mRNA_F-serratus_M_contig6597.17563.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6597.17563.1
Unique NamemRNA_F-serratus_M_contig6597.17563.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.780e-31
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP+ LWGELM TA Y+ NR PH+AL+  +PYK L GT   L  LRV+GARAFVH E  TK L  +  EGRLV YS +SKSYR+YN  TRR+ ESRNVIFIE
Sbjct:  755 STLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 857
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.780e-31
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP+ LWGELM TA Y+ NR PH+AL+  +PYK L GT   L  LRV+GARAFVH E  TK L  +  EGRLV YS +SKSYR+YN  TRR+ ESRNVIFIE
Sbjct:  661 STLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 763
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.830e-31
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP+ LWGELM TA Y+ NR PH+AL+  +PYK L GT   L  LRV+GARAFVH E  TK L  +  EGRLV YS +SKSYR+YN  TRR+ ESRNVIFIE
Sbjct:  984 STLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 1086
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.060e-29
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP+ LWG+LM TA Y+ NR PH+AL+  +PYK L GT   L   RV+GARAFVH E  TK L  +  EGRLV YS +SKSYR+YN  TRR+ ESRNVIFIE
Sbjct:   11 STLPSLLWGKLMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 113
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.360e-28
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP FLWGEL+ TA Y+ NR PH+AL   +PYK L G    L  LRVIG+RAFVH E  T+ L  +  EGRLV YS +SKSYR+YN  TRR+  SRNV+FIE
Sbjct:  225 STLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIE 327
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.880e-28
Identity = 62/103 (60.19%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP+ LWGELM TA Y+ NR PH+AL+    YK L GT   L  LRV+GARAFVH E  TK L  +  EGRLV YS +SKSYR+YN  T R+ ESRN IFIE
Sbjct:  200 STLPSLLWGELMQTAVYLSNRTPHAALHNXXXYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIE 302
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.660e-27
Identity = 60/103 (58.25%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP FLWGEL+ TA Y+ NR PH+AL   +PYK L G    L  LRVIG+RAFVH    T+ L  +  EGRLV YS+ SKSYR+YN  TRR+  SRNV+FIE
Sbjct:  776 STLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEATHTRKLEHRAWEGRLVGYSTVSKSYRIYNSETRRVRVSRNVVFIE 878
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BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.080e-26
Identity = 59/103 (57.28%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            S LP FLWGEL+ TA Y+ NR PH AL   +PYK L G    L  LRVIG+RAFVH E  T+ L  +  EGRLV YS +SKSYR+YN  TRR+  SR V+FI+
Sbjct:  694 STLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIK 796
[Close]
BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.430e-25
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   10 PTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVIFIE 309
            P  LWGELM TA  + NR+PHS L   +PY  + G + DL  LRVIGAR+FV+ ER TK L+ +  EG+L  +S +SK+YR+YNP T  ++ESRNV FIE
Sbjct: 1109 PPTLWGELMMTAVDLSNRSPHSVLGGVTPYFKMYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIE 1208
[Close]
BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.940e-24
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIGARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIME 285
            S LP FLWGEL+ TA Y+ NR PH+AL   +PYK L G    L  LRVIG+RAFVH E  T+ L  +  EGRLV YS +SKSYR+YN  TRR+ +
Sbjct:  650 STLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRD 744
