mRNA_F-serratus_M_contig660.17582.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig660.17582.1
Unique NamemRNA_F-serratus_M_contig660.17582.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 9.100e-73
Identity = 123/145 (84.83%), Postives = 137/145 (94.48%), Query Frame = 2 
Query:  284 VMAISQAAVEEIENVEEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSAISGL 718
            +MA+S AA EEI N+E+VP LKDPVAI+DFEALD+RVG IV+AELIPDP+H NKPSRKYLSLVVDLGNEKRRVVSAVR+IVDVEDAIGK+VL+AANVEEETILG PSRG+LLS SNFSK+PMPRTLRTVLLGGGGVPPGSA+SGL
Sbjct:    2 MMAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 9.470e-55
Identity = 102/161 (63.35%), Postives = 123/161 (76.40%), Query Frame = 2 
Query:  236 SHGSRGLHFRERGGAPVMAISQAAVEEIENVEEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSAISGL 718
            SH  R LH RE      +A+S A  EE  +  +VP L+  V+++ +EALD+RVG IV AE +PDP+H NKPSRKYLSLVV LGNE R ++S VR + DVE+AIGKSVL+ AN EEE ILGRPSRGRLL A+N+SK PMPRTLRTVLLGGG VPPGS ++GL
Sbjct:    5 SHAVRPLHHRE------VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP)

HSP 1 Score: 159 bits (402), Expect = 8.020e-42
Identity = 82/144 (56.94%), Postives = 115/144 (79.86%), Query Frame = 2 
Query:  287 MAISQAAVEEIENVE--EVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSAIS 712
            MA  + AV+E +N++  ++P +KD V+ +  ++LD+RVG I  A+LIPDPEH+ KPSRKYL L+V++G EKR +V+A R I DVE++IG+SVL+A NVE++T+LG  S GRLLSASN +++P+PRTLRTVL  GGG+PPGS +S
Sbjct:   61 MAFVKGAVDEEDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA)

HSP 1 Score: 102 bits (253), Expect = 5.970e-21
Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 2 
Query:  224 GLHGSHGSRGLHFRERGGAPVMAISQAAVEEIENVEEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSAISG 715
            GL     S GLH R            A V E  +    P +K  V  S FE++DVRVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI ANV    + G  S G +L+  N+   PMPR+ + +L G G +PPGS + G
Sbjct:   58 GLQRRVNSPGLHIRAH-------TETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA)

HSP 1 Score: 99.0 bits (245), Expect = 6.590e-20
Identity = 66/160 (41.25%), Postives = 89/160 (55.62%), Query Frame = 2 
Query:  245 SRGLHFRERGGAPVMAISQAAVEEIENVEEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPPGSAI 709
            S GLH R            A V E  +    P +K  V  S FE++DVRVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI ANV    + G  S G +L+  N+   PMPR+ + +L G G +PPGS +
Sbjct:   37 SPGLHIRAH-------TETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQL 189
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A2H0VUE8_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34 TaxID=1973936 RepID=A0A2H0VUE8_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-9
