mRNA_F-serratus_M_contig6568.17539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6568.17539.1
Unique Name	mRNA_F-serratus_M_contig6568.17539.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.380e-32
Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 1

Query:    1 NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGET--ERGAVFGDYFMLEAMV 306
            NLP D +PPADFDAP +ATDNGKDSSA AIV+S L+E++ ET D  YL  ++ YLSA+     Y PDATDGYQSILRRA  +WG+   E GAVFGDYF LE MV
Sbjct:  333 NLPEDLIPPADFDAPESATDNGKDSSAAAIVSSGLLELFLETEDPTYLVKSQTYLSALFAGTCYQPDATDGYQSILRRAMREWGDEDGEIGAVFGDYFFLETMV 436

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.810e-25
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1

Query:    1 NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVL-TADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAMV 306
            NLP D VP ADFDAP N +DN KDSSATAIVASAL E++  TG+  YL  A+++LS++L ++ Y+   ATDG+Q++LR + A WGE   G+V GDYF+LEAMV
Sbjct:  209 NLPDDNVPYADFDAPEN-SDNPKDSSATAIVASALFELFELTGEPTYLEKAQEFLSSLLLSSTYFDSSATDGWQALLRESAAAWGEDSVGSVTGDYFLLEAMV 310

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: D7FUK3_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.390e-24
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1

Query:    1 NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYL-SAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAMV 306
            NLP D VP ADFD PV+ +DN  DSSATAIV SAL E++  TG+  YL  A+++L S +L++ Y+   ATDG+Q+ILR +TA WG+   G V  DYF+LE++V
Sbjct:   54 NLPDDNVPYADFDDPVD-SDNPNDSSATAIVTSALFELFELTGEPSYLEKAQEFLPSLLLSSTYFDSSATDGWQTILRNSTAAWGDAAMGFVTADYFLLESIV 155

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.650e-24
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 1

Query:    1 NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTA-DYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAMV 306
            NLP D VP ADFDAPV+ +DN KDSSATAIV SAL E++ +TG+  YL   +++LS++L + +Y+   ATDG+Q+ILR + A WG+   G+V  DYF+LE+MV
Sbjct:  267 NLPDDNVPYADFDAPVD-SDNPKDSSATAIVTSALFELFEQTGEPSYLEKGQEFLSSLLLSPNYFDSSATDGWQAILRNSAAAWGDAAVGSVTADYFLLESMV 368

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.720e-23
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 1

Query:    1 NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYL-SAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAMV 306
            NLP D VP ADFDAPV+ +DN KDSSATAIV SAL E++  TG+  YL  A+++L S +L++ Y+   ATDG+Q+ILR + A WG+   G+V  DYF+LE+MV
Sbjct:  209 NLPDDNVPYADFDAPVD-SDNPKDSSATAIVTSALFELFELTGEPTYLEKAQEFLTSLLLSSTYFDSSATDGWQAILRNSAAAWGDEAVGSVTADYFLLESMV 310

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: R9PSV9_AGAAL (Putative unsaturated glucuronyl hydrolase n=4 Tax=Agarivorans TaxID=261825 RepID=R9PSV9_AGAAL)

HSP 1 Score: 89.7 bits (221), Expect = 5.990e-19
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 1

Query:   19 VPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAM 303
            VP +DFDAP++  DN +DSSATAIVASAL+E+Y  T   KYL  A++ L+++ T  Y   D  + YQSIL + + KWGE E G +FGDYF +EA+
Sbjct:  304 VPYSDFDAPID-DDNPRDSSATAIVASALIELYKITQQEKYLNDAQQMLASLSTPKYLAMD--NNYQSILLKGSEKWGEPEVGTIFGDYFFIEAL 395

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: UPI00200F5605 (glycoside hydrolase family 88 protein n=1 Tax=Agarivorans sp. TSD2052 TaxID=2937286 RepID=UPI00200F5605)

HSP 1 Score: 89.4 bits (220), Expect = 7.980e-19
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1

Query:   13 DGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAM 303
            D +P ADFDAP++   N +DSSATAIVASAL+E+Y  T + KYL  AE  L+++ T ++   D    YQSIL + + KWGE E G +FGDYF +EA+
Sbjct:  296 DFIPYADFDAPID-DKNPRDSSATAIVASALLELYKITNEEKYLVDAESMLTSLATPEFLAMDPE--YQSILLKGSEKWGEEEVGTIFGDYFFIEAL 389