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6597.17563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE3.780e-3163.11Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE3.780e-3163.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE3.830e-3163.11Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KMG0_9PHAE1.060e-2961.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.360e-2859.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE1.880e-2860.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC75_9PHAE1.660e-2758.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIN1_9PHAE1.080e-2657.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS9_9PHAE2.430e-2554.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE3.940e-2456.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6597contigF-serratus_M_contig6597:18061..18369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.8
Seed ortholog evalue1e-13
Seed eggNOG ortholog3750.XP_008337255.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759,KOG4197@1,KOG4197@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932022.1245832-CDS-F-serratus_M_contig6597:18060..183691622932022.1245832-CDS-F-serratus_M_contig6597:18060..18369Fucus serratus maleCDSF-serratus_M_contig6597 18061..18369 +
1690964106.7455995-CDS-F-serratus_M_contig6597:18060..183691690964106.7455995-CDS-F-serratus_M_contig6597:18060..18369Fucus serratus maleCDSF-serratus_M_contig6597 18061..18369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6597.17563.1prot_F-serratus_M_contig6597.17563.1Fucus serratus malepolypeptideF-serratus_M_contig6597 18061..18369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6597.17563.1

>prot_F-serratus_M_contig6597.17563.1 ID=prot_F-serratus_M_contig6597.17563.1|Name=mRNA_F-serratus_M_contig6597.17563.1|organism=Fucus serratus male|type=polypeptide|length=103bp
SGLPTFLWGELMFTAAYVGNRAPHSALNMQSPYKMLKGTKPDLRILRVIG
ARAFVHIERRTKNLALKVVEGRLVEYSSNSKSYRVYNPVTRRIMESRNVI
FIE
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mRNA from alignment at F-serratus_M_contig6597:18061..18369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6597.17563.1 ID=mRNA_F-serratus_M_contig6597.17563.1|Name=mRNA_F-serratus_M_contig6597.17563.1|organism=Fucus serratus male|type=mRNA|length=309bp|location=Sequence derived from alignment at F-serratus_M_contig6597:18061..18369+ (Fucus serratus male)
AGCGGACTACCAACGTTTCTCTGGGGGGAGTTGATGTTCACGGCAGCGTA
TGTGGGGAATAGAGCACCGCACTCCGCGCTCAATATGCAATCCCCATACA
AAATGCTGAAGGGGACGAAGCCAGACTTACGGATTCTTCGCGTCATCGGG
GCGAGGGCCTTTGTGCACATTGAGAGACGTACCAAAAATCTCGCACTCAA
GGTAGTTGAAGGGCGATTGGTTGAGTACAGCAGCAATAGCAAGAGCTATC
GCGTGTACAATCCGGTCACCCGACGCATCATGGAAAGCAGGAACGTCATA
TTTATCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6597:18061..18369+

>mRNA_F-serratus_M_contig6597.17563.1 ID=mRNA_F-serratus_M_contig6597.17563.1|Name=mRNA_F-serratus_M_contig6597.17563.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig6597:18061..18369+ (Fucus serratus male)
AGCGGACTACCAACGTTTCTCTGGGGGGAGTTGATGTTCACGGCAGCGTA
TGTGGGGAATAGAGCACCGCACTCCGCGCTCAATATGCAATCCCCATACA
AAATGCTGAAGGGGACGAAGCCAGACTTACGGATTCTTCGCGTCATCGGG
GCGAGGGCCTTTGTGCACATTGAGAGACGTACCAAAAATCTCGCACTCAA
GGTAGTTGAAGGGCGATTGGTTGAGTACAGCAGCAATAGCAAGAGCTATC
GCGTGTACAATCCGGTCACCCGACGCATCATGGAAAGCAGGAACGTCATA
TTTATCGAGAGCGGACTACCAACGTTTCTCTGGGGGGAGTTGATGTTCAC
GGCAGCGTATGTGGGGAATAGAGCACCGCACTCCGCGCTCAATATGCAAT
CCCCATACAAAATGCTGAAGGGGACGAAGCCAGACTTACGGATTCTTCGC
GTCATCGGGGCGAGGGCCTTTGTGCACATTGAGAGACGTACCAAAAATCT
CGCACTCAAGGTAGTTGAAGGGCGATTGGTTGAGTACAGCAGCAATAGCA
AGAGCTATCGCGTGTACAATCCGGTCACCCGACGCATCATGGAAAGCAGG
AACGTCATATTTATCGAG
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