mRNA_F-serratus_M_contig6604.17592.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6604.17592.1
Unique NamemRNA_F-serratus_M_contig6604.17592.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: D8LDW7_ECTSI (Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW7_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 5.110e-163
Identity = 226/324 (69.75%), Postives = 265/324 (81.79%), Query Frame = 1
Query:   31 MVGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANNDEMLTVENWENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFAREHASRDFVLFGPDPGYLDGGK---KYNNMFSAQYDAVVSALSKLG--VIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAAAASVNGTPLRPGHMDVYLFELYDESLKHGADHEKHFGLFDVKGAQK 987
            MVGVNIGD  +P+PW PEKIE AL+QAR+SGYF+CDAVKFWHCDA RVLPTA QDHIRKVMVHANN EML+V +W  W+  +L P+V  +R   V KEIFLAVGNE+LAPWHVE FG RL PC++EV+ AL++T L+DRVKLVTPLEMSILG SYPPS GQ++EA+++VV +VVR LVRIGSPFCINVYPFFAREHASRDFVLFGPD GY DG     +Y NMF+AQ+DAVV+ +SKL   ++GAD +++VVTE GWP+A + M D  SARRFTAGA  AS  GTPLRPG +DVYLFELYDE  + GA HEKHFGLFD+ G  K
Sbjct:    1 MVGVNIGDTLTPTPWAPEKIEQALAQARSSGYFSCDAVKFWHCDASRVLPTAQQDHIRKVMVHANNHEMLSVSDWRAWVETHLSPVVGGLRGQRVHKEIFLAVGNEALAPWHVEMFGRRLVPCMKEVYTALLQTGLSDRVKLVTPLEMSILGASYPPSAGQVAEAHLEVVSEVVRFLVRIGSPFCINVYPFFAREHASRDFVLFGPDEGYTDGEGGCLRYTNMFNAQFDAVVTGISKLKDCIVGADQLEMVVTEVGWPTAGSGMADKESARRFTAGATLASTKGTPLRPGRLDVYLFELYDECQQDGAAHEKHFGLFDIGGCPK 324          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A5K1GLM5_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GLM5_9MAGN)

HSP 1 Score: 152 bits (385), Expect = 7.850e-39
Identity = 116/332 (34.94%), Postives = 169/332 (50.90%), Query Frame = 1
Query:   25 QKMVGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANNDEMLTVEN----WENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAY--VDVVRDVVRLLVRIGSPFCINVYPFFAREHASRD----FVLFGPDPGYLDGGKK--YNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPS---ARRFTAGAAA--ASVNGTPLRPGH-MDVYLFELYDESLKHGADHEKHFGLF 966
            Q  +GVN G++    P PP  +   L Q+ + G      V+ +  D E V+       I  + +  +N ++ ++       + W+  N+ P             + ++VGNE L+ +      + L P ++ +HAAL+E  LAD++K+ T   M++L  S PPS G     Y  VDV++ +V  L + GSP  IN YP+FA     R     F LF  + G  D   K  Y NMF AQ DAV SAL+ LG      +D+VV ETGWP        GPS   A+ +  G  A   S++GTPLRPG  +D Y+F L+DE LK GA  E++FGL+
Sbjct:    2 QSYIGVNYGEVADNLP-PPATVAKLL-QSTSIG-----KVRMYGADPE-VIKALAHTGIG-IFIGTSNGDIFSMSGDPSAAKQWVAANILPYY------PASDIVLVSVGNEVLS-YGDGNMVSHLVPAMQNLHAALLEVSLADKIKVTTVHSMAVLQQSDPPSTGAFRPTYAGVDVMKQLVAFLQQTGSPLAINPYPYFAYGSDPRPETLAFCLFQQNQGRFDPNTKITYYNMFDAQVDAVHSALASLGFKD---VDIVVAETGWPYQGGATEVGPSVENAKAYNGGLVAHLRSMSGTPLRPGKPVDTYIFALFDEDLKGGATSERYFGLY 314          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: B8LRW3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LRW3_PICSI)

