mRNA_F-serratus_M_contig657.17542.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig657.17542.1
Unique NamemRNA_F-serratus_M_contig657.17542.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 248 bits (634), Expect = 1.220e-68
Identity = 157/484 (32.44%), Postives = 258/484 (53.31%), Query Frame = 1
Query:    4 SEMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVK--KTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLD----AADRRQEHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            SE+     +  W +V R  G   +G + +F +K  + GR+  YK R +A+GF++  G+ +     P  +  SIR++L +   K +   +LD D A++ +++K ++++E+P    N+   + +L KA+YGL  A     ++  A     G   C  D  V+ +  ++N V         +++A++T ++ ++    L+S F +K+LG+ +F LG  I  DR A TL   Q  Y+  + S+F  +  K    P  +G K L+K  +P T AE E+MR  PYR  +G L+   T TRPD+ Y   QL  F +NPG  HW+AA R L+YL  TK  GI Y G +G    + A+ DAD+ +  D RRSVSG  +M+GG  + + S+ ++  A +S+E+EYMAL+    E+ + R +   L      A +  E N G    +   G     +   + +HH +R+ V   ++ + YV + +Q AD+LTKAL
Sbjct:  858 SELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTKDNYVYVCLYVDD-MIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMK-LTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVA-MEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTK-HVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKAL 1337          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 234 bits (598), Expect = 1.020e-67
Identity = 163/491 (33.20%), Postives = 251/491 (51.12%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVF-RQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVK--KTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLDAADRRQ----EHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKALDINTF 1452
            K+E D    +  W  V R     V+ TK +F +K  + G I  +K R +A GF ++ G+ +        S  SIR+ L +     + L +LDVD A++ A++K ++YIE PE      D+V +L KALYGL  AG    K+    L   G + C +D  ++  +   +   +        +   ++T+ DE + +   R  F IK+LG  +  LG  I  DR    L+ +Q HYV+T+  +F  +  +  T P     K LSK D P+ + +  EM   PYR  +G L   A  TRPDI +A   L  F +NPGP HW AA R L+YL  T+  GI+YGG     T +  + DAD+ T  D RRSVSG  +M+ GG I + ++ +   A +SSE+EY+AL+    E+ ++R +   L    ++     E N G    ++  G     +   + +HH VRD V   ++++ YV++  Q AD+LTK+L    F
Sbjct:   14 KAEFDAHSRNGTWTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAAR--FRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLK-LSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTK-HIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRF 499          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.030e-64
Identity = 162/485 (33.40%), Postives = 255/485 (52.58%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVP-RPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLL-----DAADRRQEHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            + E +G L    +  V   P+G+  + +K  F  K  K+G+I T+K R +A+GF +I  + Y     P  S ASI++ML +A  K   L   DV  AY  A +  E++++LP    + S ++ + ++A+YGL  +G       +  L   G EQC+ DP VFR+++ E VV+        +LVA   + D E+ +  L   FP K+LG+ +++ GC I +D +AGTL   Q  Y+ +M  +F VK TS  PA  GA     D  P+ E   EE    P REA+G++M  +T +RPD+++A   +      P   HW A  + L YL  T+ +GITY    GS   L+ +VDA ++   D RRSVSG    +GG  +S  S+ + + + +S+E+EY+A  E V E  F+R V   +      ++ +  E N G      Q+     +    + ++H +R     G + + +V + EQHAD+LTKAL
