mRNA_F-serratus_M_contig660.17581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig660.17581.1
Unique NamemRNA_F-serratus_M_contig660.17581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI0001A836C9 (ATP-dependent DNA helicase PIF1 n=2 Tax=Sorghum bicolor TaxID=4558 RepID=UPI0001A836C9)

HSP 1 Score: 122 bits (305), Expect = 2.820e-28
Identity = 86/236 (36.44%), Postives = 126/236 (53.39%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +RIG G E  N  GE+ LP     P       L  +   IFP   A+MS  S    R I++PR   V ++N +++ R  G      S D+     H+   S  LN++TP G+P H   LK+G P+ILLR  +P  G+ N TRL+       +++A +    +      +PRI +  S++E+  F  K+ QF + L++A+ INK QGQTL  VG++LP P FSHGQL+
Sbjct:   23 PWFAEYL--LRIGGGLEEANGDGEIRLPDEICIPHTREDSDLDTLIDCIFPALNANMSNKSYITSRAILSPRNDWVDMVNMKMISRFQGNEMVYHSFDSAVDDPHNYCPSEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPAGGLCNGTRLVVRGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 256          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B4260EA (ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4260EA)

HSP 1 Score: 120 bits (302), Expect = 5.380e-28
Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPL----GDVKTTI---FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +RIG G+E  N +GE+ LP     P     GD+   I   FP   A+MS  S    R I++ R   V ++N +++ R  G      S D+     H+   S  LN++TP G+P H   LK+G PIILLR  +P  G+ N TRL+       +++A +    +      +PRI +  S++E+  F  K+ QF + L++A+ INK QGQTL  VG++LP P FSHGQL+
Sbjct:    7 PWFAEYL--LRIGGGSEEANCNGEIHLPDDICIPQNGKDGDLDMLIDCIFPALNANMSDKSYITSRAILSARNDSVDMINMKMISRFQGDEMVYHSFDSAVDDPHNHYPSEFLNTLTPNGLPPHVLKLKIGCPIILLRNIDPAGGLCNGTRLVVQGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 240          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A815VZ45_ADIRI (ATP-dependent DNA helicase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815VZ45_ADIRI)

HSP 1 Score: 124 bits (312), Expect = 2.300e-27
Identity = 86/223 (38.57%), Postives = 124/223 (55.61%), Query Frame = 2
Query:  536 WHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTIFPYEASMSR-PS--GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTG------GPGHSSAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI---LLNATLQ-ESIYG--------IPRIVINSSEEELMFSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            W +++G+G    N + E++LP       G++   IF  E S+   P+   RTI+ P+  H  L+N E+L+RLSG      SID  G         + +  LNS+TP+GMP H+  LK+GA ++LLR  +    + N  RLI   L N T+  E + G        IPRI +  S+  L F L++ QF V L++A+ INK QGQT D +G+ LP P FSHGQL+
Sbjct:  769 WLIKLGNGELISNGNDEIELPSSCIL-NGNLVDEIFGREISIEDIPTLCNRTILCPKNEHSLLVNEEVLQRLSGMEKLYTSIDEVGCEDGEDATNYPTEFLNSLTPSGMPPHKLKLKIGAIVMLLRNLDVSQDLCNGIRLIVRRLQNYTIDCEVVTGSNKGNRVLIPRITLTPSDAFLPFKLRRHQFPVRLSFAMTINKSQGQTFDRLGLLLPQPVFSHGQLY 990          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A6P6VHP9_COFAR (ATP-dependent DNA helicase n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6VHP9_COFAR)

HSP 1 Score: 121 bits (304), Expect = 7.820e-27
Identity = 87/236 (36.86%), Postives = 121/236 (51.27%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTI-----------FPYEASMSRPSGRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHSSA---ILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILLN-------ATLQESIY-----GIPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P+ +  L  ++IGDG E      ++ LP     P  D  T++           F +  S S  + R I++     V+ +N  +++R  G  T  LS D T  P   +     LNSI P G+P HE  LK   P+ILLR  NP  G+ N TRLI LN       A +   I+      IPRI ++SS +E      K+ QF ++L +A+ INK QGQTLD+VGI+L  P FSHGQL+
Sbjct:  234 PSFSDFL--LKIGDGTEPTILDNKIKLPSSMLIPFIDDTTSLNLLINTVYPSLFDFLTSSSAVANRAILSTTNETVQEVNQILIQRFPGQETRYLSFDQTLDPTKQADHGDFLNSIQPPGLPPHELILKPMCPVILLRNLNPAQGLCNGTRLICLNFDKNIIHAEISVGIHIGKHVFIPRIPLHSSNDESYPIPFKRTQFPISLCFAMTINKSQGQTLDFVGIYLKEPVFSHGQLY 467          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B4237C8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4237C8)