HSP 1 Score: 152 bits (384), Expect = 5.420e-38
Identity = 113/340 (33.24%), Postives = 163/340 (47.94%), Query Frame = 1
Query:   13 ASVSQKMVGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANND--EMLTVENWENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFARE----HASRDFVLFGPDPGYLDGGK--KYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAAAASVN---------GTPLRPGH-MDVYLFELYDESLKHGADHEKHFGLFDVKG 978
            ++ S    G+N G +    P P  ++   L QA        + VK +  + E VL       I  ++   N +   M        W+N N+R  +         K I +AVGNE       +   A L P ++ +H+ALV       +++ TP  +++LG SYPPS G        +++ ++  L +IGSPF IN+YP+FA +      S D+VLF P+ G +D     +YNNM  AQ DAV SALS LG      ++V V+ETGWPS    MGD   A      A   + N         GTPLRP   +  YLF L++E +K G   E++FGLF   G
Sbjct:   32 SNTSASTTGINYGQVADNLPSP--EVVVGLLQANN-----INKVKLFSAN-ETVLKAFANTGIELIVGIGNENVGNMTDPTKATEWVNENIRTYL------PATKIIGIAVGNEVYTGTDTQLM-ANLVPAMKNIHSALVSIGADMNIQITTPHSLAVLGNSYPPSAGSFVSDLNSLMKPLLDFLSQIGSPFFINIYPYFAYKSNPSQVSLDYVLFQPNAGVIDPNNNIRYNNMLYAQVDAVYSALSALGYAN---LEVTVSETGWPS----MGDASEAGATLQNAQTYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKTGPTSERNFGLFKPDG 349          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: Q0J034_ORYSJ (Os09g0533200 protein n=10 Tax=Oryza TaxID=4527 RepID=Q0J034_ORYSJ)

HSP 1 Score: 148 bits (374), Expect = 4.570e-37
Identity = 89/227 (39.21%), Postives = 126/227 (55.51%), Query Frame = 1
Query:  328 FLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFAREH----ASRDFVLFGPD-PGYLDGGKKYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAA--AASVNGTPLRPG-HMDVYLFELYDESLKHGADHEKHFGLFDVKGAQ 984
            +LAVGNE L  ++ + +   L P +  +HAALV   L D+VK+ +    S+L  SYPPS G    A +DV+R ++R L   G+PF +N YPF +  +        + LFG   P   DG   Y NMF A  DA+ +AL + G     A+ + VTETGWP+A        +A  + A      A   GTP RPG  ++V+LF+LYDE  K GA+ E+HFG+F   G++
Sbjct:  122 YLAVGNEVL--YNNQFYAPHLVPAMHNLHAALVSLGLGDKVKVSSAHASSVLASSYPPSAGAFDAASLDVLRPMLRFLADTGAPFMVNTYPFISYVNDPVNVQLGYALFGAGAPAVSDGALVYTNMFDATVDALAAALDREGF---GAVPIAVTETGWPTAGHPAATPQNAAAYNAKIVERVARGAGTPRRPGVPVEVFLFDLYDEDGKPGAEFERHFGIFRADGSK 343          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: UPI0009E24B0E (glucan endo-1,3-beta-glucosidase-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E24B0E)

HSP 1 Score: 144 bits (364), Expect = 9.590e-36
Identity = 87/241 (36.10%), Postives = 135/241 (56.02%), Query Frame = 1
Query:  262 WINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFAR----EHASRDFVLF-GPDPGYLDGGKKYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAAAASVNGTPLRPG-HMDVYLFELYDESLKHGADHEKHFGLF 966