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 2 
Query:  260 FRERGGAPVMAISQAAVEEIENVEEVPT-----LKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSAS 628
            FR+     ++   Q   E+++ V+EV T     LKDP+    FE +D+RV  ++ A  +P        S+K L L+VD+G EKR +VS +    + E  +GK V+I AN+   TI+G  S+G +L+AS
Sbjct:  539 FRKVEDEEILLQVQKLGEKLKEVKEVTTTTYQPLKDPITFETFEKIDLRVAQVLEAVKVPK-------SKKLLKLLVDVGFEKRTIVSGIALSYEPEQLVGKKVVIVANLAPATIMGIESQGMILAAS 659
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: L0AB28_CALLD (Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase n=2 Tax=Caldisphaera lagunensis TaxID=200415 RepID=L0AB28_CALLD)

HSP 1 Score: 66.2 bits (160), Expect = 1.260e-9
Identity = 36/103 (34.95%), Postives = 66/103 (64.08%), Query Frame = 2 
Query:  344 LKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSAS-NFSKKPM 649
            L++ +  S+F  +D+RVG ++ AEL+P+       SRK + L+VDLG E+R++++ ++     ED +GK V++ AN++ + + G  S+G +L+A     KKP+
Sbjct:    4 LEEKIDYSEFSKIDLRVGKVISAELVPN-------SRKLIKLIVDLGTEQRQILAGLQKWYKPEDFVGKFVVVVANLKSKIMGGLESQGMILAAPCGDDKKPV 99
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A1F8JXF2_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 TaxID=1797606 RepID=A0A1F8JXF2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.320e-9
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 2 
Query:  320 ENVEEVPTLKDPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASN 631
            EN++    LK+ +   DF  LD+RVG I+ AE +       + S K L + VD+G EKR++VS++      ED IGK V+I AN++   ++G  S+G +L+A N
Sbjct:  558 ENLKSFEKLKEEITYEDFSKLDLRVGKIISAEKV-------EKSNKLLKITVDIGFEKRQIVSSIAKTFKPEDLIGKKVIIVANLKTAKLMGIDSQGMILAAGN 654
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: A0A1G8X7N8_9EURY (Methionine--tRNA ligase n=1 Tax=Methanoculleus thermophilus TaxID=2200 RepID=A0A1G8X7N8_9EURY)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-9
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 2 
Query:  284 VMAISQAAVEEIENVEEVPTLKDP-VAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASN 631
            + A+     E +E  +E    K P V+I +F  LD+RVG IV AE I       K S+K   L+VDLG+EKR+VVS +      E+ +GK V + AN+    I G  SRG +L+A +
Sbjct:  537 IAALEAILNERVEKAKEAAKPKTPTVSIDEFAKLDIRVGQIVSAEPI-------KGSKKLYKLIVDLGSEKRQVVSGIAQFYSPEELVGKDVAMIANLAPAKIFGVESRGMILAAGD 646
[Close]
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Match: UPI001AE5ECDA (methionine--tRNA ligase n=1 Tax=Methanolinea mesophila TaxID=547055 RepID=UPI001AE5ECDA)

HSP 1 Score: 71.2 bits (173), Expect = 3.000e-9
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 2 
Query:  350 DPVAISDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTL 661