HSP 1 Score: 120 bits (302), Expect = 1.880e-26
Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPL----GDVKTTI---FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +RIG G+E  N +GE+ LP     P     GD+   I   FP   A+MS  S    R I++ R   V ++N +++ R  G      S D+     H+   S  LN++TP G+P H   LK+G PIILLR  +P  G+ N TRL+       +++A +    +      +PRI +  S++E+  F  K+ QF + L++A+ INK QGQTL  VG++LP P FSHGQL+
Sbjct:  265 PWFAEYL--LRIGGGSEEANCNGEIHLPDDICIPQNGKDGDLDMLIDCIFPALNANMSDKSYITSRAILSARNDSVDMINMKMISRFQGDEMVYHSFDSVVDDPHNHYPSEFLNTLTPNGLPPHVLKLKIGCPIILLRNIDPAGGLCNGTRLVVRGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 498          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI001247475E (uncharacterized protein LOC115984536 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001247475E)

HSP 1 Score: 121 bits (304), Expect = 2.060e-26
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 FFFDSSSGTGKTFLYTTLIAAVRSQGKTALAVASSGVTCTPLPGGRTAYYSQFEIPIRVSADEASYLDRHRKLTELPHRRDAICWGEVPMAYG*NHEVVERTLASFMSNNLPWGGNKIIVMEEDFRKVIPVVHRSMHG*VFDACLKCSPL 450
            FF D   GTGKTFLY T++AA+R  G  A+A A+SG+  T LPGGRTA+ S+F+IP+ + A     + +   L EL  R   I W E PM      E ++RT    M  NLP+GG K++++  DFR+V+PVV +     + DAC+  SPL
Sbjct:  130 FFVDGPGGTGKTFLYRTILAALRKAGHIAIATATSGIAATLLPGGRTAH-SRFKIPLTLDASSTCSISKQSDLAELIRRATIIIWDEAPMVNQRALESLDRTFRDIMEVNLPFGG-KVLILGGDFRQVLPVVPKGTKAKMIDACIVKSPL 277          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B42688F (uncharacterized protein LOC8076113 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B42688F)

HSP 1 Score: 121 bits (304), Expect = 2.550e-26
Identity = 88/236 (37.29%), Postives = 126/236 (53.39%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +RIG G+E  N +GEV LP     P       L  +   IFP   A+MS  S    R I++ R   V ++N +++ R  G      S D+     H+   S  LN++TP G+P H   LK+G P+ILLR  +P  G+ N TRL++     N    E + G        +PRI +  S++E+  F  K+ QF + L++A+ INK QGQTL  VG++LP P FSHGQL+
Sbjct:  963 PWFAEYL--LRIGGGSEETNCNGEVHLPDDICIPQTEKDSDLDTLIDCIFPALNANMSNKSYITSRAILSSRNDWVDMINMKMISRFQGNEMVYHSFDSAVDDPHNYYPSEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPAGGLCNGTRLVVRGFQRNIVDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 1196          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI00052FF883 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FF883)

HSP 1 Score: 116 bits (291), Expect = 2.700e-26
Identity = 84/236 (35.59%), Postives = 123/236 (52.12%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTI-------FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A  L  +R+ +G E  NE G + LP     P  D ++ I       FP    SM+ P+    R I++ +   V  +N +++ER +G      S D+     H    S  LN +TP G+P H   LK+  PIILLR  +P  G+ N  RLI+     NA   E + G        +PRI +  S++++  F  K+ QF V L++A+ INK QGQT+  VG++LP+P FSHGQL+
Sbjct:   16 PWFAAFL--LRVSNGTEEANEEGNIKLPEDVCVPSTDKESDIERLIDHVFPALNTSMADPNYITSRAILSTKNDCVDKINMQMIERFNGEEMVYHSFDSAEDDPHGYYPSEFLNLLTPNGLPPHVLKLKINCPIILLRNIDPVNGLCNGRRLIVRGFQRNAIDAEIVVGQQHGKRVFLPRIPLCPSDDDMFPFLFKRKQFPVRLSFAMTINKAQGQTIPIVGVYLPNPVFSHGQLY 249          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A1D6NZH8_MAIZE (ATP-dependent DNA helicase n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6NZH8_MAIZE)