            W+N N++P    +     F+  ++AVGNE +   H +     + P ++ +  ALV   L DR+K+ T +  ++LG SYPPS G  S   + +++ +V  L    +P  +NVYP+F+     +  S D+ LF  P P  +DG  +Y N+F A  DA+ SAL  +G  G D +++VV+ETGWPS   ++    +A+ + +        GTP RPG H+D YLF L+DE+LK     E H+GLF
Sbjct:  100 WVNDNIQPFSPDVN----FR--YIAVGNELIPGSHPQD----ILPAMQNLQNALVSVGLQDRIKVSTSVSTNVLGNSYPPSAGTFSSNILPILQPIVAFLSANDAPLLVNVYPYFSYIGNPDSISLDYALFTSPAPVVIDGQLQYQNLFDAIIDALFSALENVG--GGD-VNLVVSETGWPSDGEEVATLQNAQTYLSNLINHVGQGTPKRPGIHIDTYLFALFDENLKQPQGTENHYGLF 327          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A6J1EML1_CUCMO (Glucan endo-1,3-beta-D-glucosidase n=11 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1EML1_CUCMO)

HSP 1 Score: 145 bits (365), Expect = 2.920e-35
Identity = 107/330 (32.42%), Postives = 165/330 (50.00%), Query Frame = 1
Query:   34 VGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANNDEMLTVENW---ENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFARE----HASRDFVLFGPDPGYLDGGK--KYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPS---ARRFTAGAAA--ASVNGTPLRPGH-MDVYLFELYDESLKHGADHEKHFGLFDVKG 978
            VGVN G + +  P P    E+ +   ++ G     A K    DA   +  A  +   + +V   N+ +  ++N    + W+  N++  +   +  ++F      VGNE L  ++       L P ++ VH ALV   L  +V + T   ++IL  SYPPS G      VD +  ++   V+IGSPF IN YP+FA +      S DFVLF P+ G LD G   +Y+NM  AQ DAV SAL     +G   + V ++ETGWPS   D   G +   A+++            GTPLRP   +++Y+F L++E++K G   E+++GLF   G
Sbjct:   32 VGVNYGQIANNLPTP----ENVIPLVKSIG-----ATKVKLYDASPKVLRAFANTSVEFIVGLGNEYLAKMKNTACAQEWVKNNVQAYLPGTKITSIF------VGNEVLT-FNDTSLNDNLLPAMQSVHTALVNLGLDKQVAVTTAHSLAILETSYPPSAGIFRSDLVDCLVPILDFQVKIGSPFLINAYPYFAYKANPKQVSLDFVLFQPNQGVLDPGSNLRYDNMLFAQIDAVYSALD---AVGYKKLPVHISETGWPSKGDDDEAGATPENAKKYNGNLLKYICQKKGTPLRPSSDLNIYVFALFNENMKPGPTSERNYGLFKPDG 342          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A6P5F4P1_ANACO (glucan endo-1,3-beta-glucosidase 10 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F4P1_ANACO)

HSP 1 Score: 147 bits (371), Expect = 4.180e-35
Identity = 120/334 (35.93%), Postives = 160/334 (47.90%), Query Frame = 1
Query:   34 VGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANNDEMLTVENWE-----NWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQI-SEAYVDVVRDVVRLLVRIGSPFCINVYPFFAREH----ASRDFVLFGPDPGYLDGGK--KYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAAAASVN----------GTPLRP-GHMDVYLFELYDESLKHGADHEKHFGLF 966
            +GVN G + +  P PP+ +E   SQ  T        VK +  D   VL       IR V+   N  E+L            W+ RN+       +   V      AVGNE  A        A L P +  VHAAL    L   VK+ +P+ ++ L  SYPPS G   S+    V+R ++ LL R GS   +N YPFFA        S D+ LF P+ G LD G   KY ++F AQ DAV +A+   G +G + + VVV+ETGWPS     GDG         AAA + N          GTP RP G +DV+LF L++E LK G   E+++GLF
