mRNA_F-serratus_M_contig663.17627.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig663.17627.1
Unique NamemRNA_F-serratus_M_contig663.17627.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.440e-32
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            +RKP VV  I ER+ L+K+QAEAAL AFT+ V+  V+DG KI+LQGFGTFE R R GR GRNPRTGE ++IKATT PAFSASK FK+ V
Sbjct:   67 LRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 155
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.110e-28
Identity = 51/89 (57.30%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            ++K   VA I  ++GL+K+Q +AA+ AF +TV++ V+DGKK++L GFGTFESRERA RQGRNP+TGE + I A+  PAFSA+K FK++V
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 89
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A6L5GQ70_9FIRM (HU family DNA-binding protein n=3 Tax=Eubacteriaceae TaxID=186806 RepID=A0A6L5GQ70_9FIRM)

HSP 1 Score: 101 bits (251), Expect = 3.720e-26
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKE 264
            + K Q+VA I E++GL+K ++E AL AFTE++V+ +  G K++L GFGTF+ R RA RQG NPRT EPIEIKA+  PAF A K FK+
Sbjct:    1 MNKTQLVASISEKSGLSKKESEKALSAFTESIVEALQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASNAPAFKAGKAFKD 87
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: K9U4A1_CHRTP (Bacterial nucleoid protein Hbs n=3 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U4A1_CHRTP)

HSP 1 Score: 101 bits (251), Expect = 4.170e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K ++V  I E+A + K QA+A L A  ET++D VS G K+ L GFG+FESRER  R+GRNP+TG+ +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDSIAEKASVTKKQADAVLTAALETIIDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATKVPAFSAGKLFKEKV 89
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: F4Y0D3_9CYAN (Bacterial nucleoid protein Hbs n=29 Tax=Moorena TaxID=1155738 RepID=F4Y0D3_9CYAN)

HSP 1 Score: 100 bits (250), Expect = 5.920e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K ++V ++ E+A + K QA+A L A  ET+++ VS+G K+ L GFG+FESRER  R+GRNP+TGE +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREGRNPKTGEKMEIPATKVPAFSAGKVFKERV 89
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A7C3PJK0_9CYAN (HU family DNA-binding protein n=2 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PJK0_9CYAN)

HSP 1 Score: 100 bits (249), Expect = 7.720e-26
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K ++V  I  +AG+ K  A+A L A TET+++ V+DG+K+ L GFGTFE R+R  R+GRNP TG+PI I ATTVP FSA K FKE+V
Sbjct:    1 MNKQELVDAIAVKAGVTKKDADAILSALTETIMEAVADGEKVTLVGFGTFEPRDRQAREGRNPSTGKPITIPATTVPGFSAGKLFKEKV 89
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A8J7B6Z1_9CYAN (HU family DNA-binding protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7B6Z1_9CYAN)

HSP 1 Score: 100 bits (249), Expect = 8.400e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K  +V ++ ++A + K QA+A L A  ETV++ VS G+K+ L GFG+FESR+R  R+GRNP+TGE +EIKAT VPAFSA K FKE+V
Sbjct:    1 MNKGDLVDKVAQKAAVTKKQADAVLTATLETVMEAVSKGEKVTLVGFGSFESRDRKAREGRNPKTGEKMEIKATCVPAFSAGKLFKEKV 89
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BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A098TFT8_9CYAN (DNA-binding protein n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A098TFT8_9CYAN)

HSP 1 Score: 100 bits (248), Expect = 1.160e-25
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K ++V ++ E+A + K QA+A L A  E +VD VS G K+ L GFG+FESRER  R+GRNP+TGE +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDKVAEKAHVTKKQADAVLTAALEAIVDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGEKMEIPATKVPAFSAGKLFKEKV 89
[Close]
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: U5DQY8_9CHRO (Bacterial nucleoid DNA-binding protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DQY8_9CHRO)

HSP 1 Score: 99.4 bits (246), Expect = 2.210e-25
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K  ++ +I E+  + K QA+A L A  +T+++ VSDG+K+ L GFG+FESRER  R+GRNP+TG+ +EI AT VPAFSA K+FKE+V
Sbjct:    1 MNKGDLIDQIAEKTTVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKSFKEKV 89
[Close]
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: UPI001684A996 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001684A996)