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: A0A6N6ZAI7_9BACT (Putative unsaturated glucuronyl hydrolase n=1 Tax=Puniceicoccaceae bacterium 5H TaxID=2508868 RepID=A0A6N6ZAI7_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 6.830e-18
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1

Query:   13 DGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAM 303
            D VP +DFDAP++ ++N +D+SA AIVASA +E+Y  TG+ KYL  AE  L++ LT   YL   TD Y+S+L + + KWGE E GAV GDY+ +EAM
Sbjct:  294 DYVPYSDFDAPID-SENPRDTSAAAIVASAALELYQTTGEQKYLTAAENMLNS-LTQAPYLSIGTD-YESVLAKGSEKWGEPEVGAVTGDYYFIEAM 387

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: UPI001F1B9B3F (glycoside hydrolase family 88 protein n=1 Tax=Vibrio hippocampi TaxID=654686 RepID=UPI001F1B9B3F)

HSP 1 Score: 83.6 bits (205), Expect = 1.020e-16
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1

Query:   10 SDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAM 303
            +D VP +DFDAP++   N KD+SATA+VAS L+E+Y  T D KYL  AE  L ++   +Y   +    YQ+IL++ + KWGE E G +FGDYF +EA+
Sbjct:  300 NDLVPYSDFDAPIDVR-NPKDTSATAVVASGLLELYHITKDEKYLNDAEAMLISLAKPEYLARETE--YQAILKKGSEKWGEPEVGTIFGDYFFIEAL 394

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BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Match: A0A4Y7ZV10_9GAMM (Glucuronyl hydrolase n=2 Tax=Psychromonas sp. RZ22 TaxID=2555643 RepID=A0A4Y7ZV10_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 1.040e-16
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 1

Query:   10 SDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAWAEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEAM 303
            +D VP ADFDAP++  DN +DSSA AIVASAL+E+Y  T + +YL  A+  L+++ T  Y L +  D Y+SIL + + KWGE E G++FGDYF +EA+
Sbjct:  307 NDLVPYADFDAPLD-KDNPRDSSAAAIVASALIELYKITKEEQYLNDAQAMLNSLATPTY-LANNPD-YESILLKGSEKWGEPEVGSIFGDYFFVEAL 401

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6568.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCI0_9PHAE	7.380e-32	64.42	GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7FQV4_ECTSI	2.810e-25	58.25	Unsaturated glucuronyl hydrolase, family GH88 n=1 ...	[more]
D7FUK3_ECTSI	8.390e-24	53.40	Unsaturated glucuronyl hydrolase, family GH88 n=1 ...	[more]
D7FUJ9_ECTSI	8.650e-24	54.37	Unsaturated glucuronyl hydrolase, family GH88 n=3 ...	[more]
A0A6H5JQV0_9PHAE	3.720e-23	55.34	GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
R9PSV9_AGAAL	5.990e-19	52.63	Putative unsaturated glucuronyl hydrolase n=4 Tax=...	[more]
UPI00200F5605	7.980e-19	51.55	glycoside hydrolase family 88 protein n=1 Tax=Agar...	[more]
A0A6N6ZAI7_9BACT	6.830e-18	52.58	Putative unsaturated glucuronyl hydrolase n=1 Tax=...	[more]
UPI001F1B9B3F	1.020e-16	47.96	glycoside hydrolase family 88 protein n=1 Tax=Vibr...	[more]
A0A4Y7ZV10_9GAMM	1.040e-16	51.02	Glucuronyl hydrolase n=2 Tax=Psychromonas sp. RZ22...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6568	contig	F-serratus_M_contig6568:15733..16290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	109.4
Seed ortholog evalue	1e-21
Seed eggNOG ortholog	2880.D7FQV4
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Glycosyl Hydrolase Family 88
EggNOG OGs	2CYCX@1,2S3MN@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	306
Cds size	306
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932018.6496418-CDS-F-serratus_M_contig6568:15732..15859	1622932018.6496418-CDS-F-serratus_M_contig6568:15732..15859	Fucus serratus male	CDS	F-serratus_M_contig6568 15733..15859 +
1690964104.9263873-CDS-F-serratus_M_contig6568:15732..15859	1690964104.9263873-CDS-F-serratus_M_contig6568:15732..15859	Fucus serratus male	CDS	F-serratus_M_contig6568 15733..15859 +
1622932018.6657515-CDS-F-serratus_M_contig6568:16111..16290	1622932018.6657515-CDS-F-serratus_M_contig6568:16111..16290	Fucus serratus male	CDS	F-serratus_M_contig6568 16112..16290 +
1690964104.9411223-CDS-F-serratus_M_contig6568:16111..16290	1690964104.9411223-CDS-F-serratus_M_contig6568:16111..16290	Fucus serratus male	CDS	F-serratus_M_contig6568 16112..16290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6568.17539.1	prot_F-serratus_M_contig6568.17539.1	Fucus serratus male	polypeptide	F-serratus_M_contig6568 15733..16290 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6568:15733..16290+
coding sequence from alignment at F-serratus_M_contig6568:15733..16290+

