mRNA_F-serratus_M_contig6568.17538.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6568.17538.1
Unique NamemRNA_F-serratus_M_contig6568.17538.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 7.040e-43
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:   46 FTGKQLEVLAG-VLSEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSS 357
            F+G QL VL G VL+E+G FTDYT+TDGLW T  D+G++IDQTVWTSGMVAGM+WYQ+E TG+      AEF+C GLEG+E  +DND GFQ+LNSFGLGYRL+ S
Sbjct:   41 FSGAQLTVLTGDVLTEEGVFTDYTETDGLWRTEKDNGNSIDQTVWTSGMVAGMFWYQYEATGDEAMKTAAEFYCSGLEGLESEEDNDTGFQILNSFGLGYRLTGS 145
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.980e-40
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:   46 FTGKQLEVLAG-VLSEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSS 357
            F+G QL VL   VL+++G FTDYT+TDGLW T  D+GD+IDQTVWTSGMVAGM+WYQ+E TG+ T    AEF+C GLEG+E  +DND GFQ+LNSFGLGYRL+ S
Sbjct:   78 FSGAQLTVLTEEVLTKEGVFTDYTETDGLWRTEKDNGDSIDQTVWTSGMVAGMFWYQYEATGDETMKTAAEFYCSGLEGLESEEDNDTGFQILNSFGLGYRLTGS 182
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.150e-38
Identity = 74/111 (66.67%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:   43 DFTGKQLEVLAG-VLSEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSSLRD 372
            DF G+QL VL   VL E   FT YTD DG W TV D+GD ID TVWTSGMVAGM+WYQ+E TG   W   AE   EGLEGVE LDDNDLGFQ LNSFGLGYRL  +SS +D
Sbjct:   10 DFAGQQLTVLKDDVLVENYIFTSYTDEDGQWITVKDNGDVIDLTVWTSGMVAGMFWYQYEATGQNIWRTYAEDMQEGLEGVELLDDNDLGFQTLNSFGLGYRLVGTSSFKD 120
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.550e-18
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  187 MVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSSLRD 372
            MVAGM WYQ+E TG + W   AE   EGLEG+E LDDNDLGFQ LNSFGLGYRL  ++S +D
Sbjct:    1 MVAGMCWYQYEATGQSIWQTYAEDMQEGLEGIEVLDDNDLGFQTLNSFGLGYRLVGTTSFKD 62
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.770e-17
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  187 MVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSSLRD 372
            MVAGM+WYQ+E T  + W   AE   EGLEGVE LDDNDLGFQ LNSFGLGYRL    S ++
Sbjct:    1 MVAGMFWYQYEATCASKWKTYAEDIQEGLEGVELLDDNDLGFQTLNSFGLGYRLVGKGSFKE 62
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: UPI001F1B9B3F (glycoside hydrolase family 88 protein n=1 Tax=Vibrio hippocampi TaxID=654686 RepID=UPI001F1B9B3F)

HSP 1 Score: 82.8 bits (203), Expect = 4.530e-16
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   85 SEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSS 363
            ++  TFT YTD DG WE   D         W SG V G++WY   +T + +W +KAEF+ EG+       DND GFQV +SFGLGY +   +S
Sbjct:   57 NDNETFTAYTDVDGEWEQEPDRN-------WCSGFVPGIFWYLNAMTADQSWQKKAEFWTEGVRSRAYATDNDTGFQVFDSFGLGYTIGGVTS 142
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: UPI00200F5605 (glycoside hydrolase family 88 protein n=1 Tax=Agarivorans sp. TSD2052 TaxID=2937286 RepID=UPI00200F5605)

HSP 1 Score: 79.3 bits (194), Expect = 7.730e-15
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   55 KQLEVLAGVLSE-QGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSS 363