Sbjct:   36 IGVNYGRVANNLPPPPKVVELLKSQGITQ-------VKLYDADPG-VLRAFAGSGIRVVVALPN--ELLAAAASRPGYALGWVQRNVAAYYPATQIAAV------AVGNEVFAS--PRNLTALLVPAMTNVHAALARLGLDAAVKVSSPIALTALRASYPPSAGAFRSDLAEPVMRPMLDLLGRTGSYLMVNAYPFFAYSANAALISLDYALFRPNAGVLDPGSGLKYYSLFDAQVDAVYAAM---GAVGGEEVRVVVSETGWPS----KGDGKETGAGAGNAAAYNGNLVRRVLSGNAGTPRRPQGDVDVFLFGLFNEDLKPGPTSERNYGLF 344          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A2K1XG86_POPTR (Glucan endo-1,3-beta-D-glucosidase n=8 Tax=Populus TaxID=3689 RepID=A0A2K1XG86_POPTR)

HSP 1 Score: 143 bits (361), Expect = 6.670e-35
Identity = 108/327 (33.03%), Postives = 158/327 (48.32%), Query Frame = 1
Query:   34 VGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLPTACQDHIRKVMVHANNDEMLTVENW---ENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAY-VDVVRDVVRLLVRIGSPFCINVYPFFAREHASRDFVLFGPDPGYLDGGKK--YNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAAAASVN---------GTPLRPGH-MDVYLFELYDESLKHGADHEKHFGLF 966
            +GVN G L +  P PP ++ H L ++        + V+ +    E +L       I  V V   ND++  + N    + W+  N++P VR      +       VGNE ++  + +   A L P ++ +HAALV+  L  R+K+ TP  + IL  S PPS G+  + Y   V++ V+  L    SPF IN YPFF     + D+ LF    G  D   K  Y NM  AQ DAV SA+  LG      +++V++ETGWPS    +GD          AA  + N         GTPL P    + Y+F L++E LK G   E++FGLF
Sbjct:   33 IGVNYGTLANNLP-PPAQVAHFLLESTI-----INRVRLFDASTE-ILRAFAHTGIA-VTVTVTNDQIPHLTNIGFAQEWLKSNVQPHVRTTNIVRIL------VGNEVISTAN-KLLIASLVPAMQALHAALVDASLDSRIKISTPHSLGILSSSSPPSGGKFRQGYDTHVLKPVLSFLRATNSPFMINPYPFFGSSPETLDYALFRTSSGVFDENTKLSYTNMLDAQLDAVFSAMKLLGFSD---IEIVISETGWPS----LGDSSQVGVDAESAAQYNRNLMQHVTSGAGTPLMPNRTFETYIFALFNEDLKPGPTCERNFGLF 337          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A8J5VKG8_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VKG8_ZIZPA)

HSP 1 Score: 142 bits (358), Expect = 8.890e-35
Identity = 86/227 (37.89%), Postives = 126/227 (55.51%), Query Frame = 1
Query:  328 FLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFAR----EHASRDFVLFGPD-PGYLDGGKKYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAA--AASVNGTPLRPG-HMDVYLFELYDESLKHGADHEKHFGLFDVKGAQ 984
            +LAVGNE L  ++ + +   L P ++ +H+ALV   L  ++K+ +    S+L  SYPPS G    A + V+R +++ L   G+PF +N YPF +      +    + LF    P   DG   Y N+F A  DA+V+AL K G     AM V VTETGWP+A        +A  + A     AA   GTP RP   ++V+LF+LYDE  K GA+ E+HFG+F  +G++
Sbjct:  123 YLAVGNEVL--YNNQFYAPHLVPAMKNLHSALVTLGLDGKIKVSSAHASSVLASSYPPSAGAFDAASITVLRPMLQFLADTGAPFMVNTYPFISYVNDPANVQLGYALFAAGAPAVTDGALVYTNLFDATLDALVAALEKEGF---GAMPVAVTETGWPTAGHPAATPQNAAAYNAKIVERAARGAGTPRRPSLPVEVFLFDLYDEDGKPGAEFERHFGIFRAEGSK 344          