protein sequence of mRNA_F-serratus_M_contig6568.17539.1

>prot_F-serratus_M_contig6568.17539.1 ID=prot_F-serratus_M_contig6568.17539.1|Name=mRNA_F-serratus_M_contig6568.17539.1|organism=Fucus serratus male|type=polypeptide|length=102bp
NLPSDGVPPADFDAPVNATDNGKDSSATAIVASALVEIYAETGDSKYLAW
AEKYLSAVLTADYYLPDATDGYQSILRRATAKWGETERGAVFGDYFMLEA
MV

mRNA from alignment at F-serratus_M_contig6568:15733..16290+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6568.17539.1 ID=mRNA_F-serratus_M_contig6568.17539.1|Name=mRNA_F-serratus_M_contig6568.17539.1|organism=Fucus serratus male|type=mRNA|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig6568:15733..16290+ (Fucus serratus male)
AATCTGCCGAGCGATGGAGTCCCTCCCGCGGACTTCGATGCCCCGGTTAA
TGCCACAGACAACGGGAAGGACAGCTCGGCCACGGCCATTGTCGCTTCCG
CCCTCGTCGAGATATATGCCGAAACCGGTGCGTCGTAACATTTGGAACTT
CGAGTCACGCTGCATCACGAACCGCCAAACGGTGTTGGTCTGATACATAG
CGTGGCACCTTGCCTTCTTACTGAATGAAAACATATTATGTAAAATCATT
AAATGTGGTTCAAGTTTATTCGTTTTTATTTTCATCGCTGTTGTCATCTC
GTTTCACGGTTAATAAGTTAAACTGTTGACGGTCACTCTGCCGTTTGCTG
CCTTCTCCGAAAAATCTACGCGCGGTCAGGGGACTCGAAGTACCTGGCCT
GGGCGGAAAAATACCTGTCTGCGGTTCTTACCGCCGACTACTACTTGCCT
GACGCCACCGATGGATACCAGTCCATCTTGCGCCGAGCGACGGCAAAGTG
GGGCGAGACGGAGAGGGGCGCCGTTTTCGGTGACTACTTTATGCTCGAGG
CCATGGTA

Coding sequence (CDS) from alignment at F-serratus_M_contig6568:15733..16290+

>mRNA_F-serratus_M_contig6568.17539.1 ID=mRNA_F-serratus_M_contig6568.17539.1|Name=mRNA_F-serratus_M_contig6568.17539.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig6568:15733..16290+ (Fucus serratus male)
AATCTGCCGAGCGATGGAGTCCCTCCCGCGGACTTCGATGCCCCGGTTAA
TGCCACAGACAACGGGAAGGACAGCTCGGCCACGGCCATTGTCGCTTCCG
CCCTCGTCGAGATATATGCCGAAACCGAATCTGCCGAGCGATGGAGTCCC
TCCCGCGGACTTCGATGCCCCGGTTAATGCCACAGACAACGGGAAGGACA
GCTCGGCCACGGCCATTGTCGCTTCCGCCCTCGTCGAGATATATGCCGAA
ACCGGGGACTCGAAGTACCTGGCCTGGGCGGAAAAATACCTGTCTGCGGT
TCTTACCGCCGACTACTACTTGCCTGACGCCACCGATGGATACCAGTCCA
TCTTGCGCCGAGCGACGGCAAAGTGGGGCGAGACGGAGAGGGGCGCCGTT
TTCGGTGACTACTTTATGCTCGAGGCCATGGTAGGGACTCGAAGTACCTG
GCCTGGGCGGAAAAATACCTGTCTGCGGTTCTTACCGCCGACTACTACTT
GCCTGACGCCACCGATGGATACCAGTCCATCTTGCGCCGAGCGACGGCAA
AGTGGGGCGAGACGGAGAGGGGCGCCGTTTTCGGTGACTACTTTATGCTC
GAGGCCATGGTA