            + ++I DF  +D+R+G I+ AE IP        S+K L L+VDLG EKR++VS +      ED +G+ V + AN+   TI G  SRG +L+A + +   +P T+
Sbjct:  559 EEISIEDFCRMDIRIGKILKAEPIPK-------SKKLLRLIVDLGQEKRQIVSGIAQFYTPEDLVGQQVAVLANLAPATIFGVESRGMILAAGDTASLLVPLTV 655
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig660.17582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W1_ECTSI9.100e-7384.83tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A836CNH0_9STRA9.470e-5563.35tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A7S0MGA1_9CRYP8.020e-4256.94Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2K1L6P8_PHYPA5.970e-2140.83tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A9TWI9_PHYPA6.590e-2041.25Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2H0VUE8_9BACT1.000e-935.94Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
L0AB28_CALLD1.260e-934.95Protein containing C-terminal region/beta chain of... [more]
A0A1F8JXF2_9BACT1.320e-938.46Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
A0A1G8X7N8_9EURY2.280e-939.32Methionine--tRNA ligase n=1 Tax=Methanoculleus the... [more]
UPI001AE5ECDA3.000e-938.46methionine--tRNA ligase n=1 Tax=Methanolinea mesop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig660contigF-serratus_M_contig660:116291..125217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue1.1e-60
Seed eggNOG ortholog2880.D7G8W1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Putative tRNA binding domain
EggNOG OGs2D3XM@1,2ST4W@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-15_004450.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1757
Cds size657
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932026.9793367-UTR-F-serratus_M_contig660:116290..1173261622932026.9793367-UTR-F-serratus_M_contig660:116290..117326Fucus serratus maleUTRF-serratus_M_contig660 116291..117326 -
1690964109.3655627-UTR-F-serratus_M_contig660:116290..1173261690964109.3655627-UTR-F-serratus_M_contig660:116290..117326Fucus serratus maleUTRF-serratus_M_contig660 116291..117326 -
1622932027.1117373-UTR-F-serratus_M_contig660:125153..1252171622932027.1117373-UTR-F-serratus_M_contig660:125153..125217Fucus serratus maleUTRF-serratus_M_contig660 125154..125217 -
1690964109.4300544-UTR-F-serratus_M_contig660:125153..1252171690964109.4300544-UTR-F-serratus_M_contig660:125153..125217Fucus serratus maleUTRF-serratus_M_contig660 125154..125217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932027.0257587-CDS-F-serratus_M_contig660:117326..1175011622932027.0257587-CDS-F-serratus_M_contig660:117326..117501Fucus serratus maleCDSF-serratus_M_contig660 117327..117501 -
