mRNA_F-serratus_M_contig6580.17547.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6580.17547.1
Unique NamemRNA_F-serratus_M_contig6580.17547.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: D7G374_ECTSI (Class-V aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G374_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.720e-28
Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:  233 EAAFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            + A   +R +L+GRL  ++TPFG+KPLVYADWTASGR +KSIE FM+ +V+P YGNTHTT+S TGAQTTAFREEARKIIA  +NA
Sbjct:  111 DTACGALRNNLIGRLAPVQTPFGSKPLVYADWTASGRPVKSIEDFMNREVLPRYGNTHTTSSETGAQTTAFREEARKIIARCLNA 195
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A6H5JDY7_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.770e-28
Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:  233 EAAFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            + A   +R +L+GRL  ++TPFG+KPLVYADWTASGR +KSIE FM+ +V+P YGNTHTT+S TGAQTTAFREEARKIIA  +NA
Sbjct:  164 DTACGALRNNLIGRLAPVQTPFGSKPLVYADWTASGRPVKSIEDFMNREVLPRYGNTHTTSSETGAQTTAFREEARKIIARCLNA 248
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A6A3IXT4_9STRA (Aminotran_5 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IXT4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.930e-26
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 2 
Query:  251 IRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            I +D++GR     TPFG K  VYAD+TASG+SL+ IERF+ ++VMP YGNTHTTTS TG QTT+FREEAR+IIA TVNA
Sbjct:   55 IASDMIGRNAPFNTPFGTKAQVYADYTASGKSLECIERFIHDQVMPTYGNTHTTTSVTGLQTTSFREEARQIIANTVNA 133
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A7S2CJ72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJ72_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.050e-25
Identity = 49/85 (57.65%), Postives = 70/85 (82.35%), Query Frame = 2 
Query:  233 EAAFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            ++A + +R  L+GRL++ +TP+G++PLVYADWTASGR+ + +E ++   V+PLYGNTHTTTS TGAQ+T FR EAR+++AE VNA
Sbjct:   42 KSALSHLREGLIGRLESFQTPYGDRPLVYADWTASGRAHERVEDYIRSNVLPLYGNTHTTTSITGAQSTCFRHEARQVVAEAVNA 126
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A836CNZ6_9STRA (Pyridoxal phosphate-dependent transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.890e-24
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  239 AFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            A A IR +LVGRL    +P+G  PLVYADWTA+GRSL SIE +++ +VMP+YGNTHTTTS TG+Q+T F+ EAR+++AE VNA
Sbjct:   55 AAATIRRELVGRLSPFMSPYGQMPLVYADWTATGRSLASIESYIANEVMPMYGNTHTTTSITGSQSTCFQHEARQLVAEYVNA 137
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A7S2SNW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNW3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.850e-24
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  245 AQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            + +R  L+GRL+   TPFG+  LVY DWTASGR  ++IER++  +V+P YGNTHT+TS TG Q+T FR EAR+I+AE VNA
Sbjct:   16 SDLREGLIGRLEPFHTPFGDLRLVYTDWTASGRGHRAIERYVESEVLPHYGNTHTSTSITGHQSTCFRHEARQIVAECVNA 96
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A6H5JLY0_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.000e-23
Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 2 
Query:  233 EAAFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            + A A +R  L+GR    +TP+G KPLVY+DWTA+GR++ SIE +++++V+PL+GNTHTTTS TGAQT+ FR EAR+IIA+ VNA
Sbjct:   92 QGAAASVRQGLLGRNTPFRTPYGMKPLVYSDWTATGRAVASIETYLADQVVPLFGNTHTTTSITGAQTSCFRHEARQIIAQAVNA 176
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BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.390e-23
