGG
GAGTGGACGCCCGTTACGCGGAATCACAGGTACGAACGAGCAACACGCCC
GCCATGTGCAGGTGTCGAAAAGTGACCGTTTTTCACCACATTCAACCAAC
GTTAGGGCAGGTAGTTGTCGAATTTATAACGCGAGCGTAGTTTTATTTGT
TTTTATATTTTCATCTCTCGGTCGCTGTTTTAGCAAGTATCGACTACTGT
TGAAGATAAAAGGCCTAACCGTTTCATCTTGTATTTTGTACAAATAGGTT
GGGATCGTGTTAGTGACGTGTTGTGGATCGAGAAGATACCAAATTCCTCC
GAAAACCATCATAGTAACAGCCCACTTTGGCAACCTCAGTCTAAGTATCG
GGTCTTCTCCCTTTTAAAGAAGGGGTGGAAGTATACTTTACGCGATATTC
CCAGCGTCGTTTGTTTGGAATATTTTAAAGCCTGGAAAAAGCAAGCCGCC
CGATTGCCATATCGGCAACAATATGCCATTTTTGTCTTTTGCTTTTTTAC
AGTTTCTATTTTTATTTTTATCGATTATTAGAGCGTATCATACTGTCCAC
CATTCCGCATTTTGTACCAATTTCATAAGAAAATGTTATGCCTTTTTTTA
CTCTTTTTAACCATCTCTTGTAAGTCCTTTTTTTTCAAACCTTCTATATA
CGTATTAATATGTCATTCTGTGCTTTTTTTGCCCTCTCTTATGTTATATA
CGTATCAATATGTCAGTATGTCCTTTTTTTTCACCCTCTTTTCGGTTATA
TACGTATTAATATATAATTTGAAGGATTTCACGAAAGGAAGCTGCGTCGT
CGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig663:109492..115444- >mRNA_F-serratus_M_contig663.17630.1 ID=mRNA_F-serratus_M_contig663.17630.1|Name=mRNA_F-serratus_M_contig663.17630.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig663:109492..115444- (Fucus serratus male) ACCAGCGAAAAGGCCAGCGTACCAAGCGCGCCGACGTGGGATCGAACCCA GCGAGCGTGCGAGTTCGAGGTTGAGGCATTCGATGCCTCCGGAACGCTGA GACCAGCGAAAAGGCCAGCGTACCAAGCGCGCCGACGTGGGATCGAACCC AGCGAGCGTGCGAGTTCGAGGTTGAGGCATTCGATGCCTCCGGAACGCTG AGCCTTAGCGTGTTCGCCGAGGTAGGCGTGACCGACTTGACGTCTGACTT GGAGCTAGGCCGCCTGGACCTGCAGCTCGGGGACCTGATAGACTGCAGCT CTTTCCGCGCAAGGTCGGAGTATCAGCCTTAGCGTGTTCGCCGAGGTAGG CGTGACCGACTTGACGTCTGACTTGGAGCTAGGCCGCCTGGACCTGCAGC TCGGGGACCTGATAGACTGCAGCTCTTTCCGCGCAAGGTCGGAGTATCAG CGCTGGTTCCCGCTATGCTTGGGTGATGTCTACAGCAGCGCCGGACACGT GGGCCGATGGGCCTCCGCCACAGAGAAGCGGAGGGACACGGACTTCGCCC ACTACAATCCTATCATTCAGCGCTGGTTCCCGCTATGCTTGGGTGATGTC TACAGCAGCGCCGGACACGTGGGCCGATGGGCCTCCGCCACAGAGAAGCG GAGGGACACGGACTTCGCCCACTACAATCCTATCATTCAGCTTTCCGCCA AGTGGATCGCCGATCGGCCAGGCTCCTCGGAAGAAGACCGGGCGGCGTCG CGAGAGCCCAGCCGGTCCTACGTCAGCGCGCTTCTTGGAGAGGTGTCCAT GTCGCTTATCGACAACCTCTTTCCGCCAAGTGGATCGCCGATCGGCCAGG CTCCTCGGAAGAAGACCGGGCGGCGTCGCGAGAGCCCAGCCGGTCCTACG TCAGCGCGCTTCTTGGAGAGGTGTCCATGTCGCTTATCGACAACCTACGC ACGAAGGAGCTCCTTCATCTATCCGTCAAGGGAGTGGACGCCCGTTACGC GGAATCACAGACGCACGAAGGAGCTCCTTCATCTATCCGTCAAGGGAGTG GACGCCCGTTACGCGGAATCACAGGATTTCACGAAAGGAAGCTGCGTCGT CGATTTCACGAAAGGAAGCTGCGTCGTC back to top
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