HSP 1 Score: 99.4 bits (246), Expect = 2.210e-25
Identity = 46/89 (51.69%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    4 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 270
            + K +++ ++ E+A + K +A+A + AFTE+VV+ V++G+K+ L GFGTFE R RA R+GRNP+TGE ++I A+TVP FSA K FKE+V
Sbjct:    1 MNKAELIDKVAEKANVTKKEADALISAFTESVVEAVAEGQKVTLVGFGTFEPRARAEREGRNPKTGEAMKIPASTVPVFSAGKLFKEKV 89
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST5_ECTSI1.440e-3267.42DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z9S8_9STRA2.110e-2857.30DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
A0A6L5GQ70_9FIRM3.720e-2656.32HU family DNA-binding protein n=3 Tax=Eubacteriace... [more]
K9U4A1_CHRTP4.170e-2656.18Bacterial nucleoid protein Hbs n=3 Tax=Chroococcid... [more]
F4Y0D3_9CYAN5.920e-2655.06Bacterial nucleoid protein Hbs n=29 Tax=Moorena Ta... [more]
A0A7C3PJK0_9CYAN7.720e-2655.06HU family DNA-binding protein n=2 Tax=Oscillatoria... [more]
A0A8J7B6Z1_9CYAN8.400e-2655.06HU family DNA-binding protein n=1 Tax=Lusitaniella... [more]
A0A098TFT8_9CYAN1.160e-2556.18DNA-binding protein n=2 Tax=Leptolyngbyaceae TaxID... [more]
U5DQY8_9CHRO2.210e-2552.81Bacterial nucleoid DNA-binding protein n=1 Tax=Rub... [more]
UPI001684A9962.210e-2551.69HU family DNA-binding protein n=1 Tax=Pseudanabaen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig663contigF-serratus_M_contig663:58339..58935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.0
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog118168.MC7420_1302
Preferred namehup
KEGG koko:K03530
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006355,GO:0006725,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010106,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019725,GO:0030003,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0040007,GO:0042262,GO:0042592,GO:0042594,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090143,GO:0090304,GO:0097100,GO:0097159,GO:0098771,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
EggNOG OGs1G6UT@1117,1HBG8@1150,COG0776@1,COG0776@2
COG Functional cat.L
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032,ko03036,ko03400
Exons2
Model size273
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932036.2163005-CDS-F-serratus_M_contig663:58338..584961622932036.2163005-CDS-F-serratus_M_contig663:58338..58496Fucus serratus maleCDSF-serratus_M_contig663 58339..58496 -
1690964113.9660988-CDS-F-serratus_M_contig663:58338..584961690964113.9660988-CDS-F-serratus_M_contig663:58338..58496Fucus serratus maleCDSF-serratus_M_contig663 58339..58496 -
1622932036.2336059-CDS-F-serratus_M_contig663:58820..589351622932036.2336059-CDS-F-serratus_M_contig663:58820..58935Fucus serratus maleCDSF-serratus_M_contig663 58821..58935 -
1690964113.9800909-CDS-F-serratus_M_contig663:58820..589351690964113.9800909-CDS-F-serratus_M_contig663:58820..58935Fucus serratus maleCDSF-serratus_M_contig663 58821..58935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig663.17627.1prot_F-serratus_M_contig663.17627.1Fucus serratus malepolypeptideF-serratus_M_contig663 58339..58935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig663.17627.1

>prot_F-serratus_M_contig663.17627.1 ID=prot_F-serratus_M_contig663.17627.1|Name=mRNA_F-serratus_M_contig663.17627.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MVRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGT
FESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV*
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mRNA from alignment at F-serratus_M_contig663:58339..58935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig663.17627.1 ID=mRNA_F-serratus_M_contig663.17627.1|Name=mRNA_F-serratus_M_contig663.17627.1|organism=Fucus serratus male|type=mRNA|length=597bp|location=Sequence derived from alignment at F-serratus_M_contig663:58339..58935- (Fucus serratus male)
ATGGTGAGGAAGCCGCAGGTGGTGGCGGAGATCATGGAGAGGGCCGGCCT
GAACAAGTCGCAGGCAGAAGCAGCATTGGTGGCGTTTACGGAAACCGTCG
TCGATTGGGTGTCTGGTAAGTTCACCCCCCCCCCCCCCCCCCGGCTAGCC
GAAAAACATACTGAAGGCTACCATTAGAAAAAGCCGGACGAGAAAGAAAT
GCCTCCACCTTGCACAGGCGCTGCAGCCTTAAGCACAACTGTCAACCGAC
GCAGCTGTAAGACACAAAGAAAGAATAATACTGAACAAGTAGGGAGAAGA
AGAGGCGCACCAGGAGACCGAGTTAGTTCATGACCCTCGTTGCGTGGTTG
TGTCGACGATGTACCAAGGTGGCCATAGGTGTTTCTGTTACGATTTTATG
TTGTTGTTTTCATATATTTTTTCTCGGTCGTTGGTGCAGACGGGAAGAAG
ATCAATCTGCAGGGGTTCGGCACGTTCGAGTCTCGCGAACGGGCGGGGCG
GCAGGGCCGCAATCCACGGACCGGAGAGCCGATCGAAATCAAGGCGACGA
CCGTGCCGGCGTTTTCAGCATCAAAAACGTTTAAAGAACAGGTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig663:58339..58935-

>mRNA_F-serratus_M_contig663.17627.1 ID=mRNA_F-serratus_M_contig663.17627.1|Name=mRNA_F-serratus_M_contig663.17627.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig663:58339..58935- (Fucus serratus male)
ATGGTGAGGAAGCCGCAGGTGGTGGCGGAGATCATGGAGAGGGCCGGCCT
GAACAAGTCGCAGGCAGAAGCAGCATTGGTGGCGTTTACGGAAACCGTCG
TCGATTGGGTGTCTGATGGTGAGGAAGCCGCAGGTGGTGGCGGAGATCAT
GGAGAGGGCCGGCCTGAACAAGTCGCAGGCAGAAGCAGCATTGGTGGCGT
TTACGGAAACCGTCGTCGATTGGGTGTCTGACGGGAAGAAGATCAATCTG
CAGGGGTTCGGCACGTTCGAGTCTCGCGAACGGGCGGGGCGGCAGGGCCG
CAATCCACGGACCGGAGAGCCGATCGAAATCAAGGCGACGACCGTGCCGG
CGTTTTCAGCATCAAAAACGTTTAAAGAACAGGTATGAACGGGAAGAAGA
TCAATCTGCAGGGGTTCGGCACGTTCGAGTCTCGCGAACGGGCGGGGCGG
CAGGGCCGCAATCCACGGACCGGAGAGCCGATCGAAATCAAGGCGACGAC
CGTGCCGGCGTTTTCAGCATCAAAAACGTTTAAAGAACAGGTATGA
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