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Match: A0A2K3M1U4_TRIPR (Glucan endo-1,3-beta-D-glucosidase n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3M1U4_TRIPR)

HSP 1 Score: 142 bits (357), Expect = 9.950e-35
Identity = 84/250 (33.60%), Postives = 137/250 (54.80%), Query Frame = 1
Query:  256 ENWINRNLRPIVRRIRRCTVFKEIFLAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSILGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFA----REHASRDFVLFGPDPGYLDGGKKYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTETGWPSACADMGDGPSARRFTAGAA--AASVNGTPLRPGHMDVYLFELYDESLKHGADHEKHFGLFDVKGAQK 987
            +NW+ + + P  + +      K  ++ VGNE + P   E     + P L  +  A+    L D++K+   ++M+++G SYPPS+G  S+     ++ ++  LV  G+P   NVYP+FA    ++    D+ LF    G  D G  Y N+F AQ D+V +AL K   +G   + ++V+E+GWPSA  D     +A+ + +       S NGTP RPG ++ YLF ++DE+ K+GA  E+HFGLF+   + K
Sbjct:  101 KNWVTKYVTPYAQDV------KIKYITVGNE-IHPSDNE--AQSILPALNNIQNAISSANLQDQIKVSIAIDMTLIGKSYPPSDGVFSDQAKSYIQPIIDFLVSNGAPLLANVYPYFAYIGDKQSIPLDYALF-KQQGNNDVG--YQNLFDAQLDSVYAALEK---VGGSNVKIIVSESGWPSAGEDSATTDNAKTYLSNLINHVKSGNGTPKRPGTIETYLFAMFDENQKNGAATEQHFGLFNPDKSSK 335          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6604.17592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW7_ECTSI5.110e-16369.75Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectoc... [more]
A0A5K1GLM5_9MAGN7.850e-3934.94Uncharacterized protein (Fragment) n=4 Tax=Nymphae... [more]
B8LRW3_PICSI5.420e-3833.24Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
Q0J034_ORYSJ4.570e-3739.21Os09g0533200 protein n=10 Tax=Oryza TaxID=4527 Rep... [more]
UPI0009E24B0E9.590e-3636.10glucan endo-1,3-beta-glucosidase-like n=1 Tax=Phal... [more]
A0A6J1EML1_CUCMO2.920e-3532.42Glucan endo-1,3-beta-D-glucosidase n=11 Tax=Cucurb... [more]
A0A6P5F4P1_ANACO4.180e-3535.93glucan endo-1,3-beta-glucosidase 10 n=1 Tax=Ananas... [more]
A0A2K1XG86_POPTR6.670e-3533.03Glucan endo-1,3-beta-D-glucosidase n=8 Tax=Populus... [more]
A0A8J5VKG8_ZIZPA8.890e-3537.89Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A2K3M1U4_TRIPR9.950e-3533.60Glucan endo-1,3-beta-D-glucosidase n=2 Tax=Trifoli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6604contigF-serratus_M_contig6604:10554..13385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score153.3
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog3880.AES58743
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the glycosyl hydrolase 17 family
EggNOG OGs28IMB@1,2QQY7@2759,37SE1@33090,3G9FB@35493,4JW9U@91835
COG Functional cat.G
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons3
Model size1371