            K   +    LS+ +  FT YTD+DG W T  D         W SG V G++WY   LT +  W ++A+F+ +G+       DND GFQ+ +SFGLGY L  +++
Sbjct:   41 KSTNLAINALSDNKENFTAYTDSDGQWITEPDRN-------WCSGFVPGIFWYLNALTNDEVWQQRAKFWTDGVRSRAYATDNDTGFQIFDSFGLGYTLGGNAT 137
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: A0A4Y7ZV10_9GAMM (Glucuronyl hydrolase n=2 Tax=Psychromonas sp. RZ22 TaxID=2555643 RepID=A0A4Y7ZV10_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 2.840e-14
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:    7 YGGTDCETDTFTDFTGKQLEVLA--GVLSEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSS 363
            Y   + +  +  D    + + LA   + ++   FTDYTDTDG W+T +          W SG V G++WY   +T +  W  +A  + EG+       DND GFQ+ +SFGLGY +   ++
Sbjct:   36 YAAQNTQYKSVMDLIESKSKGLAVNSLKNDHELFTDYTDTDGEWDTKN-------SRTWCSGFVPGIFWYLSVMTEDKEWKNRAVSWTEGVRARSYATDNDTGFQIFDSFGLGYTIGGENT 149
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: A0A2G6TJ91_9FLAO (Unsaturated chondroitin disaccharide hydrolase n=5 Tax=Flavobacterium TaxID=237 RepID=A0A2G6TJ91_9FLAO)

HSP 1 Score: 70.1 bits (170), Expect = 1.450e-11
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  160 IDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLE--GVEELDDNDLGFQVLNSFGLGYRLSSSSSLRD 372
            +D   WTSG   G  WY +E TG+  W ++A+ F E L+   V + +D+DLGFQ+ NSFG GYRL+ + + +D
Sbjct:   67 VDYKDWTSGFWPGELWYLYEATGDKKWEKEADKFSEFLKPLSVSKANDHDLGFQIFNSFGNGYRLTKNPAYKD 139
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BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Match: R9PSV9_AGAAL (Putative unsaturated glucuronyl hydrolase n=4 Tax=Agarivorans TaxID=261825 RepID=R9PSV9_AGAAL)

HSP 1 Score: 69.3 bits (168), Expect = 2.810e-11
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   55 KQLEVLAG--VLSEQGTFTDYTDTDGLWETVDDDGDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDNDLGFQVLNSFGLGYRLSSSSS 363
             + E+LA   + S +  FT YT+  G W+             W SG + G++WY   L+ N  W + AE + EG+       DND GFQ+ NSFGLGY +    S
Sbjct:   46 SKSELLASEALNSNKHWFTAYTNEAGKWQHEYSKN-------WCSGFIPGIFWYLNALSNNGQWQQYAEHWTEGVRSRAYATDNDTGFQIFNSFGLGYTMGKKPS 143
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6568.17538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHN8_ECTSI7.040e-4366.67Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5KCI0_9PHAE1.980e-4066.67GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FUJ9_ECTSI1.150e-3866.67Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5JQV0_9PHAE1.550e-1866.13GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQV4_ECTSI6.770e-1764.52Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
UPI001F1B9B3F4.530e-1643.01glycoside hydrolase family 88 protein n=1 Tax=Vibr... [more]
UPI00200F56057.730e-1537.50glycoside hydrolase family 88 protein n=1 Tax=Agar... [more]
A0A4Y7ZV10_9GAMM2.840e-1432.23Glucuronyl hydrolase n=2 Tax=Psychromonas sp. RZ22... [more]
A0A2G6TJ91_9FLAO1.450e-1143.84Unsaturated chondroitin disaccharide hydrolase n=5... [more]
