mRNA_F-serratus_M_contig661.17597.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig661.17597.1
Unique NamemRNA_F-serratus_M_contig661.17597.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig661.17597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig661contigF-serratus_M_contig661:138207..143998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size278
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig661.17597.1prot_F-serratus_M_contig661.17597.1Fucus serratus malepolypeptideF-serratus_M_contig661 138207..143864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.6195445-CDS-F-serratus_M_contig661:138206..1382901622932028.6195445-CDS-F-serratus_M_contig661:138206..138290Fucus serratus maleCDSF-serratus_M_contig661 138207..138290 -
1690964110.1295373-CDS-F-serratus_M_contig661:138206..1382901690964110.1295373-CDS-F-serratus_M_contig661:138206..138290Fucus serratus maleCDSF-serratus_M_contig661 138207..138290 -
1622932028.6317031-CDS-F-serratus_M_contig661:143804..1438641622932028.6317031-CDS-F-serratus_M_contig661:143804..143864Fucus serratus maleCDSF-serratus_M_contig661 143805..143864 -
1690964110.1387553-CDS-F-serratus_M_contig661:143804..1438641690964110.1387553-CDS-F-serratus_M_contig661:143804..143864Fucus serratus maleCDSF-serratus_M_contig661 143805..143864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.6464262-UTR-F-serratus_M_contig661:143864..1439981622932028.6464262-UTR-F-serratus_M_contig661:143864..143998Fucus serratus maleUTRF-serratus_M_contig661 143865..143998 -
1690964110.147411-UTR-F-serratus_M_contig661:143864..1439981690964110.147411-UTR-F-serratus_M_contig661:143864..143998Fucus serratus maleUTRF-serratus_M_contig661 143865..143998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig661.17597.1

>prot_F-serratus_M_contig661.17597.1 ID=prot_F-serratus_M_contig661.17597.1|Name=mRNA_F-serratus_M_contig661.17597.1|organism=Fucus serratus male|type=polypeptide|length=48bp
MCRTKGCSESLGAFYIFFKQTGSGTCEYSTVPFARSGVCTSAPYRGGN
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mRNA from alignment at F-serratus_M_contig661:138207..143998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig661.17597.1 ID=mRNA_F-serratus_M_contig661.17597.1|Name=mRNA_F-serratus_M_contig661.17597.1|organism=Fucus serratus male|type=mRNA|length=5792bp|location=Sequence derived from alignment at F-serratus_M_contig661:138207..143998- (Fucus serratus male)
TCTGCCATACCTCTATTCGACACGCACTGCTCCGGGCCTTCGAGAGATCG
AACGTATATGATCTAAGCCATTTTTCGGGATCGATCTTCTGCCGCTAGCG
GTCGTCTGAATTGCCTGGATATCTGTACCAGGCGATGTGCAGAACAAAAG
GATGCTCAGAAAGTCTAGGTGCGTTCTATATTTTCTTCAAACAAGTGAGT
ACTTTACCTGGCCGCCCTCTGGTTGTTCCTCTGATATCTGTTCTGCACCT
GTAGACGAGGCGTACAAGACAGATACCGCAGATGTAGCTTTGGGTGATGC
CTTCTATGGACTAGTTGCATTACTGCTAAATTAAGCCCGGCCGAGCCGCA
CCTGAGCGGTGAGTCACAACAGTACTTTGTAGTGCAAGGGCTGACTGCCG
CCCACACCGCGTAGCATCGCATGGCGATGTCTAGCTCATGATTTGGTCTC
TCGATTCGAAGAAGGAATAGTTGCAGCCTTCTAGAACAAATACTACTGGA
TCCCACCTAAGCGTTTTGACATTTTTCCCCCTGTGTGGGATGCTCAGAAG
GTCTAGATGCTTTCAGATTAAAAAAAAAAAGGAGGATGAGGTATGAATAC
GAACAACACGTTCGGCGGGATGCTGGCTGTGCATCGAGCGTGTTTCGTTG