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6604.17592.1prot_F-serratus_M_contig6604.17592.1Fucus serratus malepolypeptideF-serratus_M_contig6604 10584..13007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.1713996-UTR-F-serratus_M_contig6604:10553..105831622932028.1713996-UTR-F-serratus_M_contig6604:10553..10583Fucus serratus maleUTRF-serratus_M_contig6604 10554..10583 +
1690964109.9475992-UTR-F-serratus_M_contig6604:10553..105831690964109.9475992-UTR-F-serratus_M_contig6604:10553..10583Fucus serratus maleUTRF-serratus_M_contig6604 10554..10583 +
1622932028.2585487-UTR-F-serratus_M_contig6604:13007..133851622932028.2585487-UTR-F-serratus_M_contig6604:13007..13385Fucus serratus maleUTRF-serratus_M_contig6604 13008..13385 +
1690964109.992565-UTR-F-serratus_M_contig6604:13007..133851690964109.992565-UTR-F-serratus_M_contig6604:13007..13385Fucus serratus maleUTRF-serratus_M_contig6604 13008..13385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.2049825-CDS-F-serratus_M_contig6604:10583..107601622932028.2049825-CDS-F-serratus_M_contig6604:10583..10760Fucus serratus maleCDSF-serratus_M_contig6604 10584..10760 +
1690964109.9626806-CDS-F-serratus_M_contig6604:10583..107601690964109.9626806-CDS-F-serratus_M_contig6604:10583..10760Fucus serratus maleCDSF-serratus_M_contig6604 10584..10760 +
1622932028.221826-CDS-F-serratus_M_contig6604:11520..121061622932028.221826-CDS-F-serratus_M_contig6604:11520..12106Fucus serratus maleCDSF-serratus_M_contig6604 11521..12106 +
1690964109.9724052-CDS-F-serratus_M_contig6604:11520..121061690964109.9724052-CDS-F-serratus_M_contig6604:11520..12106Fucus serratus maleCDSF-serratus_M_contig6604 11521..12106 +
1622932028.2395117-CDS-F-serratus_M_contig6604:12807..130071622932028.2395117-CDS-F-serratus_M_contig6604:12807..13007Fucus serratus maleCDSF-serratus_M_contig6604 12808..13007 +
1690964109.9820404-CDS-F-serratus_M_contig6604:12807..130071690964109.9820404-CDS-F-serratus_M_contig6604:12807..13007Fucus serratus maleCDSF-serratus_M_contig6604 12808..13007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6604.17592.1

>prot_F-serratus_M_contig6604.17592.1 ID=prot_F-serratus_M_contig6604.17592.1|Name=mRNA_F-serratus_M_contig6604.17592.1|organism=Fucus serratus male|type=polypeptide|length=321bp
MVGVNIGDLFSPSPWPPEKIEHALSQARTSGYFTCDAVKFWHCDAERVLP
TACQDHIRKVMVHANNDEMLTVENWENWINRNLRPIVRRIRRCTVFKEIF
LAVGNESLAPWHVERFGARLAPCLREVHAALVETRLADRVKLVTPLEMSI
LGCSYPPSEGQISEAYVDVVRDVVRLLVRIGSPFCINVYPFFAREHASRD
FVLFGPDPGYLDGGKKYNNMFSAQYDAVVSALSKLGVIGADAMDVVVTET
GWPSACADMGDGPSARRFTAGAAAASVNGTPLRPGHMDVYLFELYDESLK
HGADHEKHFGLFDVKGAQKE*
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mRNA from alignment at F-serratus_M_contig6604:10554..13385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6604.17592.1 ID=mRNA_F-serratus_M_contig6604.17592.1|Name=mRNA_F-serratus_M_contig6604.17592.1|organism=Fucus serratus male|type=mRNA|length=2832bp|location=Sequence derived from alignment at F-serratus_M_contig6604:10554..13385+ (Fucus serratus male)