1690964109.3783958-CDS-F-serratus_M_contig660:117326..1175011690964109.3783958-CDS-F-serratus_M_contig660:117326..117501Fucus serratus maleCDSF-serratus_M_contig660 117327..117501 -
1622932027.0404015-CDS-F-serratus_M_contig660:118606..1187561622932027.0404015-CDS-F-serratus_M_contig660:118606..118756Fucus serratus maleCDSF-serratus_M_contig660 118607..118756 -
1690964109.388447-CDS-F-serratus_M_contig660:118606..1187561690964109.388447-CDS-F-serratus_M_contig660:118606..118756Fucus serratus maleCDSF-serratus_M_contig660 118607..118756 -
1622932027.0589414-CDS-F-serratus_M_contig660:119465..1195271622932027.0589414-CDS-F-serratus_M_contig660:119465..119527Fucus serratus maleCDSF-serratus_M_contig660 119466..119527 -
1690964109.3981764-CDS-F-serratus_M_contig660:119465..1195271690964109.3981764-CDS-F-serratus_M_contig660:119465..119527Fucus serratus maleCDSF-serratus_M_contig660 119466..119527 -
1622932027.0803392-CDS-F-serratus_M_contig660:120691..1209491622932027.0803392-CDS-F-serratus_M_contig660:120691..120949Fucus serratus maleCDSF-serratus_M_contig660 120692..120949 -
1690964109.408197-CDS-F-serratus_M_contig660:120691..1209491690964109.408197-CDS-F-serratus_M_contig660:120691..120949Fucus serratus maleCDSF-serratus_M_contig660 120692..120949 -
1622932027.0969307-CDS-F-serratus_M_contig660:125141..1251531622932027.0969307-CDS-F-serratus_M_contig660:125141..125153Fucus serratus maleCDSF-serratus_M_contig660 125142..125153 -
1690964109.4198086-CDS-F-serratus_M_contig660:125141..1251531690964109.4198086-CDS-F-serratus_M_contig660:125141..125153Fucus serratus maleCDSF-serratus_M_contig660 125142..125153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig660.17582.1prot_F-serratus_M_contig660.17582.1Fucus serratus malepolypeptideF-serratus_M_contig660 117327..125153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig660.17582.1

>prot_F-serratus_M_contig660.17582.1 ID=prot_F-serratus_M_contig660.17582.1|Name=mRNA_F-serratus_M_contig660.17582.1|organism=Fucus serratus male|type=polypeptide|length=219bp
MMKKISSGIAGVLSCTALFIGTALVTTSTICHAFTVLPRRPFEAPVAAAR
QRPGLHGSHGSRGLHFRERGGAPVMAISQAAVEEIENVEEVPTLKDPVAI
SDFEALDVRVGCIVVAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAV
RAIVDVEDAIGKSVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLR
TVLLGGGGVPPGSAISGL*
back to top

mRNA from alignment at F-serratus_M_contig660:116291..125217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig660.17582.1 ID=mRNA_F-serratus_M_contig660.17582.1|Name=mRNA_F-serratus_M_contig660.17582.1|organism=Fucus serratus male|type=mRNA|length=8927bp|location=Sequence derived from alignment at F-serratus_M_contig660:116291..125217- (Fucus serratus male)
ATACATACACGGGTATAACAGATAAGGCAGCTGCAAAGTCTTGACAGAGG