AGACGTCGTGGCATACGGGTACCCTCTAGGCCCTGTCTCACTCAACGTCC
AAATAGAGAATCTGTCAAAAATAAAGCTCTGTGATTGGCCAAATGAGCTC
GACACTACTAATCGGCAAGTTCTAAGCACGACTGAATCAGTCGGACGAAC
AGTGATTTACCATAACCGGTCATGTTTAAAGAAAAATCTGAATGCACCTG
TTACATCATCCTGTTGTTACAAATCTAACACGTGAAGTGAATTACAAACA
CGCATCGAACATGTACTGAATACTGAATAAATGTAGATGACATAGTAGTA
TAAAGTTCCTATGGGCGTGTTGTAAAACGAAAATTTAACATTAAGACAGT
TTCGAATTCAATTTTTACCGGATTTAAGGAATTATATTTAACCGTAAGCC
ACCGTTCTGCGGAACGATCCTGACAGTCACGTCATTTTCAACTTTAGTGG
CTTTCAAATTTAACACTTTAAAAAGACTTCTAACTTTTCTTTAACCTAAA
GTTCCCCGTCTCTTATATAGATAACCCTGCATGATAAATAATGGTAAGTT
AAAGTATACTAATATAGATGGCAATTAAGGATAGGACGAAGTATACTAAT
AAACCTCTCCCATTCATGTTCAGGTGAATACTGCTCTTTCTATTCTCTGG
ACTATGTTGAAGCCTAAAATCATACTTCACCTGCAATTATACTGTACCTC
GTAGGTATCTACGAATACTACTAAAACTGTATTGTCTTTGATATGTACCT
ACTCCGAGTATAAATTATATACAATGACAATCATGTAGAAGGTGACCTCA
CCTAAACGTCTATGTACCCAGAAGACGCAATGGTGCTCTGATTTGTAATA
TATATCTCAGTACCTCTATCCTCCTCTATGACACTGATGGCCTTGGAGTA
ATATCCCAGGTGGTTGTTCTGAGTTGACTTTTCTTTAACCTAAATTTCCC
CGTCTCTTACATGGATAACCCTGCATGATAAACAATGGTAAGGTAAAGTA
TACTAACATAGATGGCAATTATTGGTAGGACGTAGTACACTAATGAACCT
CTCCCATTCTACTAGTATTGCTTGATTATTGATTGGTGAATAAGATATGA
CCAAAAATGACACCCACCCGAGCCTAGATAATTTAGTGTAACCTAAGCTC
CCTGTCTACCCCAAACTGAAATGGTATATTCATCAACAACCTTACATCCC
TACGTCGAATGTACAATATTACTATTAATAATACCATTTGGTGGTAGTAC
TACTCTGTCTCTGGTTTTTGTCTAATGCTTTTATGGTGTCCCTGCATGGA
GATTAATGTAAATGTACAGTATAACGGTGGGTTTCTCCCCGACATTATAT
TGTTGACCCAATGTTATCTACATTGGGGAACCTGTTCAATACCATGAAGA
GGTTTTTGTCACTGCAGCCTTTGACCCCGCCTAAACGTTTTGACATTTCC
TCCCCCTACGGGGGATGCTCAAAAAGTCTAGGTGCTGTTCGGATTTTTCT
TTAAATAAGGCTGGCTGGCAGAGCAGTTTACGAGAAATCCATCTATTTCT
AGATTTAAGACATACAAGTCAAAGAAACATGTCTGGGCGGCCAAAGAGAG
CCCCAGCACCCAGCCAAAAGGCCCTGGAGGTCGCGAAGGACCATCAGCAG
TCCAGGGGCGCGGCGCGGACCAAGGATCGTGACATCTGTTTGCGTCTTGT
GAGTGTTTTTGTGGACTGCCTGTTCGGGGGATAGGCAACGGATTTTTTTC
GCAGCTGTTGCAGCTGCATGCGTCTGAGGACGGGCGTTCCGTCGTTTTTT
TTGTCAAGTACAGGCACTGCAAAAATCATCGTGGCATCCGTTTGCGTGTT
TTTGTGGACTGCTTGTTCGGGGAATGGGCAAGGGAATTTTTTCGCAGCTG
TTGGAGCTGCATGCATTCAAGGACTGGCTTCCGTCGTTTTTTTGTAAAGT
AGTACAGGCCCTGCAAAAATCATCGTGGCATCCGTTTGCGTCTTGCGCGT
GTTTTTGCGGCGCTGAAGCATGACCAAAGCTCGTGCCTTGCGCGCTATTC
TATCGCGAATGCGTAGGCGCGACATGATGACCTGAACTTTATACCCTCGC
CAGCGTGAGTGCTGGGAAGGACCGGTCTCACACCGCGGTCGTTAGGCTCA
GCTCGTTCGGCTGCCTAATTTTTATTTTCAAATTTAAGAGGGGCACTGTC
ACGCAACCACCAATCACGTAAGCCACCTTAAAGTTGCAAATATTTGCCTG
GAGGAAGTTTCCAGGAAATACCTTAAATTATAATTCCTTATCCTTAAATC
TCCACAATTTGGAGCTCCAACACGCCGTTACTTTCAACATACCCACTTCA
TACCAATAGTGGGGGTGGGAAAGAGAGGCGAATATTAATTGGTCCATAGT
GACCTGCTAAGGCAGCACTCGTTCGGAACTACGTTGAGGTTTACTGGCCA
TGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGA
CCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATAAATGG
ACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAG
CCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCG
TCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATCCAT
TTTCCCTGTTCAGCTGACCACAAGCAGGATTGGCAACCATACCTGGTTGA
TCCATACTCTGTTATAAGTGATGACCATACATACATACATACAATTCGAA
ACTGTTTGTTGTTGCCAATCCTATTTTATCGTAACGTTCTTACGTACTAC
TGTATACTATAGCTCACAGTGTATTGTGGTATTGTTCGATGATACTTATG
ATCGTATACTGTTATTACTATAGTACTGTACTATCTGTATTGTACTGTAC