Sbjct:  757 REEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPKRE--DEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIA-LVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.350e-64
Identity = 162/485 (33.40%), Postives = 255/485 (52.58%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVP-RPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLL-----DAADRRQEHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            + E +G L    +  V   P+G+  + +K  F  K  K+G+I T+K R +A+GF +I  + Y     P  S ASI++ML +A  K   L   DV  AY  A +  E++++LP    + S ++ + ++A+YGL  +G       +  L   G EQC+ DP VFR+++ E VV+        +LVA   + D E+ +  L   FP K+LG+ +++ GC I +D +AGTL   Q  Y+ +M  +F VK TS  PA  GA     D  P+ E   EE    P REA+G++M  +T +RPD+++A   +      P   HW A  + L YL  T+ +GITY    GS   L+ +VDA ++   D RRSVSG    +GG  +S  S+ + + + +S+E+EY+A  E V E  F+R V   +      ++ +  E N G      Q+     +    + ++H +R     G + + +V + EQHAD+LTKAL
Sbjct: 1136 REEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPKRE--DEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIA-LVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.400e-64
Identity = 162/485 (33.40%), Postives = 255/485 (52.58%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVP-RPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLL-----DAADRRQEHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            + E +G L    +  V   P+G+  + +K  F  K  K+G+I T+K R +A+GF +I  + Y     P  S ASI++ML +A  K   L   DV  AY  A +  E++++LP    + S ++ + ++A+YGL  +G       +  L   G EQC+ DP VFR+++ E VV+        +LVA   + D E+ +  L   FP K+LG+ +++ GC I +D +AGTL   Q  Y+ +M  +F VK TS  PA  GA     D  P+ E   EE    P REA+G++M  +T +RPD+++A   +      P   HW A  + L YL  T+ +GITY    GS   L+ +VDA ++   D RRSVSG    +GG  +S  S+ + + + +S+E+EY+A  E V E  F+R V   +      ++ +  E N G      Q+     +    + ++H +R     G + + +V + EQHAD+LTKAL
Sbjct: 1299 REEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPKRE--DEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIA-LVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 3.420e-64
Identity = 161/485 (33.20%), Postives = 255/485 (52.58%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVP-RPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLL-----DAADRRQEHN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            + E +G L    +  V   P+G+  + +K  F  K  K+G+I T+K R +A+GF +I  + Y     P  S ASI++ML +A  K   L   DV  AY  A +  E++++LP    + S ++ + ++A+YGL  +G       +  L   G EQC+ DP VFR+++ + VV+        +LVA   + D E+ +  L   FP K+LG+ +++ GC I +D +AGTL   Q  Y+ +M  +F VK TS  PA  GA     D  P+ E   EE    P REA+G++M  +T +RPD+++A   +      P   HW A  + L YL  T+ +GITY    GS   L+ +VDA ++   D RRSVSG    +GG  +S  S+ + + + +S+E+EY+A  E V E  F+R V   +      ++ +  E N G      Q+     +    + ++H +R     G + + +V + EQHAD+LTKAL
Sbjct: 1156 REEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPKRE--DEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIA-LVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 231 bits (588), Expect = 1.600e-62
Identity = 151/485 (31.13%), Postives = 258/485 (53.20%), Query Frame = 1