TGAAGAAAGGGCGGATGATGAAGAAGGTGAGAGCACCACTAAGAATAGGC
CTTGTTCGGTATCACTGATACAGTACACCGTTTGCCCACCCCCTAGGGTG
AGATATACTGTTGACACCTACCAGTACTTCTTTCTACTCCTATACAGTAT
ACTCTCTCTCTTTAATCGAAGTCTTCGCAACTTTTTTCATGTGTCATCGC
TGAGCTTTCATAGCCATTCGTACAAGGTACGCGTTCTGAGGCTCTGAATC
TGAGCATACCACTATTTTGAATCTCCTGCAGTATAGAGTGTGTAGATGTG
TACCAGTAGTGCCCATTTCGTGTAGTTTTACAAACACAGCAGCTTCTCTA
GTCTAGAGCTACTACTGTGGACAAGTAGTTATGTTTTCGATAATTTGGGA
AGCCAAACTCGATAATTTTTCTCGAAGTGCTAAATTTTGGTGTACTCACA
TGGAGATAAGTGTAATTGTACAGTAGTAATACCATGGGTCTCTTCCCGAT
ATTATACTAAGGTTACTATTTAAACCTACTGTTGTATTAGAGCATGCCTT
AAAAATCCTATTCGATGAATTTTCTCGAAGTGCTAAATTTTGGTGTACTC
ACATGAAGATAAGTGTAGTGACCATGGGTCTCTGTTACTAAATCGTCAAT
TGACTTTTGGTGCCCCTCCACTCAAAAACCTTATCGAAGATAATCCCTTG
ATCGCCGGATAATTGTAAGAGTGTTCCAAGGACTGATTACCGATACGTAA
TCATCAATTGACTTTTACCCTGTGGTAAAATAGCTTACCTTATCACATCT
CTCCCCGATATTATACGAAGTCAATGATTTTTTTTGGGGTACTTCTGTAA
TTAGTCTTATCCTTCTACTCTCCAATCTCACAACTTGACCATCCGGCGCA
CAAGCAGACAAAGATTAGTAATACCTGTACATTAGGTTGGTTCGATAAGG
TTTAGAGTAGATATGTATGTCGTCACTAATACAGAAGCGGAAAATGGATC
AACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAAA
ATATTTTTCCCTGTCCCCGTTCGCGCGTGAGAATTTAGTCTCGCGAGACA
GGTTCGGCCGTTTATTCTTGACACTTGAGCTGAACTCCCGCTTTCCGCGG
TGGCGTCCATTGGTCCATTTATTCATACCGCTAACCGCCTTCGGGTCAGT
CTCGACTCTATGAGGTCATGCAATTGCGTACTGATGGCGTTAACTGCCGA
GAGTCCGCCGACACTGGGTCAGTAGTCCTCAAGGTAGTTCCAGTAACGGG
TGCTGCCTTTTCACGTCATCACCACGGACTTTTTTTTTGTGCGGCTCTAT
CTCCCCCATACCCACTTTTGTATTTTTTTAAAGAAAATACAGAACGCACC
TAGACCTTCTGAGCATGCCCCAGTCAGGGGGGAAAAATGTCAAAATGTTC
AGGTCGGCTTAAAGGCTGCAAATACAAAACCTCTTCATGGCATTCAAACG
GGTTTATATGGCATGTAGTAAACTTTTGGAAAAATGAAAATATCAAATAT
CAGAGTTTTAAAAATCAAACAAGGTTCTTGGGTTCAAACTTTAGATTACA
AAATTATGTGTATCGTCATGATACGAGAAAAAATATGAACGCAGCAAAAC
CTCCTGAGTAACCAAAAGATTTAAGTGGGAACATTGGCTGTAAGAACAAA
AACTCTTCATGGCATATTGAAAGGGTTAGCTTCACATCATCCACGATGCA
GTCTCAGCGGGATCCAGTCCAGTTGAACGCTACAGTCTAGTAGTAATGTT
TAAAAAAATCAGAACAGCACCTAGACCTTTTGAGCATCCCCCGGTAAGAG
GGGAAAAAATGTCAAAACGTTCAGGTGGGATCAAAGGCTGTAAGTACAAA
ATCTCTTTTTGTGAGGTTACAATTAATGAATGCCCTCGTCGCCCGAGTGG
TCTATAAAAATAGTTACAGTATAATAGTAGGCTGTTTGCTCATCTGCTAT
TACTAGTGCGGAAGTCGTGAGTTCGATTCTTGCCAAATCAGAATTTGTGT
ATTTTCTTTCGTAACGGAACGCGTGAGAACGTGTGTAAGTAAAATTCAAC
CGTTGGTTGACGAGTTGGAAGAGTGCTGAACTTGCATGGCGATATAAATT
CGTAAGGCGTGAACCGGGGAGAGATGGAAAGATCCTCATTGACCACAGGC
AGGATGGTAACGTTGAGGCCCATCGGCTATACTATTTATAAGTGAACTGA
AAATAAAAAATAAAAAGAGTTAATAGACCTAAAAGGCAGTTGACAATCAC
CACAAGGTCGCATCCTCTATGGTTCCTTCATGTCACCGTATTTTCAACAT
GTCCATTTCATATCACTACAGTAGTGGGTGTGGGAAAGATAAGCGCATAT
TAATTAGTTCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACTGCCTT
GAGGTTTACTGACCCTGTGCCGGTGGACTCTCGGCAGTGAACGCGATCGG
TACGCAATTGCCCTGACCCGATAAACTCGAGACTGACCCGTTGGTGGTTG
GCGGTTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCC
CGCAAGGAAGCACCATATTCAGCCTGAGTATGGAGATGGGCAGGCTGGCG
CGGGACGGGACTGCCGAATCCGTCTCGCGAGACTGAATTCTCTGCCGTCA
CGTTTCGACCCAATTTTCCCCTCGGGTGGCGTGGACACTCGAAAGATTTA
GATGCGTTCATATTTTTCTCTAGACAGTAGATCAATCTTCCTCTGTATTC
TCAACTTATTAATAGCAGTATGTGTAGGATAGCGTTCGCTGGGGAGCTCG
TGGTGAGGGGCCAAACCTTCGAGCGGGATCCAGAAATGCAACGAGACAAG
CTTGAAGCGAGTTTTGGAAAACGGCACGGCTTGTGGCGCGGCCGGTTCGG
GGCTCGGGGCTGGTCCTTTAGGGGTGAAGCAGTAATAGACAAGGTGTTCG
AAGTGTACCCAGGAGGCGTTATTTCCAAACTTTGAGACCTGAGTTCCAAA
CTTTCCGAAACTTCGGAAGGGTTTTCCTGACTTAGGAGCGTTTTCAGAGA
GGCTTTTTTATCTGGAAATTTGGAAAAGTTTGGAAGTTATTTACTCGGTT
AGACCGACCGACCTTTACCGTGCCACGATAAGTGTTGAGGAATAGCGTTG
TGAGTTGTTGATCAGTATCTAGATTTTATTTCTCACATGAATTTCGCTGG
ATCTACTGTACACTCACTGCTTGTGGTAAAAGTTTTCAATCGGATTCGCT
TTTTTTTTAATAGAAGCCGTAACTTGTGCGCCCAGTAGTTCAACCGCTGC
ATCACAAGCTTGACACATGTATGTTTGTGTAGTCATCACATGCAGCAGAC
TAGGCATCAACCGGTGTGGTTGCCAATCCTGCTCTCAATGCTCTCACTTA
TTTCAATCGTCTCGAAAGCGCGATTGAAGGAGATATGATCGGGTAGTCTG
ATCTTACATTATGCCCGGATTAGGCGAAGTTCATAGATCTAAGTGGATCT
GAATACGTCATTCCCATGCTCTGCCGGAAGAAGGCTCCCTCGCTTTTCAT
TATTTTTTCTTTCTTTTTTCTTTCATCTCACTTATAGTCGATGGGCCTCA
TTCCATCCTGCCTGTGGTCACTAAGGATCTTCCCGTCTCTCCCCGGTTCA
CGCCTTACGAATTTTTATCGCGATGCAAGTTCAGTACTCTTACAACTCGT
CAACCAATGGTTGAATTTTACCTACTCACGTTCTCACGCTTTCCGCTACG
GAAGCAAGAATTAAAATCCTGATTTAAGCAAGAATCGAACTCACGACCTC
CGCACTAGCAGGTGTACAGGTTACCTACTAGACCACTCGGGCGACCTTCG
CCTAAAAAAGCGGGGTTGGATACTATTGTAAAAATTATATGAATAATGAC
ACTATTCATTAATAGTAGCAGGCAACTGCAGGGTATAATCGCATCTTCAG
AAAACCAATACCAGGTGTGCCGATAACGGCACTATTATAGAAATAACGGC
AAGGTTTCTACTTATACGAGCATCTTGTGATGGGGATAGGGGATATCCGG
TAGGCCACGGGGCAAAAGCCAACCGGCAATGGCAGCAGGGCAACTGGTCC
TCATGGTACTCTCCCCACTCTACGTTTTCCTCAGCCCATGCACCCTCCTG
CCCCATCTCCCTCCGTAGATATCTTCGGGGATTGCAGGCGTCTTGTCTTG
CACGGCCCTGTTCATAGGCACCGCACTCGTGACCACGTCCACCATCTGCC
ATGCCTTTACGGTCTTGCCAAGACGACCGTTTGAGGCTCCAGTCGCCGCG
GCACGCCAACGACCCGGCTTACACGGGTCACACGGGTCGCGTGGTCTTCA
CTTCCGTGAAAGGGGGGGAGCACCGGTGATGGCCATATCCCAAGCAGCAG
TGGAAGAAATAGAGAACGTGGAAGAGGTGAGTTTCGAACAACGTGTGCCC
ACCCCACGTGAACAGCATCACAACATCGCCGTCATAGAGCTCTTCTGTTT
TCACGCGTCGCCCTAGATGAGCTTGCCGAAGAAAACTTCCTGCTGAGAGA
AATCATTGCAGATCAGTGCGTTACTAGTCTCCCTACTACTGTCTTGTGAA
AAAAAGGGTTGCGTGTTCGGGTGGTTGCAGCGTTTTCGTGGTAGCTTTCG
GAGTTTTCGGAGAAGCGTACTCGTGAGAGTTCACCCGGGTTATGGTTGAT
CAATCGACGGGCCGTTAAGCAATGGGGCAGTACGGGTCGGTACACTGCAT
AACAGCTGTGTAGCACCATTCCTCGTTGTGGCGTATGCTAGCGGACTTTC
GGGGGTTGCTCGCCCGCGCGGCTTCAATCTCGCGCCTGTCCCTCCTGATG
GCTCTGCCGTGCTTGTTGCCATTCCATCGAGCGGATGCCGACTGATGCCG
AGCGTGGCGTTATTTTAAGACTGGGACGTCGTATTGATACGTACATGTAT
CTAACTTAATTGCGTTTTTGCGCATTATGTGGTAATTTATAGGGCAAGCT
GACGTTTTACGTCCGTCACCACCGAGTGCTAACGTGCGTGTCGGTGCAGG
TGTTTTAAGACGACGGCTGTTTAACGTGATATCTTCACATTTCTCAACCG
ATAAGAACCGAGTGCGTGTGTAGGCAGGCTGGCCTTTTGCCTCACGCTCG
GACACTCTACGCAGCTCATCTCGCCCCCTTGTACGTTACGAAACCCTCTT