ACTGATTAAATTATGTATAACAGCCTACCGTATCTAATTAAGTACTTTAC
ATTGTTTTTGGATGGTTTGGATTGTGGTATGTACTATTATACAATGTTTT
TGTTTGTTGAAGTTTTTGGTGTCCCTGCATGGCGATTAATGTAAGTGTAC
AGTATAACGGTGGGCTTCTCCCCGACATTATGTATGTGTGGCCGCACATA
TAGCAAGAGTAAGGATCAACCTGGTAAGGTTGCCAATCCTGCTCGTGGTC
AGCTGAACAGGGAAAAGACTATTCCCCTGTCCGCGTTCGTGCCTGAGAAT
TTGGTCTCGCGAGACGCTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCA
TCTCCATACTCAGGCTGAATCTGGTGCTTACGGGATTCCTCCCGAGTTCC
GCGGCGGCGTCCATATATTTATATTAAACCGCCATACGCCATCGGGTCAG
TCCCAAGTTTATGGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCG
AGAGTCCGTCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGT
GCTGCCTTAGCAGGTCACCATGGACCAATGAATATACGCCTCTCTTTCCC
ACACCCACTAATGGTTATGAAGTGGGCATGTTGAAAGTAACAGCGATACT
GTTGACCCAATGTTACTACCATCGGGGAACCCGTTTACATGCAATGAAGA
GGTTTTGTTTTTGCAGCCTATGATCCCACTTAAACGTTTTGACATTCCCC
CCCGCCCTGACTGAGGGATACTCGGGAGGTCTAGGCGCATTCAGATTTTT
CTTTTAAAAACTAAGGAACGGTCGCCCCGGTAGCTCAGAGGTAACCTCGT
AACCTTCTGAAACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTT
TCTCACTAAAAAATGAAAGTAAAAATGCCCAATAAGTGGCGAACGATTAA
ATCGTTAGTACACAAAATCGACTGCACGGTCGACAAGAGAAAGGAACGGC
TGAATCCTTCTCGCGATAAAAACTAAGGCACGCACCGCAGAAGGAAGGTA
GATGAGAAATCCTGTGTGACCCCGGCTGGTAAGTCCAACGAACTTGATGC
CCAGAATGAATGGGAAGAAAACACACACACATACACACACTTCGTAATAA
GTATCATTGATTCCCCCTCGGGAGGATCAATGCGAGTGGCATATAATAAC
TATTAATAGGATGACAGGGCTGGATTGCGCGGTTGTGTGCAATTTAATAA
ATACACACACACACACACGGATCAATGCGAGTGGCATAGAATGACTAGGA
TGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACA
CACACACACACGGGTTTTCGTAATAAGTATCATTGATCCCCCCTCGGGAG
GATCAATGCGAGTGGCATAGAATGACTAGGATGGCAGGGCCGGATTGCGT
GGTTATGCGCAATTTAATAAATACACACACACACACACACACACAAGGAA
GCAGGGGTGGGAGCACAAGGAACTCTGGGCTTAAGTAAGAATTGTACAAG
TAGAGAGAGCGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTCGTAATA
AGTATCATTGATCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGAC
TAGGATGACACGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATACAC
ACACACACACACACACACAGTTTTCGTAATAAGTATCATTGATCCCCCCT
CGGGAGGATGAATGCGAGTGGCATAGAATGACTAGGATGACCGGGCCGGA
TTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACACACACAC
AAGGAAGCAGGGGTGGGAGCACAAGGAACTCTGGGCTTAAGTAAGAATTG
TACAAGTAGAGAGAGCGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTC
GTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATA
GAATGACTAGGATGACAGGGCCGGATTGTGTGATTATGTACAATTTAATA
AATACACACACACACACACACACACACTTTCATTCCGCACGCGTCACCAT
TTCTGCAGACAGGGAGTGGCACTTGCGAGTACTCGACAGTTCCGTTCGCA
AGGTCCGGTGTCTGTACAAGCGCACCGTACCGAGGGGGTAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig661:138207..143998-

>mRNA_F-serratus_M_contig661.17597.1 ID=mRNA_F-serratus_M_contig661.17597.1|Name=mRNA_F-serratus_M_contig661.17597.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig661:138207..143998- (Fucus serratus male)
ATGTGCAGAACAAAAGGATGCTCAGAAAGTCTAGGTGCGTTCTATATTTT
CTTCAAACAAATGTGCAGAACAAAAGGATGCTCAGAAAGTCTAGGTGCGT
TCTATATTTTCTTCAAACAAACAGGGAGTGGCACTTGCGAGTACTCGACA
GTTCCGTTCGCAAGGTCCGGTGTCTGTACAAGCGCACCGTACCGAGGGGG
TAACACAGGGAGTGGCACTTGCGAGTACTCGACAGTTCCGTTCGCAAGGT
CCGGTGTCTGTACAAGCGCACCGTACCGAGGGGGTAAC
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