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:  233 EAAFAQIRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            E A A +R  L+GR    +TP+G KPLVY+DWTA+GR++ SIE +++++V+PL+GNTHT TS TGAQT+ FR EAR+IIA+ VNA
Sbjct:   81 EGAAASVRRGLLGRNTPFRTPYGMKPLVYSDWTATGRAVASIETYLADRVVPLFGNTHTATSITGAQTSCFRHEARQIIAQAVNA 165
[Close]
BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: A0A6G0RJV4_9STRA (Aminotran_5 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RJV4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.910e-23
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 2 
Query:  251 IRADLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            I +D++GR     TPFG K  VYAD+TASG+SL+ IERF+ ++VMP YGNTHTTTS TG QTT+FREEAR+IIA  VNA
Sbjct:   55 IASDMIGRNAPFNTPFGTKAQVYADYTASGKSLECIERFIHDQVMPTYGNTHTTTSVTGLQTTSFREEARQIIASAVNA 133
[Close]
BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Match: D0NB27_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NB27_PHYIT)

HSP 1 Score: 97.1 bits (240), Expect = 3.240e-23
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:  260 DLVGRLQTIKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQTTAFREEARKIIAETVNA 487
            +++GR    ++PFG K  VYAD+TASG+SL+ IE+F+ + VMP YGNTHTTTS TG QTT+FREEAR++IA  VNA
Sbjct:    4 NMIGRNIPFQSPFGTKAQVYADYTASGKSLECIEKFIHDHVMPTYGNTHTTTSVTGLQTTSFREEARQVIARAVNA 79
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6580.17547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G374_ECTSI6.720e-2868.24Class-V aminotransferase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JDY7_9PHAE6.770e-2868.24Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
A0A6A3IXT4_9STRA3.930e-2667.09Aminotran_5 domain-containing protein n=1 Tax=Phyt... [more]
A0A7S2CJ72_9STRA7.050e-2557.65Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836CNZ6_9STRA2.890e-2462.65Pyridoxal phosphate-dependent transferase (Fragmen... [more]
A0A7S2SNW3_9STRA7.850e-2458.02Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JLY0_9PHAE1.000e-2358.82Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
D7FR81_ECTSI1.390e-2358.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0RJV4_9STRA1.910e-2365.82Aminotran_5 domain-containing protein n=1 Tax=Phyt... [more]
D0NB27_PHYIT3.240e-2361.84Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6580contigF-serratus_M_contig6580:20626..22462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue8.7e-25
Seed eggNOG ortholog2880.D7G374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size487
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6580.17547.1prot_F-serratus_M_contig6580.17547.1Fucus serratus malepolypeptideF-serratus_M_contig6580 20626..22329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932019.3597248-CDS-F-serratus_M_contig6580:20625..207951622932019.3597248-CDS-F-serratus_M_contig6580:20625..20795Fucus serratus maleCDSF-serratus_M_contig6580 20626..20795 -
1690964105.2371368-CDS-F-serratus_M_contig6580:20625..207951690964105.2371368-CDS-F-serratus_M_contig6580:20625..20795Fucus serratus maleCDSF-serratus_M_contig6580 20626..20795 -
1622932019.378118-CDS-F-serratus_M_contig6580:22145..223291622932019.378118-CDS-F-serratus_M_contig6580:22145..22329Fucus serratus maleCDSF-serratus_M_contig6580 22146..22329 -
1690964105.2498608-CDS-F-serratus_M_contig6580:22145..223291690964105.2498608-CDS-F-serratus_M_contig6580:22145..22329Fucus serratus maleCDSF-serratus_M_contig6580 22146..22329 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932019.3907723-UTR-F-serratus_M_contig6580:22329..224621622932019.3907723-UTR-F-serratus_M_contig6580:22329..22462Fucus serratus maleUTRF-serratus_M_contig6580 22330..22462 -
1690964105.2671812-UTR-F-serratus_M_contig6580:22329..224621690964105.2671812-UTR-F-serratus_M_contig6580:22329..22462Fucus serratus maleUTRF-serratus_M_contig6580 22330..22462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6580.17547.1

