mRNA_F-serratus_M_contig6608.17593.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6608.17593.1
Unique NamemRNA_F-serratus_M_contig6608.17593.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6608.17593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6608contigF-serratus_M_contig6608:12674..13276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.3140535-CDS-F-serratus_M_contig6608:12673..127951622932028.3140535-CDS-F-serratus_M_contig6608:12673..12795Fucus serratus maleCDSF-serratus_M_contig6608 12674..12795 -
1690964110.0030549-CDS-F-serratus_M_contig6608:12673..127951690964110.0030549-CDS-F-serratus_M_contig6608:12673..12795Fucus serratus maleCDSF-serratus_M_contig6608 12674..12795 -
1622932028.333779-CDS-F-serratus_M_contig6608:13236..132761622932028.333779-CDS-F-serratus_M_contig6608:13236..13276Fucus serratus maleCDSF-serratus_M_contig6608 13237..13276 -
1690964110.0143483-CDS-F-serratus_M_contig6608:13236..132761690964110.0143483-CDS-F-serratus_M_contig6608:13236..13276Fucus serratus maleCDSF-serratus_M_contig6608 13237..13276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6608.17593.1prot_F-serratus_M_contig6608.17593.1Fucus serratus malepolypeptideF-serratus_M_contig6608 12674..13276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6608.17593.1

>prot_F-serratus_M_contig6608.17593.1 ID=prot_F-serratus_M_contig6608.17593.1|Name=mRNA_F-serratus_M_contig6608.17593.1|organism=Fucus serratus male|type=polypeptide|length=54bp
RVAARTLRTRQLLGNRERRQAAVLREAQQNAMYKDGYLRAFDPARPLHLE
SWVQ
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mRNA from alignment at F-serratus_M_contig6608:12674..13276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6608.17593.1 ID=mRNA_F-serratus_M_contig6608.17593.1|Name=mRNA_F-serratus_M_contig6608.17593.1|organism=Fucus serratus male|type=mRNA|length=603bp|location=Sequence derived from alignment at F-serratus_M_contig6608:12674..13276- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGGTAAAAAAAT
ACCGTTGCAAACATGTTGCACTTCGTTACCAACATGCATTGCCCAGCCCT
ACGCACTACAGACCACGACATTGTGCCAAAAGGATTATCGAGGATTTGCA
GCAGTAGCACAACAGAGCACGCAATTGTCTTTACATATACGATCGACAAT
GTACAGGATTAGGGTCCATGCTAGAAACTGTGTGCTCGAAACTGTTCAGA
AGGAGAGCGCGCAGGTCTACCATCTACACGAATGTACACCAGTAGTTATT
CTACACATGCTATGAAGATTGTACACCACTAGGGTCTGTGCTAAACACAC
TGTGTTCGAAATTGTTCATGATAAGAGCGTGAAGGTCTATCGCCTGCAGG
TGTACAAACTCGTTGTCAAACAATCGGCACAAATACACTCATCGATACTA
TCCTGTTTTTCAAAACTATTCTGTTTCACAGGAAATCGTGAACGCCGACA
GGCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGTT
ATCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGTG
CAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6608:12674..13276-

>mRNA_F-serratus_M_contig6608.17593.1 ID=mRNA_F-serratus_M_contig6608.17593.1|Name=mRNA_F-serratus_M_contig6608.17593.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig6608:12674..13276- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGCGGGTGGCTG
CTCGGACACTACGGACTCGCCAGCTCCTAGGAAATCGTGAACGCCGACAG
GCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGTTA
TCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGTGC
AGGAAATCGTGAACGCCGACAGGCTGCGGTACTGCGCGAAGCACAGCAAA
ATGCTATGTATAAGGACGGTTATCTGCGCGCCTTCGACCCCGCAAGACCT
CTGCATTTAGAGTCGTGGGTGCAG
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