Query:    7 EMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTSTTPAAAGAKP---LSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLDAADRRQE-----HN*GR*RRSYQDGDQPFQQ*AYEAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            E   QL +  W +V  P GK  L +K +F  K    G+I  +K R + +G  + KG+ +     P    +SIR +L +AA +D  + ++D   A+++ ++  E+Y+  PE Y  S  +V RL+K+LYGL  A  + +      L   GL Q + DP ++ +  ++ +V         LL+ S+ K+  ++  + L  CF + D+G+ +F LG  I++DR+   +  DQ  Y+  +  +F ++  +  PAA    P   LSKD  P +  E ++M A PY+EAVG+L+ A+ + RPDI +A   +  F+ NPGPAHW A  R L+Y+  T    + Y GT  S  +++ + D+DF++  D R+SV+G   ++  G++SW ++ +   A +++E+EYMAL+    E  +LR +   L     R        N G    + Q+G    +    + +HH +R+ +   L++  YV + +  AD LTK+L
Sbjct:  862 EYKSQLENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQESG-KVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYKSSQKKMVFVAVWVDD-LLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGME--NCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSS--EITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLRGLSEELVPPSERIPLRIFVDNQGALNLA-QNGSYQSRTKHIDVRHHFLREKISEKLIKPTYVPTSDMVADSLTKSL 1339          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A8H8NTR4_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NTR4_9AGAM)

HSP 1 Score: 230 bits (586), Expect = 3.580e-62
Identity = 152/482 (31.54%), Postives = 245/482 (50.83%), Query Frame = 1
Query:    7 EMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVK--KTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLD--AADRRQEHN*GR*RRSYQDGDQPFQQ*AY-EAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            E+D    H+VW    RP GK ++G   ++  K G DG I  YK R +A+G+ +  GI Y     P  +  + R++L +  + + +L +LD+  A++  N+  E+Y+E PE + + S+ V RL KALYGL  A           L G G  +C++D  VF +    N+ +        LL A +     E+  + LR  F + DLG+ + ++G  I +DR+ GTL   Q  Y+  + ++F +   K+  TP A         D P+ ++ T  +  T Y+  VG+LM A   TRPDI +A   L     NPG  HW A  R L+YL  TK VGI Y G+      L  +VDADF+   ++ RS +G    + GG ++W SR +   + +S+E+EY+A +    EL ++RQ  G ++  + D    H   +   +        Q   +   ++H +R+ + +  +++ YV + EQ AD+LTK L
Sbjct: 1899 EIDSITKHRVWMATQRPSGKNIVGCMWVYSYKLGPDGEIVRYKARLVAKGYSQQPGIDYSEISSPVAASDAFRILLALTTLGNLELLQLDIKTAFLHGNLDEEIYMEQPEGFDDGSENVWRLVKALYGLKQAARAFYLRLKEVLEGIGFTRCESDYAVFIKQDENNLAIILAHVDDMLL-AGKPLTYLEEIKSKLRESFELVDLGEAKMFVGVEIERDRNEGTLKISQKQYINDILTRFGMSDCKSCETPMAESL------DLPKLDSPT--IDRTHYQRLVGSLMYAMISTRPDIAFATGLLAQHAANPGDEHWLAGKRVLRYLQGTKSVGIIYRGSE--VKDLEGYVDADFAGDKNSSRSTTGWVFRIAGGCVAWSSRKQSTISLSSTEAEYVAASSAARELIWIRQFLGEINHRSNDATILHTDNQSSMALARNPSNHQNTKHIRIKYHFIREMIFLRELELRYVPTDEQIADMLTKPL 2369          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 220 bits (560), Expect = 3.950e-62
Identity = 131/403 (32.51%), Postives = 219/403 (54.34%), Query Frame = 1
Query:    1 KSEMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSD--QVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVKKTST--TPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAE 1197
            +SEM+    ++VW +V   KG   +G K ++++K G DG+++TYK R +A+G+R+ +GI Y     P     SIR++L IAA  D+++ ++DV  A++   +K E+Y+  PE + + SD  +V +LQ+++YGL  A    +  F+  +      +C+ +P V++++   +++         LL  ++    +   +  L   F +KDLG+  + LG  I +DR    L   Q  Y+ T+  ++ ++K+     P   G   LS+++ P+T  E E M   PY  AVGA+M   T TRPD+ YA      +  NPG  HW+     L+YL RTK   + YG +  S   L  + DA F++  D  +S+SG    L GGAISW S  +   A +++E+EY+A +E