HSP 1 Score: 121 bits (304), Expect = 2.770e-26
Identity = 83/236 (35.17%), Postives = 127/236 (53.81%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +R+GDG E  N  G++ LP     P       L ++   +FP    +MS  +    R I++ R   V ++NA++++R  G      S D+     H+      LN++TP G+P H   LK+G P+ILLR  +P  G+ N TRL++     N+   E + G        +PRI +  S+EE+  F  K+ QF V L++A+ +NK QGQT+  VG++LP P FSHGQL+
Sbjct: 1443 PWFAEYL--LRVGDGTEDTNSDGDICLPDEVCVPYSGSDSDLDNLIDFVFPNLNENMSDSTYITSRAILSTRNDWVDMINAKMIDRFQGEHMVYHSFDSAMDDPHNYYPPEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPANGLCNGTRLVIRGFQRNSIDAEIVLGQHAGKRIFLPRIPLCPSDEEMFPFQFKRKQFPVRLSFAMTVNKAQGQTIPNVGVYLPEPVFSHGQLY 1676          
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A1D6HJR0_MAIZE (ATP-dependent DNA helicase n=4 Tax=Zea mays TaxID=4577 RepID=A0A1D6HJR0_MAIZE)

HSP 1 Score: 121 bits (304), Expect = 2.820e-26
Identity = 83/236 (35.17%), Postives = 129/236 (54.66%), Query Frame = 2
Query:  515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
            P  A+ L  +R+G+G E  N  G++ LP     P       L ++   +FP    +MS  +    R I++ R   V ++NA+++ER  G      S D+     H+      LN++TP G+P H   LK+G P+ILLR  +P  G+ N TRL++     N+   E + G        +PRI +  S+EE+  F  K+ QF+V L++A+++NK QGQT+  VG++LP P FSHGQL+
Sbjct: 1502 PWFAEYL--LRLGNGTEDTNSDGDICLPDEVCVPYSGSDSDLDNLIDFVFPNLNENMSDSTYITSRAILSTRNDWVDMINAKMIERFQGEHMVYHSFDSAMDDPHNYYPPEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPANGLCNGTRLVVRGFQRNSIDAEIVLGQHAGKRIFLPRIPLCPSDEEMFPFQFKRKQFTVRLSFAMMVNKAQGQTIPNVGVYLPEPVFSHGQLY 1735          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0001A836C92.820e-2836.44ATP-dependent DNA helicase PIF1 n=2 Tax=Sorghum bi... [more]
UPI000B4260EA5.380e-2836.86ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorgh... [more]
A0A815VZ45_ADIRI2.300e-2738.57ATP-dependent DNA helicase n=2 Tax=Adineta ricciae... [more]
A0A6P6VHP9_COFAR7.820e-2736.86ATP-dependent DNA helicase n=3 Tax=Coffea TaxID=13... [more]
UPI000B4237C81.880e-2636.86ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorgh... [more]
UPI001247475E2.060e-2644.00uncharacterized protein LOC115984536 n=1 Tax=Querc... [more]
UPI000B42688F2.550e-2637.29uncharacterized protein LOC8076113 n=1 Tax=Sorghum... [more]
UPI00052FF8832.700e-2635.59ATP-dependent DNA helicase PIF6-like n=1 Tax=Brach... [more]
A0A1D6NZH8_MAIZE2.770e-2635.17ATP-dependent DNA helicase n=3 Tax=Zea mays TaxID=... [more]
A0A1D6HJR0_MAIZE2.820e-2635.17ATP-dependent DNA helicase n=4 Tax=Zea mays TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig660contigF-serratus_M_contig660:111377..112572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.0
Seed ortholog evalue9.3e-26
Seed eggNOG ortholog4558.Sb02g036600.1
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GMSB@35493,3M24Q@4447,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Exons3
Model size1141
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig660.17581.1prot_F-serratus_M_contig660.17581.1Fucus serratus malepolypeptideF-serratus_M_contig660 111801..112572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932026.872275-UTR-F-serratus_M_contig660:111376..1118001622932026.872275-UTR-F-serratus_M_contig660:111376..111800Fucus serratus maleUTRF-serratus_M_contig660 111377..111800 +
1690964109.3045478-UTR-F-serratus_M_contig660:111376..1118001690964109.3045478-UTR-F-serratus_M_contig660:111376..111800Fucus serratus maleUTRF-serratus_M_contig660 111377..111800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932026.8897986-CDS-F-serratus_M_contig660:111800..1121811622932026.8897986-CDS-F-serratus_M_contig660:111800..112181Fucus serratus maleCDSF-serratus_M_contig660 111801..112181 +
1690964109.3190248-CDS-F-serratus_M_contig660:111800..1121811690964109.3190248-CDS-F-serratus_M_contig660:111800..112181Fucus serratus maleCDSF-serratus_M_contig660 111801..112181 +
1622932026.9075947-CDS-F-serratus_M_contig660:112195..1123381622932026.9075947-CDS-F-serratus_M_contig660:112195..112338Fucus serratus maleCDSF-serratus_M_contig660 112196..112338 +
1690964109.3304036-CDS-F-serratus_M_contig660:112195..1123381690964109.3304036-CDS-F-serratus_M_contig660:112195..112338Fucus serratus maleCDSF-serratus_M_contig660 112196..112338 +
1622932026.9241703-CDS-F-serratus_M_contig660:112379..1125721622932026.9241703-CDS-F-serratus_M_contig660:112379..112572Fucus serratus maleCDSF-serratus_M_contig660 112380..112572 +
1690964109.3482132-CDS-F-serratus_M_contig660:112379..1125721690964109.3482132-CDS-F-serratus_M_contig660:112379..112572Fucus serratus maleCDSF-serratus_M_contig660 112380..112572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig660.17581.1

