mRNA_F-serratus_M_contig658.17546.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig658.17546.1
Unique NamemRNA_F-serratus_M_contig658.17546.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 8.600e-32
Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    4 LLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL++ R VL  + A R+ SARVKSTS LW+PYKPS FYYEVIEC RR+ LTG VVFIYPN+ AQ+ +TL++AFFFA+LSEA++PY + W+ W++R G
Sbjct: 1256 LLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMG 1352          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.610e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    4 LLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL+R R VL  + A R  SARVKSTS LW+PYKPS FYYEVIEC RRV LTG +VFIYPN+ AQ+ +TL++AFFFA+LSEA++PY + W+ W++R G
Sbjct: 1315 LLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMG 1411          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.590e-30
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    4 LLYRHRTVLGNA-AHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL++ R VL +    RE   RVKS SNLW+PYKP+ FYYEVIEC RRV L G VVFIYPN+ AQI VTL++AF FA+LSE LAPY + WD WISR G
Sbjct: 1341 LLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVG 1437          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.690e-29
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 LLYRHRTVL-GNAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL+R R VL  + A RE +AR  STS+LWKPYKPS FYYEVIEC RRV L G VVFI+PN+ AQI +TL++AF F M+SE LAP+ + WD W++RTG
Sbjct: 1085 LLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTG 1181          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.700e-29
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 LLYRHRTVLGN--AAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL+R R VL    AA ++  +R  STS+LWKPYKPS FYYEV+EC RRV L G VVFIYPNS AQI +TL+VAF F ++SE LAPY + WD WI+R G
Sbjct: 1440 LLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMG 1537          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.330e-29
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    4 LLYRHRTVLGNA-AHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LL+R R VL  + A RE +ARV STS LWKPYKPS FYYEVIEC RRV L G VVFIYPN+  QI +TL++AF F ++SE LAPY + WD W+SR G
Sbjct: 1896 LLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMG 1992          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.300e-29
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 LLYRHRTVLG--NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LLYR R  L   +       +RV STS+LWKPY+PS FYYEVIEC RRV L G VVFIYPNS AQI +TLV+AF F ++SE+L+PY + WD WISRTG
Sbjct: 1250 LLYRDRDFLKERDTCQEPPPSRVTSTSDLWKPYRPSVFYYEVIECGRRVLLAGVVVFIYPNSGAQIAITLVIAFVFVLISESLSPYASRWDTWISRTG 1347          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.750e-28
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 GLLYRHRTVLG-NAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            G L+R   VL  + A RE  AR+  T++LWKPY+PS FYYEVIEC RRV L G VVFIYPN+ AQI V L++A  FAM+SEALAPY + WD W+ R G
Sbjct:  805 GFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMG 902          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.360e-27
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 LLYRHRTVLGN--AAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG 291
            LLY+HR VL +  A  R+ S +V+  S+LW PYKP RFYYEVIECVRR+SLTG VVFIYPN+ AQ+ VTL++AF F + S  LAPY + WD  IS  G
Sbjct: 1604 LLYKHRRVLKSEDAGKRQTSPQVQPISDLWFPYKPGRFYYEVIECVRRMSLTGVVVFIYPNTAAQVAVTLMIAFSFVVTSVVLAPYVSKWDASISLVG 1701          
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.170e-26
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    4 LLYRHRTVLGNAAH-REGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSLTGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISR 285
            LL+R R VL      RE   RV S SNLW+PY+PS +YYEVIEC RR+ LTG VVFIYPN+ AQI +TL++   FA+LSEAL PY   WD W+SR
Sbjct: 2584 LLFRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSR 2678          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig658.17546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X5_ECTSI8.600e-3262.89Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE8.610e-3263.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE3.590e-3064.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G301_ECTSI1.690e-2962.89Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI1.700e-2962.24Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G5Y7_ECTSI2.330e-2963.92Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI4.300e-2962.24Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI3.750e-2860.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY65_9PHAE3.360e-2760.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG7_ECTSI1.170e-2660.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig658contigF-serratus_M_contig658:325231..325521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue5.8e-27
Seed eggNOG ortholog2880.D7G2X5
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932019.3061628-CDS-F-serratus_M_contig658:325230..3255211622932019.3061628-CDS-F-serratus_M_contig658:325230..325521Fucus serratus maleCDSF-serratus_M_contig658 325231..325521 +
1690964105.220467-CDS-F-serratus_M_contig658:325230..3255211690964105.220467-CDS-F-serratus_M_contig658:325230..325521Fucus serratus maleCDSF-serratus_M_contig658 325231..325521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig658.17546.1prot_F-serratus_M_contig658.17546.1Fucus serratus malepolypeptideF-serratus_M_contig658 325231..325521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig658.17546.1

>prot_F-serratus_M_contig658.17546.1 ID=prot_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=polypeptide|length=97bp
GLLYRHRTVLGNAAHREGSARVKSTSNLWKPYKPSRFYYEVIECVRRVSL
TGAVVFIYPNSLAQIVVTLVVAFFFAMLSEALAPYDAGWDIWISRTG
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mRNA from alignment at F-serratus_M_contig658:325231..325521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig658.17546.1 ID=mRNA_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=mRNA|length=291bp|location=Sequence derived from alignment at F-serratus_M_contig658:325231..325521+ (Fucus serratus male)
GGCTTGTTGTACAGGCATCGGACGGTCCTTGGGAACGCGGCGCATCGTGA AGGTTCGGCGAGAGTTAAGTCGACCTCGAACCTTTGGAAGCCATACAAGC CTTCGCGGTTCTACTACGAAGTCATCGAGTGTGTTCGACGAGTTTCACTG ACGGGTGCTGTCGTGTTTATCTATCCCAACAGCTTGGCACAGATCGTGGT AACGCTCGTCGTGGCATTCTTTTTTGCCATGCTGTCAGAGGCGCTGGCTC CGTATGATGCAGGGTGGGACATTTGGATAAGTCGAACTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig658:325231..325521+

>mRNA_F-serratus_M_contig658.17546.1 ID=mRNA_F-serratus_M_contig658.17546.1|Name=mRNA_F-serratus_M_contig658.17546.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig658:325231..325521+ (Fucus serratus male)
GGCTTGTTGTACAGGCATCGGACGGTCCTTGGGAACGCGGCGCATCGTGA
AGGTTCGGCGAGAGTTAAGTCGACCTCGAACCTTTGGAAGCCATACAAGC
CTTCGCGGTTCTACTACGAAGTCATCGAGTGTGTTCGACGAGTTTCACTG
ACGGGTGCTGTCGTGTTTATCTATCCCAACAGCTTGGCACAGATCGTGGT
AACGCTCGTCGTGGCATTCTTTTTTGCCATGCTGTCAGAGGCGCTGGCTC
CGTATGATGCAGGGTGGGACATTTGGATAAGTCGAACTGGGGGCTTGTTG
TACAGGCATCGGACGGTCCTTGGGAACGCGGCGCATCGTGAAGGTTCGGC
GAGAGTTAAGTCGACCTCGAACCTTTGGAAGCCATACAAGCCTTCGCGGT
TCTACTACGAAGTCATCGAGTGTGTTCGACGAGTTTCACTGACGGGTGCT
GTCGTGTTTATCTATCCCAACAGCTTGGCACAGATCGTGGTAACGCTCGT
CGTGGCATTCTTTTTTGCCATGCTGTCAGAGGCGCTGGCTCCGTATGATG
CAGGGTGGGACATTTGGATAAGTCGAACTGGG
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