Sbjct:  113 ESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDILLFGNDIPSMQSTKVW-LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGVS-LSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSELS---LKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASE 510          
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Match: A0A8H7LJZ0_9AGAM (Gag-polypeptide of LTR copia-type n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7LJZ0_9AGAM)

HSP 1 Score: 224 bits (572), Expect = 4.570e-62
Identity = 152/482 (31.54%), Postives = 243/482 (50.41%), Query Frame = 1
Query:    7 EMDGQLAHQVWGVVPRPKGKTVLGTKTIFERKNGKDGRIKTYKCRFMAQGFRKIKGIRYPLR*LPTTSQASIRMMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQKALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVXXXXXXXXLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGTLNFDQPHYVRTMASKFRVK--KTSTTPAAAGAKPLSKDDAPQTEAETEEMRATPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYLWRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAISWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLD--AADRRQEHN*GR*RRSYQDGDQPFQQ*AY-EAQHHIVRDAVVIGLVQIHYVKSGEQHADVLTKAL 1437
            E++    H+VW    R  GK ++G   ++  K G DG I  YK R +A+G+ +  GI Y     P  +  + R++L +  + + +L +LD+  A++  N+  E+Y+E PE + + S+ V RL KALYGL  A           L G G  +C++D  VF +    N+ +        LL A +     E+  + LR  F + DLG+ + ++G  I +DR+ GTL   Q  Y+  + ++F +   K+  TP A     L K D+P  +        T Y+  VG+LM A   TRPDI +A   L     NPG  HW A  R L+YL  TK VGI Y G+      L  +VDADF+   ++ RS +G    + GG ++W SR +   + +S+E+EY+A +    EL ++RQ  G ++  + D    H   +   +        Q   +   ++H +R+ + +  +++ YV + EQ ADVLTK L
Sbjct:  244 EINSITKHRVWMATQRLSGKNIVGCMWVYSYKLGPDGEIVRYKARLVAKGYSQQPGIDYSKISSPVAASDAFRILLALTTLGNLELLQLDIKTAFLHGNLNEEIYMEQPEGFDDGSENVWRLVKALYGLKQAARAFYLRLKEVLEGIGFTRCESDYAVFIKQDENNLAIILAHVDDMLL-AGKPLTYLEEIKSKLRESFELVDLGEAKMFVGVEIERDRNEGTLKISQKQYINDILTRFGMSNCKSCETPMAE-LLDLPKLDSPTIDR-------THYQRLVGSLMYAMISTRPDIAFATGLLAQHAANPGDEHWLAGKRVLRYLQGTKSVGIIYRGSE--VKDLEGYVDADFAGDKNSSRSTTGWVFRIAGGCVAWSSRKQSTISLSSTEAEYVAASSAARELIWIRQFLGEINHRSNDATILHTDNQSSMALARNPSNHQNTKHIRIKYHFIREMIFLRELELRYVPTDEQIADVLTKPL 714          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig657.17542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H572_PHYRM1.220e-6832.44Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A8K1CTN1_PYTOL1.020e-6733.20Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5KSG8_9PHAE1.030e-6433.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.350e-6433.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.400e-6433.40Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE3.420e-6433.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A9Z683_LYGHE1.600e-6231.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8NTR4_9AGAM3.580e-6231.54Copia-like polyprotein/retrotransposon n=1 Tax=Rhi... [more]
A0A2K3MAN7_TRIPR3.950e-6232.51Retrotransposon protein putative Ty1-copia subclas... [more]
A0A8H7LJZ0_9AGAM4.570e-6231.54Gag-polypeptide of LTR copia-type n=1 Tax=Rhizocto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig657contigF-serratus_M_contig657:343828..345279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue5.2e-49
