mRNA_F-serratus_M_contig6625.17624.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6625.17624.1
Unique NamemRNA_F-serratus_M_contig6625.17624.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6625.17624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6625contigF-serratus_M_contig6625:8940..13427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size367
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6625.17624.1prot_F-serratus_M_contig6625.17624.1Fucus serratus malepolypeptideF-serratus_M_contig6625 8940..13427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932035.744137-CDS-F-serratus_M_contig6625:8939..89971622932035.744137-CDS-F-serratus_M_contig6625:8939..8997Fucus serratus maleCDSF-serratus_M_contig6625 8940..8997 +
1690964113.7706335-CDS-F-serratus_M_contig6625:8939..89971690964113.7706335-CDS-F-serratus_M_contig6625:8939..8997Fucus serratus maleCDSF-serratus_M_contig6625 8940..8997 +
1622932035.7585373-CDS-F-serratus_M_contig6625:9082..93471622932035.7585373-CDS-F-serratus_M_contig6625:9082..9347Fucus serratus maleCDSF-serratus_M_contig6625 9083..9347 +
1690964113.7950084-CDS-F-serratus_M_contig6625:9082..93471690964113.7950084-CDS-F-serratus_M_contig6625:9082..9347Fucus serratus maleCDSF-serratus_M_contig6625 9083..9347 +
1622932035.7713373-CDS-F-serratus_M_contig6625:13384..134271622932035.7713373-CDS-F-serratus_M_contig6625:13384..13427Fucus serratus maleCDSF-serratus_M_contig6625 13385..13427 +
1690964113.808397-CDS-F-serratus_M_contig6625:13384..134271690964113.808397-CDS-F-serratus_M_contig6625:13384..13427Fucus serratus maleCDSF-serratus_M_contig6625 13385..13427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6625.17624.1

>prot_F-serratus_M_contig6625.17624.1 ID=prot_F-serratus_M_contig6625.17624.1|Name=mRNA_F-serratus_M_contig6625.17624.1|organism=Fucus serratus male|type=polypeptide|length=122bp
NRSRASISRNAACINRNAATAPSAVSGTADLISAGDDGPPGCACDDVRAA
DDALLAASEERRDGRGAPGVAPTPDPAPAPAAFSEGKCDLSKSTEYNFRA
DHRRFTDRFRHARRLLDYSYHS
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mRNA from alignment at F-serratus_M_contig6625:8940..13427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6625.17624.1 ID=mRNA_F-serratus_M_contig6625.17624.1|Name=mRNA_F-serratus_M_contig6625.17624.1|organism=Fucus serratus male|type=mRNA|length=4488bp|location=Sequence derived from alignment at F-serratus_M_contig6625:8940..13427+ (Fucus serratus male)
AACCGTAGCAGAGCCAGCATCAGCCGTAACGCCGCCTGCATCAACCGTAA
CGCCGCCAGCATCAGCCGTAGCACCGCCAGCATCAGCCGTAACGCCGCCA
GGACCAGTCGTTGCACCGCCAGCATCAGCCGTAACGCCGCCAGCAGCACC
ATCAGCCGTGTCAGGAACGGCGGACTTGATCTCGGCTGGGGATGATGGCC
CCCCGGGCTGCGCCTGTGACGATGTCCGCGCGGCGGATGACGCCCTTCTC
GCTGCCAGTGAAGAGAGGAGGGACGGCCGTGGCGCTCCCGGCGTGGCTCC