>prot_F-serratus_M_contig660.17581.1 ID=prot_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MRASSVLLSLRNGRRLSTHHQHGGRGGGRQPALAKLLWHMRIGDGNEAQN
EHGEVDLPGYFFPPLGDVKTTIFPYEASMSRPSGRTIVAPRIHHVRLLNA
EILERLSGPGTPSLSIDTTGGPGHSSAILNSITPTGMPTHEFPLKVGAPI
ILLRTTNPYYGMFNSTRLILLNATLQESIYGIPRIVINSSEEELMFSLKK
IQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF
back to top

mRNA from alignment at F-serratus_M_contig660:111377..112572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig660.17581.1 ID=mRNA_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=mRNA|length=1196bp|location=Sequence derived from alignment at F-serratus_M_contig660:111377..112572+ (Fucus serratus male)
TTCTTCTTCGACAGTTCCAGTGGCACGGGGAAGACGTTCCTATACACGAC GCTTATTGCCGCCGTCCGTAGTCAAGGAAAAACTGCACTTGCCGTGGCGT CTAGCGGGGTTACCTGCACCCCGCTACCAGGCGGGCGCACAGCGTATTAC TCGCAGTTCGAGATTCCCATCCGCGTCAGCGCGGATGAGGCATCCTACTT GGACAGACATCGCAAACTTACCGAGCTCCCCCACCGTAGGGACGCCATCT GCTGGGGTGAGGTGCCAATGGCCTACGGGTAAAATCACGAGGTCGTCGAA CGAACGCTCGCCAGTTTCATGAGCAATAACTTACCTTGGGGAGGCAATAA GATCATCGTGATGGAGGAGGACTTTCGGAAGGTTATTCCGGTTGTTCACC GGAGCATGCACGGGTAGGTCTTTGATGCGTGCCTCAAGTGTTCTCCTCTC TCTGAGAAATGGTCGTCGTCTTTCGACTCATCATCAACATGGGGGTCGTG GCGGCGGCCGGCAGCCAGCGCTTGCGAAACTTCTCTGGCATATGCGAATT GGTGACGGTAACGAGGCGCAAAATGAACACGGTGAAGTCGACCTACCTGG ATATTTCTTCCCCCCCTTGGGGGATGTCAAGACCACTATCTTCCCCTACG AGGCCAGCATGTCCAGGCCCTCGGGCCGTACCATCGTAGCGCCGCGTATC CACCATGTTCGGCTCCTCAATGCTGAGATCCTTGAACGACTATCTGGGCC CGGAACTCCTTCCCTCAGCATCGACACAACTgGGGGACCTGGACATTCCA GTGCTGTACCTGCTCCAAGATTCTTAACTCCATCACGCCGACCGGAATGC CTACCCACGAGTTCCCTCTCAAGGTTGGTGCTCCAATCATTCTCCTGCGA ACCACCAATCCCTATTATGGCATGTTCAACAGCACGAGGTTGATTCTCCT CAATGCCACACTGTGAGTTCTCACCGTCAGGGTCGCTCCCGGACCGCACG GAGGCAGGAAAGCATATATGGTATTCCCCGTATCGTCATCAACTCCAGCG AGGAAGAGCTCATGTTTTCTCTCAAGAAAATACAGTTCTCCGTTACTCTT GCGTACGCCATAATCATTAACAAGGTGCAAGGGCAGACCCTAGACTACGT CGGCATCTTCCTGCCTTCGCCGAACTTCTCGCACGGCCAACTTTTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig660:111377..112572+

