mRNA_F-serratus_M_contig661.17598.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig661.17598.1
Unique NamemRNA_F-serratus_M_contig661.17598.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig661.17598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig661contigF-serratus_M_contig661:148810..149485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.9439483-UTR-F-serratus_M_contig661:148809..1490951622932028.9439483-UTR-F-serratus_M_contig661:148809..149095Fucus serratus maleUTRF-serratus_M_contig661 148810..149095 +
1690964110.2642832-UTR-F-serratus_M_contig661:148809..1490951690964110.2642832-UTR-F-serratus_M_contig661:148809..149095Fucus serratus maleUTRF-serratus_M_contig661 148810..149095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.960117-CDS-F-serratus_M_contig661:149095..1494851622932028.960117-CDS-F-serratus_M_contig661:149095..149485Fucus serratus maleCDSF-serratus_M_contig661 149096..149485 +
1690964110.2759993-CDS-F-serratus_M_contig661:149095..1494851690964110.2759993-CDS-F-serratus_M_contig661:149095..149485Fucus serratus maleCDSF-serratus_M_contig661 149096..149485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig661.17598.1prot_F-serratus_M_contig661.17598.1Fucus serratus malepolypeptideF-serratus_M_contig661 149096..149485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig661.17598.1

>prot_F-serratus_M_contig661.17598.1 ID=prot_F-serratus_M_contig661.17598.1|Name=mRNA_F-serratus_M_contig661.17598.1|organism=Fucus serratus male|type=polypeptide|length=130bp
MGLPALVKRSSKEQGCSPNSGRSPREGIDSNDPPLSRFYLRMLSATATTS
NQPQHAFCSQADCEQTSEPCKAHHNTPSATYVEGEPTRSQTTAIRPMPEK
ILTFPFPPSTRAPSFIKERLIFVPFSPHPL
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mRNA from alignment at F-serratus_M_contig661:148810..149485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig661.17598.1 ID=mRNA_F-serratus_M_contig661.17598.1|Name=mRNA_F-serratus_M_contig661.17598.1|organism=Fucus serratus male|type=mRNA|length=676bp|location=Sequence derived from alignment at F-serratus_M_contig661:148810..149485+ (Fucus serratus male)
AAATTATCAGGCGCCAACGAGGACAGGGCAGATGAATTTCCCCTGTTTAG
GTGACCACAAGGATGACTTTTGCGACCATGCACGGTTGATGCCCAAACTG
CTGAAGATGATGAAACACAAACCCTCCCGACCACTGTCCTTCTGATGTAA
GACCTCACCTGGCATCAAACCAACTCCGGTAAAACACGAGGATTCACCTT
CCTAGGGTCTCTGAAATCAGTATCTATGAAGAGGTGGCTGGTTCTGCGTG
TCCTCTACACCACCCGTGGCTCCGAAAGTGTTTCTAATGGGTCTCCCGGC
CCTCGTGAAGAGGTCTAGTAAGGAGCAGGGCTGCTCGCCGAACAGTGGCA
GATCACCTCGGGAGGGAATTGACTCAAACGATCCGCCTTTGTCGAGATTT
TATTTGCGCATGCTCTCAGCTACAGCTACAACGAGCAACCAGCCCCAGCA
CGCCTTTTGCTCACAGGCAGATTGTGAACAAACGTCGGAGCCCTGCAAAG
CTCATCACAACACGCCGTCAGCAACATATGTTGAGGGCGAACCTACGCGT
TCTCAAACGACGGCAATTCGCCCAATGCCAGAGAAAATCCTTACTTTCCC
TTTTCCCCCCTCAACCCGCGCGCCCTCTTTTATCAAAGAACGCCTCATTT
TCGTCCCCTTTTCCCCCCACCCTTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig661:148810..149485+

>mRNA_F-serratus_M_contig661.17598.1 ID=mRNA_F-serratus_M_contig661.17598.1|Name=mRNA_F-serratus_M_contig661.17598.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig661:148810..149485+ (Fucus serratus male)
ATGGGTCTCCCGGCCCTCGTGAAGAGGTCTAGTAAGGAGCAGGGCTGCTC
GCCGAACAGTGGCAGATCACCTCGGGAGGGAATTGACTCAAACGATCCGC
CTTTGTCGAGATTTTATTTGCGCATGCTCTCAGCTACAGCTACAACGAGC
AACCAGCCCCAGCACGCCTTTTGCTCACAGGCAGATTGTGAACAAACGTC
GGAGCCCTGCAAAGCTCATCACAACACGCCGTCAGCAACATATGTTGAGG
GCGAACCTACGCGTTCTCAAACGACGGCAATTCGCCCAATGCCAGAGAAA
ATCCTTACTTTCCCTTTTCCCCCCTCAACCCGCGCGCCCTCTTTTATCAA
AGAACGCCTCATTTTCGTCCCCTTTTCCCCCCACCCTTTAATGGGTCTCC
CGGCCCTCGTGAAGAGGTCTAGTAAGGAGCAGGGCTGCTCGCCGAACAGT
GGCAGATCACCTCGGGAGGGAATTGACTCAAACGATCCGCCTTTGTCGAG
ATTTTATTTGCGCATGCTCTCAGCTACAGCTACAACGAGCAACCAGCCCC
AGCACGCCTTTTGCTCACAGGCAGATTGTGAACAAACGTCGGAGCCCTGC
AAAGCTCATCACAACACGCCGTCAGCAACATATGTTGAGGGCGAACCTAC
GCGTTCTCAAACGACGGCAATTCGCCCAATGCCAGAGAAAATCCTTACTT
TCCCTTTTCCCCCCTCAACCCGCGCGCCCTCTTTTATCAAAGAACGCCTC
ATTTTCGTCCCCTTTTCCCCCCACCCTTTA
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