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1452
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig657.17542.1prot_F-serratus_M_contig657.17542.1Fucus serratus malepolypeptideF-serratus_M_contig657 344053..345102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932018.9721336-UTR-F-serratus_M_contig657:343827..3440521622932018.9721336-UTR-F-serratus_M_contig657:343827..344052Fucus serratus maleUTRF-serratus_M_contig657 343828..344052 +
1690964105.0588317-UTR-F-serratus_M_contig657:343827..3440521690964105.0588317-UTR-F-serratus_M_contig657:343827..344052Fucus serratus maleUTRF-serratus_M_contig657 343828..344052 +
1622932019.0036473-UTR-F-serratus_M_contig657:345102..3452791622932019.0036473-UTR-F-serratus_M_contig657:345102..345279Fucus serratus maleUTRF-serratus_M_contig657 345103..345279 +
1690964105.0860126-UTR-F-serratus_M_contig657:345102..3452791690964105.0860126-UTR-F-serratus_M_contig657:345102..345279Fucus serratus maleUTRF-serratus_M_contig657 345103..345279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932018.98684-CDS-F-serratus_M_contig657:344052..3451021622932018.98684-CDS-F-serratus_M_contig657:344052..345102Fucus serratus maleCDSF-serratus_M_contig657 344053..345102 +
1690964105.0732086-CDS-F-serratus_M_contig657:344052..3451021690964105.0732086-CDS-F-serratus_M_contig657:344052..345102Fucus serratus maleCDSF-serratus_M_contig657 344053..345102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig657.17542.1

>prot_F-serratus_M_contig657.17542.1 ID=prot_F-serratus_M_contig657.17542.1|Name=mRNA_F-serratus_M_contig657.17542.1|organism=Fucus serratus male|type=polypeptide|length=350bp
MMLGIAAVKDWKLRRLDVDMAYMEANVKYELYIELPEDYPNSSDQVGRLQ
KALYGLVHAGLLRSKSFSAELAGKGLEQCQTDPFVFRQVLRENVVVIIVV
YFDDLLVASETKRDEEQAINDLRSCFPIKDLGKTEFYLGCHITQDRDAGT
LNFDQPHYVRTMASKFRVKKTSTTPAAAGAKPLSKDDAPQTEAETEEMRA
TPYREAVGALMGAATMTRPDITYAAHQLETFDDNPGPAHWRAATRALQYL
WRTKGVGITYGGTSGSCTKLSAWVDADFSTYPDTRRSVSGGEVMLGGGAI
SWFSRMRKVAATASSESEYMALAEVVNELRFLRQVKGLLDAADRRQEHN*
back to top

mRNA from alignment at F-serratus_M_contig657:343828..345279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig657.17542.1 ID=mRNA_F-serratus_M_contig657.17542.1|Name=mRNA_F-serratus_M_contig657.17542.1|organism=Fucus serratus male|type=mRNA|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig657:343828..345279+ (Fucus serratus male)
AAAAGCGAAATGGACGGGCAACTCGCGCACCAGGTGTGGGGGGTGGTTCC CCGTCCCAAAGGCAAGACGGTGCTTGGCACCAAAACCATCTTCGAACGAA AAAACGGAAAGGACGGGCGAATAAAAACGTACAAGTGCAGATTCATGGCT CAGGGGTTCCGAAAAATAAAAGGTATCAGGTATCCACTACGATGATTACC CACAACATCGCAGGCTAGTATAAGGATGATGCTCGGTATCGCAGCGGTGA AAGACTGGAAGCTCCGTCGACTCGACGTCGACATGGCGTACATGGAGGCC AACGTAAAATACGAACTGTACATCGAGCTACCTGAAGACTATCCTAACTC CAGTGACCAGGTGGGCCGTCTGCAAAAGGCATTGTACGGCCTTGTGCACG CCGGATTGTTACGGTCGAAATCGTTCAGCGCCGAACTCGCCGGTAAGGGG TTAGAGCAATGTCAGACCGACCCATTCGTGTTCAGGCAAGTACTGCGCGA GAACGTCGTCGTCATCATCGTGGTATACTTTGACGATCTTCTGGTGGCGA GTGAAACGAAGCGCGACGAGGAGCAGGCGATAAATGACCTACGATCCTGT TTCCCAATCAAGGACTTAGGAAAGACAGAATTCTATCTCGGATGCCACAT CACGCAGGATCGCGACGCGGGAACGCTGAATTTTGACCAACCCCACTACG TACGGACCATGGCTTCGAAATTCAGAGTCAAGAAAACCAGCACCACGCCG