mRNA_F-serratus_M_contig658.17546.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 126 bits (317), Expect = 8.600e-32 Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 1
Query: 4 LLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL++ R VL + A R+ SARVKSTS LW+PYKPS FYYEVIEC RR+ LTG VVFIYPN+ AQ+ +TL++AFFFA+LSEA++PY + W+ W++R G
Sbjct: 1256 LLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMG 1352
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 126 bits (317), Expect = 8.610e-32 Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 1
Query: 4 LLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL+R R VL + A R SARVKSTS LW+PYKPS FYYEVIEC RRV LTG +VFIYPN+ AQ+ +TL++AFFFA+LSEA++PY + W+ W++R G
Sbjct: 1315 LLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMG 1411
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 122 bits (305), Expect = 3.590e-30 Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 1
Query: 4 LLYRHRTVLGNA-AHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL++ R VL + RE RVKS SNLW+PYKP+ FYYEVIEC RRV L G VVFIYPN+ AQI VTL++AF FA+LSE LAPY + WD WISR G
Sbjct: 1341 LLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVG 1437
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.690e-29 Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 4 LLYRHRTVL-GNAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL+R R VL + A RE +AR STS+LWKPYKPS FYYEVIEC RRV L G VVFI+PN+ AQI +TL++AF F M+SE LAP+ + WD W++RTG
Sbjct: 1085 LLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTG 1181
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.700e-29 Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 4 LLYRHRTVLGN--AAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL+R R VL AA ++ +R STS+LWKPYKPS FYYEV+EC RRV L G VVFIYPNS AQI +TL+VAF F ++SE LAPY + WD WI+R G
Sbjct: 1440 LLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMG 1537
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.330e-29 Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1
Query: 4 LLYRHRTVLGNA-AHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LL+R R VL + A RE +ARV STS LWKPYKPS FYYEVIEC RRV L G VVFIYPN+ QI +TL++AF F ++SE LAPY + WD W+SR G
Sbjct: 1896 LLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMG 1992
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 119 bits (297), Expect = 4.300e-29 Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 4 LLYRHRTVLG--NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LLYR R L + +RV STS+LWKPY+PS FYYEVIEC RRV L G VVFIYPNS AQI +TLV+AF F ++SE+L+PY + WD WISRTG
Sbjct: 1250 LLYRDRDFLKERDTCQEPPPSRVTSTSDLWKPYRPSVFYYEVIECGRRVLLAGVVVFIYPNSGAQIAITLVIAFVFVLISESLSPYASRWDTWISRTG 1347
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 116 bits (290), Expect = 3.750e-28 Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 1 GLLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
G L+R VL + A RE AR+ T++LWKPY+PS FYYEVIEC RRV L G VVFIYPN+ AQI V L++A FAM+SEALAPY + WD W+ R G
Sbjct: 805 GFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMG 902
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.360e-27 Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 4 LLYRHRTVLGN--AAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
LLY+HR VL + A R+ S +V+ S+LW PYKP RFYYEVIECVRR+SLTG VVFIYPN+ AQ+ VTL++AF F + S LAPY + WD IS G
Sbjct: 1604 LLYKHRRVLKSEDAGKRQTSPQVQPISDLWFPYKPGRFYYEVIECVRRMSLTGVVVFIYPNTAAQVAVTLMIAFSFVVTSVVLAPYVSKWDASISLVG 1701
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 112 bits (279), Expect = 1.170e-26 Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 4 LLYRHRTVLGNAAH-REGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISR 285
LL+R R VL RE RV S SNLW+PY+PS +YYEVIEC RR+ LTG VVFIYPN+ AQI +TL++ FA+LSEAL PY WD W+SR
Sbjct: 2584 LLFRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSR 2678 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig658.17546.1 >prot_F-serratus_M_contig658.17546.1 ID=prot_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=polypeptide|length=97bp GLLYRHRTVLGNAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLback to top mRNA from alignment at F-serratus_M_contig658:325231..325521+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig658.17546.1 ID=mRNA_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=mRNA|length=291bp|location=Sequence derived from alignment at F-serratus_M_contig658:325231..325521+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig658:325231..325521+ >mRNA_F-serratus_M_contig658.17546.1 ID=mRNA_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig658:325231..325521+ (Fucus serratus male)back to top |