R9PSV9_AGAAL2.810e-1135.24Putative unsaturated glucuronyl hydrolase n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6568contigF-serratus_M_contig6568:12105..14058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.2e-34
Seed eggNOG ortholog2880.D8LHN8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6568.17538.1prot_F-serratus_M_contig6568.17538.1Fucus serratus malepolypeptideF-serratus_M_contig6568 12105..14058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932018.5568967-CDS-F-serratus_M_contig6568:12104..121471622932018.5568967-CDS-F-serratus_M_contig6568:12104..12147Fucus serratus maleCDSF-serratus_M_contig6568 12105..12147 +
1690964104.8738759-CDS-F-serratus_M_contig6568:12104..121471690964104.8738759-CDS-F-serratus_M_contig6568:12104..12147Fucus serratus maleCDSF-serratus_M_contig6568 12105..12147 +
1622932018.5750062-CDS-F-serratus_M_contig6568:12820..129591622932018.5750062-CDS-F-serratus_M_contig6568:12820..12959Fucus serratus maleCDSF-serratus_M_contig6568 12821..12959 +
1690964104.884033-CDS-F-serratus_M_contig6568:12820..129591690964104.884033-CDS-F-serratus_M_contig6568:12820..12959Fucus serratus maleCDSF-serratus_M_contig6568 12821..12959 +
1622932018.5887754-CDS-F-serratus_M_contig6568:13194..132551622932018.5887754-CDS-F-serratus_M_contig6568:13194..13255Fucus serratus maleCDSF-serratus_M_contig6568 13195..13255 +
1690964104.89285-CDS-F-serratus_M_contig6568:13194..132551690964104.89285-CDS-F-serratus_M_contig6568:13194..13255Fucus serratus maleCDSF-serratus_M_contig6568 13195..13255 +
1622932018.6034517-CDS-F-serratus_M_contig6568:13512..135841622932018.6034517-CDS-F-serratus_M_contig6568:13512..13584Fucus serratus maleCDSF-serratus_M_contig6568 13513..13584 +
1690964104.9017208-CDS-F-serratus_M_contig6568:13512..135841690964104.9017208-CDS-F-serratus_M_contig6568:13512..13584Fucus serratus maleCDSF-serratus_M_contig6568 13513..13584 +
1622932018.6188717-CDS-F-serratus_M_contig6568:13995..140581622932018.6188717-CDS-F-serratus_M_contig6568:13995..14058Fucus serratus maleCDSF-serratus_M_contig6568 13996..14058 +
1690964104.9115162-CDS-F-serratus_M_contig6568:13995..140581690964104.9115162-CDS-F-serratus_M_contig6568:13995..14058Fucus serratus maleCDSF-serratus_M_contig6568 13996..14058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6568.17538.1

>prot_F-serratus_M_contig6568.17538.1 ID=prot_F-serratus_M_contig6568.17538.1|Name=mRNA_F-serratus_M_contig6568.17538.1|organism=Fucus serratus male|type=polypeptide|length=126bp
IGYGGTDCETDTFTDFTGKQLEVLAGVLSEQGTFTDYTDTDGLWETVDDD
GDAIDQTVWTSGMVAGMYWYQFELTGNATWAEKAEFFCEGLEGVEELDDN
DLGFQVLNSFGLGYRLSSSSSLRDAY
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mRNA from alignment at F-serratus_M_contig6568:12105..14058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6568.17538.1 ID=mRNA_F-serratus_M_contig6568.17538.1|Name=mRNA_F-serratus_M_contig6568.17538.1|organism=Fucus serratus male|type=mRNA|length=1954bp|location=Sequence derived from alignment at F-serratus_M_contig6568:12105..14058+ (Fucus serratus male)
ATCGGCTACGGCGGGACGGATTGTGAAACCGACACATTCACGGGTGCGTT