GGGACGCGGCCTTTTGAGCTTTATCAAAAGGGGAAATCCTGCTCCGCCGA
GGCTCGCCTTTTGTACATTAAATAGTATATAATGGTGAGAACCGTTCAGG
GTAACTATTAATACCATAAGGTGTTCCTCGAAAATCGGTGGAGCCCAGCA
ATATCAGCGAGAAACTGTATGCCATTGAAGCCATACACGCTATCCAGACA
GTAAGCAACACCATAACTGCACCGACGGTACTTTGACTCGGCAGTCGGCG
TAAGCGTAGCCATGCGTTGTAAAGTACTACGGAGTGTATGCAAATAGAAT
AATACTTAAAAACAGTACCTACCGTATATTTTATTTGCTTGAGCGTGGAA
CTGAGCGACACAAGAGGTTTTGACTCGCTTTTGGCCGCAGGTGCCGACAT
TGAAGGACCCTGTGGCCATCTCGGACTTCGAGGCCCTCGACGTGCGAGTG
GGGTGAGTTGCTGGCGCGTCGTACGGAGCGTGTAGTACCTCGATATAAGA
TGCTCAGATGCGGTGATGCAATAGAAGAACGGACGTTCGAGGGCATCCGA
AAACATTACTAACGGCCGTGAAGAACAAGGAAGGATAAGATCACGCGGTA
GTTGAGCGACCACACAGATTTACGGTACGAGCGAAGCAGTCGATCCATTT
TTGTAGAATTTAATCTTCGCTGAAGCCTTTTTAGAACGAGTTTCGCGAAT
ATGCCTCCCCTCCTTCCCTGTTTTACCTAGAACGGAACATCCTACATAGT
TATTGGAAACCCCACACGTGGCGGCGTTGGAACGATCTTTTATCTCTCTT
AGGATTTACAAGTACCTCGTATTTACTTCAACTGCCATCTCCTCACGCTC
ACAAATACATGGAGTCGGGGAGGGGGGGGGGGGAGGGGCGCTTCCAGAGG
GTTTTACGTCACCACTTTTTTTTTGGCTTAATCATGGCTAGCTCTAGACC
CATGCTTGGTCTTTCACATACTATTTGCCGTTCGGCTGGCATTGACGAGT
CCTTAGCGAGGGGAAAAGACGTGTCACCAGTCACCGTGATTCTCCCGTTA
CGTGTAAGCGGCAGAGCGCCCGCCATCTTGCCAAGCGTTTTGTCCCGACG
GTATTTTATGCAATAGTTTGTACCGTACTTGAGCATTTTCCCTCCTCTTG
GGCTTGAACAGATGCATCGTCGTAGCGGAGTTGATACCCGACCCGGAGCA
CGACAATAAGCCGAGCCGCAAGTACTTGTCCCTGGTGGTAGATCTCGGCA
ACGAGAAGCGGCGGGTCGTCAGCGCGGTTCGAGCGATCGTCGACGTCGAA
GACGCAATAGGGTAAGTTTATCATTGCAGTTTCGTGATAATAATCGCCTC
CGTTATACCTGTACTCCTTTCTGTATCTCTATTGTCCATTACATACCAAT
AATTGTATAGTGGGCGTGAAAAAAGAGAGGCGCGTGGCGATTGATCCGTG
GTGTTGATTACAAAGGCAGCACCCGTTACTCGAACTGCGTTGAGGGCTAC
TGGCCCTGCGCCGGCGGCCTCTCGGCAGTGAACGCCATCGGTACGCAATT
GTGCGGCCTGATAAACCCGGACTGACCCGATGGCGGGGAACTATATAAAT
AAATGGATGCCGTCGTGGAAAGCGGGAGAAATCCCGTGAGTATGCACCAG
ATTCATCCCGAGCGTGGAGAATAAGCGGGCTGACGCAGGACGGAACGACT
GAACTCGTGTCGCGAGATCAAATTCTCAGGCGCGAACGGGGACAGAGAAG
AAATCATTTTCCCTGTTCAGTTGACCCCGGAGCAGATTGGCAACCATGTC
CGGCTCATCCATTCTCTGGTACATATAATAGATAATAATTACATGATACT
ACTGTATATTATGCTGAGGCTCATAGGCTATATAAGTGAGATGAAAAAAA
AAAAATGGTTGTTTTTTCTGTTTCCCTTTCTGGCAACGATGTTCTTCGCC
GGCTACTTTTCTTGTCCGTTTCCGTTTTTCTGCTTTCCCTGTTTTTTTTC
TCCGACCGTGTTCCCGGTTTGGTTTAGTTTGGTTCCGTCCATCTTGTGAC
CCAACGGCTGGATTCGTAGCGGATCAGTCAATGCGAGGTAGACAACAACA
ACCTAGCACACCCTAATGAAGAGCGAATGTATCAAATAAGACTCGTGCTG
TGAATGTTTCTGTAATATCTTTGATTATATTGTGGAATCACGACCGACCA
CAATCGTGGGCAGTCCGACCCGTCCGCTGAAACGCACCAGAAGGTAACAC
GCTTTTCGTTCCCTTGGTACAGCTCCAAATAAGATGCGTCAGAATGCCTT
CCCAACGTTGTCACGATTCGCCTGACCATCTCCTTCAACCGCGCTTTTGC
CGTCCTTTACACGTCCTCCTGCGCCTCCCTGCTCTCAAACGGCATAATCA
ACACTTTCGCACCAAGGAAATCGGTGCTAATAGCGGCAAACGTCGAAGAG
GAGACGATTTTGGGGCGACCGAGCCGGGGTCGATTGCTCTCGGCCTCCAA
CTTTAGCAAGAAACCCATGCCCAGAACATTGCGCACGGTGCTGCTGGGAG
GAGGAGGGGTGCCCCCCGGCAGTGCGATCTCTGGGTTGTGAACACCGTCT