GACTCCGGATCCGGCTCCGGCTCCGGCGGCTTTCTCGGAGGGCAAGTGCG
ACTTGAGCAAGAGCACGGAGTACAACTTCAGGGCAGACCATCGGAGGTTT
ACCGACAGGTTCGTCGTACATTTGTTTTTTTCTTCCTTTTTCAATCTTGT
CTTGTCTTGTTTTGTGTGTGTGTTTATAGGTTCGCACATTTGAGCCGATA
CTTTCAACATGGCTACTTCAGTGACGTCCAGAATAACTGGGATGACAATA
CACACGCACACACGTTGGTCCTGTAGCTGCCAACCCAGATAATCTAGATA
ATAACAAGGAAACAGAGGGGGGAGCACACGGTACTCGTGGCTCAAGTAAG
AAGTGTACAAGTAGAAAGATTGTGTCCCCTTTGTCGCGTCTGATCAGAGA
TTTTCGTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAATGCTAGTG
GCATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGTCATGTGCAATT
TAATAAATACACATACGTACATACATACATACATACATACATACATACAT
ACATACATACATACATACATACATAAATACTCGAACTGGTCCTCCCAGTG
GGGTTACAGTTATACAGTGGTCTACTATGTACCCCAACTTTTCTTCATAG
AACGCTCAATTCAACACTTGAATAAATATTCGCAGAAGTCCATCTATGAT
CGACTTTGATTGGCCTTTTATCCCTAACAAACCCAAGTGATACCAGTATT
TGGCGACATACACGGTTTGGGCCCCCCAACAAGTGCTGGAAAAACTGCAA
TGCTAGGGTGTGTTCGATATGGTACCGGTATGGATGTACCGAAGTGTCCG
GTACGGGTAATGGTGTCGTACCGAACTTACCGTAAGTGTCTGGTGCCGGT
ATTGATGTCGTACCGAACTTACCGAAGTGTCCGGTACCGATATTGATGAT
GTACTAAATTTACCGGAGTGTCCCGTACCGGTAATACCGGTGGTGTATAC
CGGCGGTATGCCTCGGTACGTACCGTACCGAACACACGCTATAATATAAA
TTTTCCTTCCTCTCGGACCCCCCCCCCCATATACTTGTGCTGTGCAAGCG
GCCGAGGAATCGGTACAATCTTGATGCGATAAAATTCTAACGAGCGACAC
AAGGGACACAACCACACCCCCTAAACAATCACACACACAAACAAGAAATT
TTTCGAACAGAGTGCTCAAGACTTTCGCGAAATATCCAGAACACATTTAG
GTGCCGAAATAAATTTTCTTTTCATCATTTTCTCTTACGAAAAAAAAATG
CAAAAAAGGGTATATTTATATATAATATATAGTGTTACAGAGTAAAATCT
ACGTAGTATTAATAGTGAAACAAGCGGAAGTTCGATTTTTGGATCATTTT
TTTTTTATATACCTGTATCAATATATTTATTTATCTCTCCGAGGGGGAGG
ATTGTTCTTGTCCCGATTGTTATCATACTTCCTTCAGTCGACGAATCATA
ACCCGGGGTTCGAGCCTGAATATCCCCCCCCCCGCCCCAAAACTCTGCTC
TTACACTGAATGCCGCCATTCTTTTTAAGGCGGGGGTGGTGGGTTACAAG
CGCTGGGTGTGTTGAAAAATCGAGCTGGACGAGAACTCTTGAAAATGAAA
TAGGTCAACCGGCTGGTGTTCGCACACCATGCGATTGGGGAAAAAAAGTC
ACGCTACTTTTATGAGATACAGTATGTTTGTATTGTCACCACATATAGTA
GCAAGAGTAACGATCAACCGATTAAGGTTGCCAATCCTGCTCGTGGTCAC
CTGAACAGGGAAAATGATTTTTTCCCTTTCCCCGTTCGCCCCTGAGAATT
TGGCCTCGCGAGATGGGTTTGGCAGCCCCGTCCCGCGTCAGCCTGCTCAT
CTCCACACTCAGGCCGAATCTGGTGCTTACTTACGGCATTCCTCCCGAGT
TCCGCGGCGGCGTCCATATATTTATATTAAACCGCCATACGCCATCGAGT
AAGTCCCGAGTTTATCGGGTCACGCAGTTGCGTACCGATGGCGTTCACTG
CCGAGAGTCCGCCGGCACAGGGTCAGTAAACCCCAAGGTAGTTCCGAACG
AGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTCTTT
CCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTAACGGCGATC
TATACCTATATGTATATCATCGCCCGTGTGGAGTATGATGGAGTAGTGGA
TAATCTCGCTGTTTCACTAGTAGTGCGGAGGTCGTGAGTTCGATTCTTGA
CAGGATCAGTTTTTTTCATTATGGCTTCCGCAGCGAAAAAGTGTGAGAAC
GTGAGTAAGTAAACTTCAACCACTCGTTGCTATAATGCTATAATAGTTAG
TATAATACCAGGTACTATAATGCTATAATACTATAATGCTATAATAGTAT
ACTAGTCTAATAGTTGACGAGGCGTGAAGAGTGCTGAACTTGCATCGCGA
TAAACACCTTAAAGACCAGATACATCATTAGGATGGCAACGCTGCAGTAG
GTGGGATTGGTAAGCTATTTAAACGTTGCAGTAGGTGGGACTGGTAAGCT