CAGCAGCAGGGAGCAAGCGTCAGCCAAAAAATGGTGGGGGTCAACATCGG CGATCTCTTCAGCCCTTCACCGTGGCCGCCGGAGAAGATCGAACACGCCT TGTCACAAGCCAGGACTTCCGGATACTTCACCTGCGATGCGGTGAAATTC TGGCACTGCGACGCCGAGCGCGTCTTGCCCACCGCCTGCCAGGACCACAT CCGAAAGGTGCGCTATGAATATTGATATATGAATATTGATATATGAATAT TGATATATATGAATATTGATATATATGAATATTGATATATATGAATATTG ATACATGAATATTGATTATTTGCCATTCTTGCGTGCGAGATACCCTTGGC GCAGACGCATTGACAGAACTCCAACGGTGTGATCAAAAGACGCGATGAAG CGATGATGGTGCTTGACTCTTAGAAGTACTGCGTAGTCTCTCTCTCTCTC TTTCTCTCTCTTTCTCCCTCAAGGTACAAATGGTGTGTACCGGGTACGAT CATGTAGGCTACCCTTATCCTTGAAGCACAATCACCACCACCGGCAACAA ACAGTCCTCTCAACAACGTCCAAACAATCGCAAAAGTTCCGCGAAATAGA GGGAATGCGGTGGTGCTCCCTGTTGAGAGGAACCCCATACCTCGTCCCCA AGAGTCGAGATGTAACGTGTAGTAGGTTAAGATTGCGAATATTCGAGTGC GTGCTCCAAGTTCCTCCCGGCACACAGTTGAGTCGTACTGACGAACTGCG CTGTGTCGCACGAACACCGTGCGTAGTCCTCCTGAACCCATTTCCTTGCT ATGCGAACGCACGGTGGGAATTTGGATTGTAAGAGCTTTGCAAAAAAATA AATGGGGCGGGGGGGGTGTTGCAGGTGGGGAGTTGAGGGAGATAAGCATG GAGGCTTTATTTTTCAAAAACATCCCACGAATCCTCCATTACTGCCGACG CTTCTCGCGGCGACCAGGTGATGGTCCACGCCAACAACGACGAGATGCTG ACGGTCGAGAACTGGGAGAACTGGATCAACCGCAACCTCCGGCCGATCGT TCGTAGAATCCGCCGATGCACGGTGTTCAAGGAGATCTTTCTAGCCGTGG GGAACGAGTCGCTGGCCCCATGGCATGTCGAACGCTTTGGTGCCAGGCTG GCCCCCTGCCTCCGCGAAGTTCACGCCGCCCTCGTAGAGACCCGTCTCGC CGACAGAGTCAAGCTAGTGACACCGCTGGAGATGTCCATCCTGGGCTGCT CCTACCCGCCGAGCGAGGGGCAGATTTCCGAGGCGTACGTGGACGTGGTA AGGGACGTGGTGCGCCTGCTCGTGAGGATCGGTTCGCCGTTCTGCATCAA CGTCTACCCGTTCTTCGCTCGGGAGCACGCGTCCCGAGATTTCGTCCTGT TCGGCCCCGACCCCGGGTACTTGGACGGCGGGAAAAAGTACAACAACATG TTCTCGGCCCAGTACGACGCGGTCGTCTCGGCGCTCTCGAAGCTGGGCGT CATAGGGGCGGATGCTATGGATGTGGTCGTAACAGAGACGGGTTGGCCAT CTGGTGAGCGAGCAGTGTCCTGTAAAGCAGGGCGATAAAGTACATGACAT ACATACTACACACGCGCAGGGGTATTCCATCATTCCTGTTCGTGGCTTAG TCCGGAAGAGCAGTCATTCCGACTTTACCCCCGATAACAGTCAATAGCAT ATCTAGCGTTGTTATTAATAGTCGTTGACGAGATCTTTCCGACGCCGAAA GGTCTAACAAGATTGTGATCTAGAGTAGTAGAGCTCAAATCAATGGTCAA GAAAAAGGGATTGCGCGATCCTTTTCCAGGAGTGGTCTTTGGTGCTTGTA GTCGACCCTCGACCGTACGCGTACCTGGTGCATCACGCCTTCCTCCAGTG ATCTTAAGCAAGGGGTTCCAGTCCGGCGCCTGCTAAACGCTTGGACATTA CCACCAACACGTGTCAAACGCATACACGTTATGAGTTTTAGGGGTTCGTC GGGCCATGTAGTAAGTAGACTGTCTGGTCTGCAGTAGTGCATGCCTTCTG AGGCTATCTCGTCCATGACGTTACAGCTCTCTCTCCTCGTGTGGGGTTTC AATCAAAAAGGGAATCGAGAAGCAAGGAGTGAGATTATCGCACGACAAAC CCCCACCACCCACCCACCCCCCTCTCAAAAAAATGcCCCCCCCCCCCAAT CGTTGTAGGCTTCCTCGAGACCCTCTTCCGCCCTTTTCCCCGCCCCCACA ACAGCCTGTGCAGACATGGGAGATGGGCCGAGCGCGAGGAGGTTCACCGC GGGCGCCGCCGCCGCAAGCGTGAATGGGACGCCTCTCCGGCCGGGGCACA TGGACGTCTACCTCTTCGAGCTGTACGACGAAAGTCTCAAGCACGGCGCC GATCACGAGAAGCACTTCGGCCTCTTCGACGTTAAGGGAGCTCAGAAGGA ATAAATGTTGGGTTTTTTTGCTTTGTCCCGCACGCCCTGCAGTGTCGCTC