>mRNA_F-serratus_M_contig660.17581.1 ID=mRNA_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig660:111377..112572+ (Fucus serratus male)
ATGCGTGCCTCAAGTGTTCTCCTCTCTCTGAGAAATGGTCGTCGTCTTTC
GACTCATCATCAACATGGGGGTCGTGGCGGCGGCCGGCAGCCAGCGCTTG
CGAAACTTCTCTGGCATATGCGAATTGGTGACGGTAACGAGGCGCAAAAT
GAACACGGTGAAGTCGACCTACCTGGATATTTCTTCCCCCCCTTGGGGGA
TGTCAAGACCACTATCTTCCCCTACGAGGCCAGCATGTCCAGGCCCTCGG
GCCGTACCATCGTAGCGCCGCGTATCCACCATGTTCGGCTCCTCAATGCT
GAGATCCTTGAACGACTATCTGGGCCCGGAACTCCTTCCCTCAGCATCGA
CACAACTgGGGGACCTGGACATTCCAGTGCTATGCGTGCCTCAAGTGTTC
TCCTCTCTCTGAGAAATGGTCGTCGTCTTTCGACTCATCATCAACATGGG
GGTCGTGGCGGCGGCCGGCAGCCAGCGCTTGCGAAACTTCTCTGGCATAT
GCGAATTGGTGACGGTAACGAGGCGCAAAATGAACACGGTGAAGTCGACC
TACCTGGATATTTCTTCCCCCCCTTGGGGGATGTCAAGACCACTATCTTC
CCCTACGAGGCCAGCATGTCCAGGCCCTCGGGCCGTACCATCGTAGCGCC
GCGTATCCACCATGTTCGGCTCCTCAATGCTGAGATCCTTGAACGACTAT
CTGGGCCCGGAACTCCTTCCCTCAGCATCGACACAACTgGGGGACCTGGA
CATTCCAGTGCTATTCTTAACTCCATCACGCCGACCGGAATGCCTACCCA
CGAGTTCCCTCTCAAGGTTGGTGCTCCAATCATTCTCCTGCGAACCACCA
ATCCCTATTATGGCATGTTCAACAGCACGAGGTTGATTCTCCTCAATGCC
ACACTATTCTTAACTCCATCACGCCGACCGGAATGCCTACCCACGAGTTC
CCTCTCAAGGTTGGTGCTCCAATCATTCTCCTGCGAACCACCAATCCCTA
TTATGGCATGTTCAACAGCACGAGGTTGATTCTCCTCAATGCCACACTGC
AGGAAAGCATATATGGTATTCCCCGTATCGTCATCAACTCCAGCGAGGAA
GAGCTCATGTTTTCTCTCAAGAAAATACAGTTCTCCGTTACTCTTGCGTA
CGCCATAATCATTAACAAGGTGCAAGGGCAGACCCTAGACTACGTCGGCA
TCTTCCTGCCTTCGCCGAACTTCTCGCACGGCCAACTTTTCGCAGGAAAG
CATATATGGTATTCCCCGTATCGTCATCAACTCCAGCGAGGAAGAGCTCA
TGTTTTCTCTCAAGAAAATACAGTTCTCCGTTACTCTTGCGTACGCCATA
ATCATTAACAAGGTGCAAGGGCAGACCCTAGACTACGTCGGCATCTTCCT
GCCTTCGCCGAACTTCTCGCACGGCCAACTTTTC
back to top