ATTTAAACGTTGCAGTAGGTGGGACTGGTAACCTATTTAAACGTTGCTTT
CTCATAATATATACCCTTTTGGGGGGGAAGTTAGCCTGTGACCACGGAAG
GCGTTCGCTTCAGTTGGACCAGTACGGATGTTGGAAGGTACTGAGCAGAG
AGCGGAACGGTTTTTAATGTGAAGACAACAACAACAACAACAAGTAGGTG
GGATTGGCAAGCTATTTAACTATTAATAATAGTATTAATAATAGCACGTT
GAGGCCCATCGCCAATGTATATTCAACCATCACCCGAGCTTACAGTTGTT
AGTTGTAAACAAAAAATATACTTTGTTAAGATTTTCCCCACACAATCCCT
TAACCCCGCCCCCCCTTCCCCCACGAAAAAAAAATGCGTACCTCAAAAAT
AGAAGCAAGACACAAGAAAATACTCGTGGTGAATTTGACAGAAGAAAAAA
CGCCCAGCAAGATTTGAAGGGAAAATACTTTCAATAAAAAAAAAAAGACT
CGTTTCACGGTGCTACTGTGGAAAATACTTTGTTTGAAGATGGTGATGCA
GCAAATACATTCCGTGCTTTTACACCAACACAATCTGAAGAAACATAGTC
TATGGTAACAGCAAATCGTTTTTGGTCACATATTTTTGGTGTAGCTTTTT
CAAATAAACGTTGTTTACATTTCTCTATGTTATTTGTACCAGTAACGGGA
TTATGGACAAGTGCTGTTGGTATTGTAGGTCTTGCTCTTAATTTAAGAGC
TTACCGTATGACTTTGTATCACAAGAATCCTGACAAGAAAATACAACAAC
TCTCCCCCCCCTCCCCCTTCCCCCCGCTCCAACAATCTGAGACGGTTTTG
GCTTCGCTTCTTGTACTTGAAGTACAATGTTTTCAGAGTCTCCAACTGCG
GTAAGGCAATTTGTTCCTCTTGCTTATACTGTAGTTCATAGCAGGTATAT
TAAATACTATATACTCCGGAGTACAAAATAAAAAAAGACGTGGAAGGGCG
CAGCCGAACTGTGATCCCTCGTGGATATATATATATTATAGCAGATGGTC
TTAAACTTTTTGTTAAAGAAACTGTTTTGCCAACAAATGCAAATATTGTT
CTTTTCGTATTAGCACCCCTTATTACTTTCATTTTAAGCCTAATTAGTTG
GGCTGTTATTCCTTTTAGTTTTGGTAATGTGATTGCGGATCCTCAGCTTG
GGGTTTTGTACTTTTTGGCAGTATCTTCGTTGGGCGTTTATGGTGTACTA
ATATCCGGTTGGTCTAGTAATTCGAAGTACGCGTTTTTGGGCGCTTTACG
TTCAGCGGCTCAAATGGTTTCTTATGAGATATCAATGGGAATTGGGTTAA
TAAATGTATGTTTGTGCGTAGGTACACTAAATTTAACTGAGATAGTCATA
GCGCAATTAGATATTTGGCTAATTTTCCCCTTTTTCCGGTAAGCATAATG
TTTTTCATCGGGTGCCTAGCACCCGCAGTAGCCTTTATTTATTATTATTT
ATACTATGATACCGTTAATTACTCGTTAATATACTGTATTTTCAGGTTTC
GACACGCCCGCCGCCTGCTGGACTACAGCTACCACTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6625:8940..13427+

>mRNA_F-serratus_M_contig6625.17624.1 ID=mRNA_F-serratus_M_contig6625.17624.1|Name=mRNA_F-serratus_M_contig6625.17624.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig6625:8940..13427+ (Fucus serratus male)
AACCGTAGCAGAGCCAGCATCAGCCGTAACGCCGCCTGCATCAACCGTAA
CGCCGCCAAACCGTAGCAGAGCCAGCATCAGCCGTAACGCCGCCTGCATC
AACCGTAACGCCGCCACAGCACCATCAGCCGTGTCAGGAACGGCGGACTT
GATCTCGGCTGGGGATGATGGCCCCCCGGGCTGCGCCTGTGACGATGTCC
GCGCGGCGGATGACGCCCTTCTCGCTGCCAGTGAAGAGAGGAGGGACGGC
CGTGGCGCTCCCGGCGTGGCTCCGACTCCGGATCCGGCTCCGGCTCCGGC
GGCTTTCTCGGAGGGCAAGTGCGACTTGAGCAAGAGCACGGAGTACAACT
TCAGGGCAGACCATCGGAGGTTTACCGACAGCAGCACCATCAGCCGTGTC
AGGAACGGCGGACTTGATCTCGGCTGGGGATGATGGCCCCCCGGGCTGCG
CCTGTGACGATGTCCGCGCGGCGGATGACGCCCTTCTCGCTGCCAGTGAA
GAGAGGAGGGACGGCCGTGGCGCTCCCGGCGTGGCTCCGACTCCGGATCC
GGCTCCGGCTCCGGCGGCTTTCTCGGAGGGCAAGTGCGACTTGAGCAAGA
GCACGGAGTACAACTTCAGGGCAGACCATCGGAGGTTTACCGACAGGTTT
CGACACGCCCGCCGCCTGCTGGACTACAGCTACCACTCCGTTTCGACACG
CCCGCCGCCTGCTGGACTACAGCTACCACTCC
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