GTTTTATCTACTTATCTTCTCCTCCGCTCTCGTTTGTTCCTTGGATGTGA AGTAAGTGTGTTAATATTTGTTCCTTGGATGATGATGTTTTGATTATTTT GGTGGATTTGGAGTCTTTCGTCAATCACCCTCGATGCCGCGGCGAGCTTG TTGCTTGCCCTGGTGCGTGGCGTTTGTTGCCGAAGATTTGCTGGATATCA AAATCGTTGCGCGTGGGCCGTTCATGTCTGGAACGTCCGAGATTTGTTTG GCACCATCATTTTTCTCATCATTTTCATAACGATTTGGCATATTTCGTGC TACATTTTCTATCAAATGTGTACACCATTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6604:10554..13385+

>mRNA_F-serratus_M_contig6604.17592.1 ID=mRNA_F-serratus_M_contig6604.17592.1|Name=mRNA_F-serratus_M_contig6604.17592.1|organism=Fucus serratus male|type=CDS|length=1926bp|location=Sequence derived from alignment at F-serratus_M_contig6604:10554..13385+ (Fucus serratus male)
ATGGTGGGGGTCAACATCGGCGATCTCTTCAGCCCTTCACCGTGGCCGCC
GGAGAAGATCGAACACGCCTTGTCACAAGCCAGGACTTCCGGATACTTCA
CCTGCGATGCGGTGAAATTCTGGCACTGCGACGCCGAGCGCGTCTTGCCC
ACCGCCTGCCAGGACCACATCCGAAAGATGGTGGGGGTCAACATCGGCGA
TCTCTTCAGCCCTTCACCGTGGCCGCCGGAGAAGATCGAACACGCCTTGT
CACAAGCCAGGACTTCCGGATACTTCACCTGCGATGCGGTGAAATTCTGG
CACTGCGACGCCGAGCGCGTCTTGCCCACCGCCTGCCAGGACCACATCCG
AAAGGTGATGGTCCACGCCAACAACGACGAGATGCTGACGGTCGAGAACT
GGGAGAACTGGATCAACCGCAACCTCCGGCCGATCGTTCGTAGAATCCGC
CGATGCACGGTGTTCAAGGAGATCTTTCTAGCCGTGGGGAACGAGTCGCT
GGCCCCATGGCATGTCGAACGCTTTGGTGCCAGGCTGGCCCCCTGCCTCC
GCGAAGTTCACGCCGCCCTCGTAGAGACCCGTCTCGCCGACAGAGTCAAG
CTAGTGACACCGCTGGAGATGTCCATCCTGGGCTGCTCCTACCCGCCGAG
CGAGGGGCAGATTTCCGAGGCGTACGTGGACGTGGTAAGGGACGTGGTGC
GCCTGCTCGTGAGGATCGGTTCGCCGTTCTGCATCAACGTCTACCCGTTC
TTCGCTCGGGAGCACGCGTCCCGAGATTTCGTCCTGTTCGGCCCCGACCC
CGGGTACTTGGACGGCGGGAAAAAGTACAACAACATGTTCTCGGCCCAGT
ACGACGCGGTCGTCTCGGCGCTCTCGAAGCTGGGCGTCATAGGGGCGGAT
GCTATGGATGTGGTCGTAACAGAGACGGGTTGGCCATCTGGTGATGGTCC
ACGCCAACAACGACGAGATGCTGACGGTCGAGAACTGGGAGAACTGGATC
AACCGCAACCTCCGGCCGATCGTTCGTAGAATCCGCCGATGCACGGTGTT
CAAGGAGATCTTTCTAGCCGTGGGGAACGAGTCGCTGGCCCCATGGCATG
TCGAACGCTTTGGTGCCAGGCTGGCCCCCTGCCTCCGCGAAGTTCACGCC
GCCCTCGTAGAGACCCGTCTCGCCGACAGAGTCAAGCTAGTGACACCGCT
GGAGATGTCCATCCTGGGCTGCTCCTACCCGCCGAGCGAGGGGCAGATTT
CCGAGGCGTACGTGGACGTGGTAAGGGACGTGGTGCGCCTGCTCGTGAGG
ATCGGTTCGCCGTTCTGCATCAACGTCTACCCGTTCTTCGCTCGGGAGCA
CGCGTCCCGAGATTTCGTCCTGTTCGGCCCCGACCCCGGGTACTTGGACG
GCGGGAAAAAGTACAACAACATGTTCTCGGCCCAGTACGACGCGGTCGTC
TCGGCGCTCTCGAAGCTGGGCGTCATAGGGGCGGATGCTATGGATGTGGT
CGTAACAGAGACGGGTTGGCCATCTGCCTGTGCAGACATGGGAGATGGGC
CGAGCGCGAGGAGGTTCACCGCGGGCGCCGCCGCCGCAAGCGTGAATGGG
ACGCCTCTCCGGCCGGGGCACATGGACGTCTACCTCTTCGAGCTGTACGA
CGAAAGTCTCAAGCACGGCGCCGATCACGAGAAGCACTTCGGCCTCTTCG
ACGTTAAGGGAGCTCAGAAGGAATAACCTGTGCAGACATGGGAGATGGGC
CGAGCGCGAGGAGGTTCACCGCGGGCGCCGCCGCCGCAAGCGTGAATGGG
ACGCCTCTCCGGCCGGGGCACATGGACGTCTACCTCTTCGAGCTGTACGA
CGAAAGTCTCAAGCACGGCGCCGATCACGAGAAGCACTTCGGCCTCTTCG
ACGTTAAGGGAGCTCAGAAGGAATAA
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