CAAGTCGGCGCTCACGCAAATACTGTGCACGGCCTGAAGGTGTCTCGGTG
CTCTGCCCCCTGAAGACATTTTATTCAACAACCCTCCTCCCTTAAGGCAT
CCACGTATAGTATACTTCTCCACGAGCTCGTCAAGTCAACAGCACCGCTC
CGTACTCCCAATAGCCGAAACCCCGCTCTAATCGCGGGGAACTCGATAAG
CAGGCAGCCGTACCCCTCACAATGAAGGGATACTGTAGGTGGGAGGGGGG
GGAAAGGTCAGAGTTTTAAGAGTTGTAAGCCGTGGGGCGACATCTGCGGC
TGGCTCGTAGGTTTTTAGCAATGACCGAGGCGGTTTTCTTTCACGCACGA
GAAAAAAAGCGTGAGTGAAAGAAGGGGCCTCGCCGAAGGGTAAATTGATT
CTCAAATGCCTCGCACTTTCATTTCTCTATTAATAGTATGGAGGTCGAGA
GGACTCTGCCGAGGCGGTTACACTATTATTTGTGCGTGACTTTTATCAGC
ATAACGCCATGCCGGGAGGCTAATCTCGGAGCTGCCGCAGGATCCAATGC
CGTGACACAGAATGAAGCTATCCAATATTCTTGCAGATAAATCGGTTTGC
CTGATGGATTGCCCAACATTGGGGCATATGGTTTTGCGTGGCATTTACCG
GAGGCTTGCTTTTTGTTTAGCGGCTTAAAACCTCAGATGTTTTCTCCGTA
TCAGTTCGCCATCTCCGCCCGCCTTCTCTTTATGTTTGCTTTCCACGCGG
AGAACCCGGCCAAGTAGCGTTCGTAGCAGGCAAATCTTTGGTGTGATGGG
ACAGGTGTTTTCGACTTTAAATAGGCGGTAAAAAGAGGGGAAAAGGAGGG
GAGGAAAGGAAAGGGAGGGAAGGAGAGAGAGCGAAAGCGGGGCTTACATT
TTTCACTCGTCTGTACCCTGTATAGCCTCGAATCGGCCAAACTAAAGCAC
GGCAGAAATCCCACCGCATAGACATGCGTTTTGTTCCGTTGCTGTTGCGT
TGGGGGTACTCTATAACGTGGGTATGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig660:116291..125217-

>mRNA_F-serratus_M_contig660.17582.1 ID=mRNA_F-serratus_M_contig660.17582.1|Name=mRNA_F-serratus_M_contig660.17582.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig660:116291..125217- (Fucus serratus male)
ATGATGAAGAAGATGATGAAGAAGATATCTTCGGGGATTGCAGGCGTCTT
GTCTTGCACGGCCCTGTTCATAGGCACCGCACTCGTGACCACGTCCACCA
TCTGCCATGCCTTTACGGTCTTGCCAAGACGACCGTTTGAGGCTCCAGTC
GCCGCGGCACGCCAACGACCCGGCTTACACGGGTCACACGGGTCGCGTGG
TCTTCACTTCCGTGAAAGGGGGGGAGCACCGGTGATGGCCATATCCCAAG
CAGCAGTGGAAGAAATAGAGAACGTGGAAGAGATATCTTCGGGGATTGCA
GGCGTCTTGTCTTGCACGGCCCTGTTCATAGGCACCGCACTCGTGACCAC
GTCCACCATCTGCCATGCCTTTACGGTCTTGCCAAGACGACCGTTTGAGG
CTCCAGTCGCCGCGGCACGCCAACGACCCGGCTTACACGGGTCACACGGG
TCGCGTGGTCTTCACTTCCGTGAAAGGGGGGGAGCACCGGTGATGGCCAT
ATCCCAAGCAGCAGTGGAAGAAATAGAGAACGTGGAAGAGGTGCCGACAT
TGAAGGACCCTGTGGCCATCTCGGACTTCGAGGCCCTCGACGTGCGAGTG
GGGTGCCGACATTGAAGGACCCTGTGGCCATCTCGGACTTCGAGGCCCTC
GACGTGCGAGTGGGATGCATCGTCGTAGCGGAGTTGATACCCGACCCGGA
GCACGACAATAAGCCGAGCCGCAAGTACTTGTCCCTGGTGGTAGATCTCG
GCAACGAGAAGCGGCGGGTCGTCAGCGCGGTTCGAGCGATCGTCGACGTC
GAAGACGCAATAGGATGCATCGTCGTAGCGGAGTTGATACCCGACCCGGA
GCACGACAATAAGCCGAGCCGCAAGTACTTGTCCCTGGTGGTAGATCTCG
GCAACGAGAAGCGGCGGGTCGTCAGCGCGGTTCGAGCGATCGTCGACGTC
GAAGACGCAATAGGGAAATCGGTGCTAATAGCGGCAAACGTCGAAGAGGA
GACGATTTTGGGGCGACCGAGCCGGGGTCGATTGCTCTCGGCCTCCAACT
TTAGCAAGAAACCCATGCCCAGAACATTGCGCACGGTGCTGCTGGGAGGA
GGAGGGGTGCCCCCCGGCAGTGCGATCTCTGGGTTGTGAGAAATCGGTGC
TAATAGCGGCAAACGTCGAAGAGGAGACGATTTTGGGGCGACCGAGCCGG
GGTCGATTGCTCTCGGCCTCCAACTTTAGCAAGAAACCCATGCCCAGAAC
ATTGCGCACGGTGCTGCTGGGAGGAGGAGGGGTGCCCCCCGGCAGTGCGA
TCTCTGGGTTGTGA
back to top