GCGGCAGCGGGAGCAAAGCCCCTGTCCAAGGACGATGCCCCACAGACCGA AGCGGAGACGGAAGAAATGCGTGCCACCCCTTACCGGGAGGCGGTAGGAG CCCTAATGGGGGCTGCGACCATGACTCGCCCTGATATCACGTACGCTGCT CATCAGCTAGAAACGTTTGACGACAACCCGGGACCAGCACACTGGAGGGC GGCGACAAGGGCACTACAATACCTGTGGCGCACCAAGGGCGTTGGGATCA CCTACGGTGGAACGTCGGGGTCGTGCACAAAGCTGTCGGCATGGGTGGAC GCCGATTTTTCCACTTACCCAGACACTCGGCGCTCAGTTTCAGGTGGAGA AGTGATGCTGGGGGGGGGTGCGATCAGTTGGTTCTCGAGGATGCGGAAGG TAGCCGCGACCGCGTCATCCGAATCAGAGTATATGGCGCTGGCAGAAGTT GTAAATGAGCTCCGTTTCCTTCGACAGGTGAAGGGGCTTCTTGACGCCGC CGATCGACGACAAGAACACAATTAAGGAAGATAGCGAAGGAGCTATCAAG ATGGCGACCAACCGTTTCAGCAGTAGGCGTACGAGGCACAGCACCACATC GTCCGCGATGCGGTAGTGATTGGTTTAGTTCAAATCCATTACGTCAAGTC GGGGGAGCAACATGCCGATGTGCTGACGAAAGCGTTGGACATTAACACCT TT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig657:343828..345279+

>mRNA_F-serratus_M_contig657.17542.1 ID=mRNA_F-serratus_M_contig657.17542.1|Name=mRNA_F-serratus_M_contig657.17542.1|organism=Fucus serratus male|type=CDS|length=2100bp|location=Sequence derived from alignment at F-serratus_M_contig657:343828..345279+ (Fucus serratus male)
ATGATGCTCGGTATCGCAGCGGTGAAAGACTGGAAGCTCCGTCGACTCGA
CGTCGACATGGCGTACATGGAGGCCAACGTAAAATACGAACTGTACATCG
AGCTACCTGAAGACTATCCTAACTCCAGTGACCAGGTGGGCCGTCTGCAA
AAGGCATTGTACGGCCTTGTGCACGCCGGATTGTTACGGTCGAAATCGTT
CAGCGCCGAACTCGCCGGTAAGGGGTTAGAGCAATGTCAGACCGACCCAT
TCGTGTTCAGGCAAGTACTGCGCGAGAACGTCGTCGTCATCATCGTGGTA
TACTTTGACGATCTTCTGGTGGCGAGTGAAACGAAGCGCGACGAGGAGCA
GGCGATAAATGACCTACGATCCTGTTTCCCAATCAAGGACTTAGGAAAGA
CAGAATTCTATCTCGGATGCCACATCACGCAGGATCGCGACGCGGGAACG
CTGAATTTTGACCAACCCCACTACGTACGGACCATGGCTTCGAAATTCAG
AGTCAAGAAAACCAGCACCACGCCGGCGGCAGCGGGAGCAAAGCCCCTGT
CCAAGGACGATGCCCCACAGACCGAAGCGGAGACGGAAGAAATGCGTGCC
ACCCCTTACCGGGAGGCGGTAGGAGCCCTAATGGGGGCTGCGACCATGAC
TCGCCCTGATATCACGTACGCTGCTCATCAGCTAGAAACGTTTGACGACA
ACCCGGGACCAGCACACTGGAGGGCGGCGACAAGGGCACTACAATACCTG
TGGCGCACCAAGGGCGTTGGGATCACCTACGGTGGAACGTCGGGGTCGTG
CACAAAGCTGTCGGCATGGGTGGACGCCGATTTTTCCACTTACCCAGACA
CTCGGCGCTCAGTTTCAGGTGGAGAAGTGATGCTGGGGGGGGGTGCGATC
AGTTGGTTCTCGAGGATGCGGAAGGTAGCCGCGACCGCGTCATCCGAATC
AGAGTATATGGCGCTGGCAGAAGTTGTAAATGAGCTCCGTTTCCTTCGAC
AGGTGAAGGGGCTTCTTGACGCCGCCGATCGACGACAAGAACACAATTAA
ATGATGCTCGGTATCGCAGCGGTGAAAGACTGGAAGCTCCGTCGACTCGA
CGTCGACATGGCGTACATGGAGGCCAACGTAAAATACGAACTGTACATCG
AGCTACCTGAAGACTATCCTAACTCCAGTGACCAGGTGGGCCGTCTGCAA
AAGGCATTGTACGGCCTTGTGCACGCCGGATTGTTACGGTCGAAATCGTT
CAGCGCCGAACTCGCCGGTAAGGGGTTAGAGCAATGTCAGACCGACCCAT
TCGTGTTCAGGCAAGTACTGCGCGAGAACGTCGTCGTCATCATCGTGGTA
TACTTTGACGATCTTCTGGTGGCGAGTGAAACGAAGCGCGACGAGGAGCA
GGCGATAAATGACCTACGATCCTGTTTCCCAATCAAGGACTTAGGAAAGA
CAGAATTCTATCTCGGATGCCACATCACGCAGGATCGCGACGCGGGAACG
CTGAATTTTGACCAACCCCACTACGTACGGACCATGGCTTCGAAATTCAG
AGTCAAGAAAACCAGCACCACGCCGGCGGCAGCGGGAGCAAAGCCCCTGT
CCAAGGACGATGCCCCACAGACCGAAGCGGAGACGGAAGAAATGCGTGCC
ACCCCTTACCGGGAGGCGGTAGGAGCCCTAATGGGGGCTGCGACCATGAC
TCGCCCTGATATCACGTACGCTGCTCATCAGCTAGAAACGTTTGACGACA
ACCCGGGACCAGCACACTGGAGGGCGGCGACAAGGGCACTACAATACCTG
TGGCGCACCAAGGGCGTTGGGATCACCTACGGTGGAACGTCGGGGTCGTG
CACAAAGCTGTCGGCATGGGTGGACGCCGATTTTTCCACTTACCCAGACA
CTCGGCGCTCAGTTTCAGGTGGAGAAGTGATGCTGGGGGGGGGTGCGATC
AGTTGGTTCTCGAGGATGCGGAAGGTAGCCGCGACCGCGTCATCCGAATC
AGAGTATATGGCGCTGGCAGAAGTTGTAAATGAGCTCCGTTTCCTTCGAC
AGGTGAAGGGGCTTCTTGACGCCGCCGATCGACGACAAGAACACAATTAA
back to top