TCACAAGTGTGTGTTCGTGTATTTGAATTTTTTTTCGGCATCATACTTCG
GCACCACCGCTGTTGAACAAGTTTCGTAACCGATCAACGAAGTGGGCTGT
TGGCTAGCGCAAAATTATATATTGGTCTCATTTTTTTCGAGAGGGGGTAG
TGACACGGAACCATGGCTTGTTTAAGGGAACTGAGGAGTCATCCCCTCAC
CGTGAATCTTAACCTAGTCCGGTCGCAACTAATCGAAAGTCACTACTTCA
TGAGCTCGTGAACTCTGTAACCAGTTCATGACATTCGGTCTATCTTAACC
TACGGTCTCTCTATCGACAGACCTGCCATTTTTTATGTTCGTTCATGGCG
GGCTGATGCGAAAATCACTTCGTCGTTTTTACTGGATCGCGGCAGCTGTA
CTTCCTCTCACCAGAGGTTCCCTCCACAAGTATGATCTCCATATATTGTG
TGGCAACTTTCCTCTTGGTTGACGAAATAGTACGGAGCAATACCCTCACG
ACTCTGCAGAGGACGGTCCTCTTTTCTTCGCGAAGAGTCAGTCGGCGTAC
CTTATGCGACGGCGCTGCCTCGCTCGTGGATGCTTACCTCTCTTCCTCCT
GCTGCCGCTGTACACCCCGCGTGTTATGTTATCTTCGTTGACATGGGCAT
ACTGCGTCAATTCAAGATTTCACGGGAAAGCAACTCGAGGTGCTAGCAGG
CGTGCTCAGTGAGCAGGGCACGTTTACTGACTACACCGACACGGATGGTC
TTTGGGAGACGGTAGATGATGACGGAGATGCCATCGACCAGACAGTGTGG
ACAAGGTATATATAGAGTGTATACAGAGTACATGCGGATCCCCGCTGATT
CCGCTTAAACTTGCTGCGTGGTGACGAGTCATCTTCATTCCCCTGCACTT
CGAAAGCGCCGCTACTGTTGTTCTTCCGAGAGGGTAGAGTTTTCTTCGTT
CTCGGTGTTGCCTCTGCCCCTGTCATGACCAACAGCACCACTTGTACTAT
TTCTCCTTACCCGTCTCGTTTTGTTTTCCGTCGCCTGCAGCGGAATGGTC
GCCGGCATGTACTGGTACCAGTTCGAGCTCACGGGAAACGCCACATGGGC
GGTAAGAGAAGGAGTCTTGCTCCGTCGCCGCCGCTGCCTGTTTTCGACTT
GGACAGTTGTACACGAGGCCGCGCAAGATACAGTCGGCATTTGGCCGCCC
TTACGTACCACTTTCCCACGACGCTGTAGAATCCACCATCAGGTTTCTTC
GACCGAGCTTTAGTAACAGCGTGTACGAGAGCACGTCGTTGAACGATTAT
GTATGTTCCCTGAACGATTATGTATGTTCCCTATTATTCGTGCAAATCAA
TGCCACAGGAGAAAGCCGAATTCTTCTGTGAAGGCCTTGAAGGCGTGGAG
GAGTTGGATGACAACGATCTTGGTTTCCAGGCGAGAGATGCGGGCATGTC
CACGTGTTCGTGTCCTGAGGGGCGCGTTGTCTGCGAACTATTATATAATT
CTAGAATTATTTTAGCGTGGTCTTCTTACATCCATCACGAGGTCACAACA
AAGGGAGAATGCTAAGGTTCAAACATTCCCACGTGACGGACGTTTCAGCC
CACAAGCGAGGTCAAAGGGGACGACGGGATGGAGAAAACGTATTTGCATT
CTTTGTGGGAAATTATAGCTGAAATAGAATTTCCTCTCATCGGACCTACG
TGGCTAACGATCAGGAAGCTGCCCCGCAATGCTGCGTCTCGTGCATTTAC
AATGCCTTCCAATGCATCTCATGCACTCATCATCTACTTGGTGTGACACT
CGCGTAACGGAAAGCATTGCATGCACCGCTGGCATTTGCAGGTACTCAAC
TCCTTCGGTCTTGGTTACAGGCTCTCGTCGTCCAGCTCTCTCCGTGATGC
TTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6568:12105..14058+

>mRNA_F-serratus_M_contig6568.17538.1 ID=mRNA_F-serratus_M_contig6568.17538.1|Name=mRNA_F-serratus_M_contig6568.17538.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig6568:12105..14058+ (Fucus serratus male)
ATCGGCTACGGCGGGACGGATTGTGAAACCGACACATTCACGGATCGGCT
ACGGCGGGACGGATTGTGAAACCGACACATTCACGGATTTCACGGGAAAG
CAACTCGAGGTGCTAGCAGGCGTGCTCAGTGAGCAGGGCACGTTTACTGA
CTACACCGACACGGATGGTCTTTGGGAGACGGTAGATGATGACGGAGATG
CCATCGACCAGACAGTGTGGACAAGATTTCACGGGAAAGCAACTCGAGGT
GCTAGCAGGCGTGCTCAGTGAGCAGGGCACGTTTACTGACTACACCGACA
CGGATGGTCTTTGGGAGACGGTAGATGATGACGGAGATGCCATCGACCAG
ACAGTGTGGACAAGCGGAATGGTCGCCGGCATGTACTGGTACCAGTTCGA
GCTCACGGGAAACGCCACATGGGCGCGGAATGGTCGCCGGCATGTACTGG
TACCAGTTCGAGCTCACGGGAAACGCCACATGGGCGGAGAAAGCCGAATT
CTTCTGTGAAGGCCTTGAAGGCGTGGAGGAGTTGGATGACAACGATCTTG
GTTTCCAGGAGAAAGCCGAATTCTTCTGTGAAGGCCTTGAAGGCGTGGAG
GAGTTGGATGACAACGATCTTGGTTTCCAGGTACTCAACTCCTTCGGTCT
TGGTTACAGGCTCTCGTCGTCCAGCTCTCTCCGTGATGCTTACGTACTCA
ACTCCTTCGGTCTTGGTTACAGGCTCTCGTCGTCCAGCTCTCTCCGTGAT
GCTTAC
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