>prot_F-serratus_M_contig6580.17547.1 ID=prot_F-serratus_M_contig6580.17547.1|Name=mRNA_F-serratus_M_contig6580.17547.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MTMMIKKPTKRQPNRMVHNNINSSNGRHGHHHHEAAFAQIRADLVGRLQT
IKTPFGNKPLVYADWTASGRSLKSIERFMSEKVMPLYGNTHTTTSTTGAQ
TTAFREEARKIIAETVNA
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mRNA from alignment at F-serratus_M_contig6580:20626..22462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6580.17547.1 ID=mRNA_F-serratus_M_contig6580.17547.1|Name=mRNA_F-serratus_M_contig6580.17547.1|organism=Fucus serratus male|type=mRNA|length=1837bp|location=Sequence derived from alignment at F-serratus_M_contig6580:20626..22462- (Fucus serratus male)
ATCGCCTAGACAGGATTATTGTGAACCAGGTGTCTTGACGCGAGCTATAT
CTCTTAGACTTCTTCTAGTCTCCAGCAGCGCTGCAGGAACAAGTACTACT
ACTACACTGTAACATCTCTGGCGAAGAAGTGTCATGACCATGATGATAAA
GAAACCAACGAAGCGTCAACCAAATCGCATGGTTCACAACAACATCAACA
GTTCCAACGGTCGTCACGGCCATCACCATCATGAGGCCGCATTCGCGCAG
ATACGCGCTGATCTCGTCGGGAGGCTCCAAACCATCAAGACGCCTTTCGG
AAACAAGCCGCTAGTCTGTAAGTTTGTGTCACACAGCCCTTTTCCCCATA
AAACAAAGCGACTATAATTGTTGCAAACCACGTGCTGGTTCCGGGCAGAC
GACGAAACAAACGTGATCATGACATTTTATTACTAGTATTACTATTATGT
CAACTGTTGCTACTGCTGCTACAGTAGAAACTCACACGCGGGGCTTGATA
ATGAGAACATTAATTTTTAATATGTTGCCCTCCCCATGCCAAATATCAAA
TGGTAGAGATCGATCCTTAGCAAACCGGCCCCGAGACGTCTGGTGACCTT
TCGTTCTCGATTTTGCCTTTCTTTGGAGGAGTAGTGTGGATGTGCTGGGA
AAAACATTTTATAACCTTATACAGTGTAGATTTTGAGTTTGCGTTTTTTA
GGTACTACCATGCACCATCACCGAAGAGACGTTCGAGGTAGAATATCATC
GTGGGTTTGAGAGGGGAGGGAGCAATCGAGTAGCGAAAGCACCCTTAGCA
TAATACCTAGAGCACTATCTACTCCGTATCATTTATTACGGCATATATAT
ACAGAATACTTCGTACACTTCGAACTGGGATTTTTCCTCACCAAAAACAA
AGAAAAAAAGTCACGCCCAACAAGAAGTGGAGAACGATTAATAAATCGTT
AGTACCCAAAAATCGACATCACGGTTGACGAGAGAAAGGAACGGTTGAAT
CCTTCTCGCGAGAAAAAGTAAGGCAAGCACCGCAGAACGAAGAAGGTGGA
GAAGTCCTGTGTGACCTTCCTCCTGTGTCACCCCGGCTGGTACGTCCACG
AACCTGACGTCCGGATTAAATAAGATGACAACACACACACATTACTTCAT
ACACACCACATATTATTGGTAACGGGTTTGCTCCTTTCATCTACCCGCTA
TTATTGCTATTATTGCTGTAGTGCGCCTTCCATAATAAGTAGTAATGATG
TACTTGGGAAGACAGGAGATAATATCTCCTCATCGTCCGGGTGTCGTCAC
GCTTTTAATCGAAAGATAGGAGAATTTGGGCAAGCCTATTCTTTCTCTTC
TGGATAAATAATTACCAGGTATGGATTATGATCGTGTTTTCAACTCCGCT
TTGTGTCCCACGGAAAACGCGTGCCATGTATCCCTCGCCAGATCACTTCG
ATTCCTGTCCTGTTCTTTGTAGTAAGTATATTGCAGTCCTTGGCGCTTTA
ACCCGAAGCTGTACATCAGCATACTACAGCAAACTACAGCGATATTCCGC
TTCGATGAAAGTGTGGCCGGAGAAAAAGTAATCTTACGACTACGGTGTCG
CTGGTTTTTCAATATCGCACCCTTATTCACAGCAAGAATCCCCCATTTTA
ATTTCGTATTTCCACAGACGCGGACTGGACTGCAAGCGGGCGCTCTCTAA
AGAGCATTGAGCGTTTCATGAGCGAGAAGGTGATGCCTCTGTACGGTAAC
ACGCACACCACAACATCGACGACGGGCGCGCAAACCACAGCCTTTCGAGA
GGAAGCCAGGAAAATAATCGCGGAAACGGTGAACGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6580:20626..22462-

>mRNA_F-serratus_M_contig6580.17547.1 ID=mRNA_F-serratus_M_contig6580.17547.1|Name=mRNA_F-serratus_M_contig6580.17547.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig6580:20626..22462- (Fucus serratus male)
ATGACCATGATGATAAAGAAACCAACGAAGCGTCAACCAAATCGCATGGT
TCACAACAACATCAACAGTTCCAACGGTCGTCACGGCCATCACCATCATG
AGGCCGCATTCGCGCAGATACGCGCTGATCTCGTCGGGAGGCTCCAAACC
ATCAAGACGCCTTTCGGAAACAAGCCGCTAGTCTATGACCATGATGATAA
AGAAACCAACGAAGCGTCAACCAAATCGCATGGTTCACAACAACATCAAC
AGTTCCAACGGTCGTCACGGCCATCACCATCATGAGGCCGCATTCGCGCA
GATACGCGCTGATCTCGTCGGGAGGCTCCAAACCATCAAGACGCCTTTCG
GAAACAAGCCGCTAGTCTACGCGGACTGGACTGCAAGCGGGCGCTCTCTA
AAGAGCATTGAGCGTTTCATGAGCGAGAAGGTGATGCCTCTGTACGGTAA
CACGCACACCACAACATCGACGACGGGCGCGCAAACCACAGCCTTTCGAG
AGGAAGCCAGGAAAATAATCGCGGAAACGGTGAACGCCACGCGGACTGGA
CTGCAAGCGGGCGCTCTCTAAAGAGCATTGAGCGTTTCATGAGCGAGAAG
GTGATGCCTCTGTACGGTAACACGCACACCACAACATCGACGACGGGCGC
GCAAACCACAGCCTTTCGAGAGGAAGCCAGGAAAATAATCGCGGAAACGG
TGAACGCC
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