mRNA_F-serratus_M_contig6563.17536.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6563.17536.1
Unique NamemRNA_F-serratus_M_contig6563.17536.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6563.17536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6563contigF-serratus_M_contig6563:15512..16066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size528
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6563.17536.1prot_F-serratus_M_contig6563.17536.1Fucus serratus malepolypeptideF-serratus_M_contig6563 15512..15912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932017.8417957-CDS-F-serratus_M_contig6563:15511..156501622932017.8417957-CDS-F-serratus_M_contig6563:15511..15650Fucus serratus maleCDSF-serratus_M_contig6563 15512..15650 -
1690964104.6157176-CDS-F-serratus_M_contig6563:15511..156501690964104.6157176-CDS-F-serratus_M_contig6563:15511..15650Fucus serratus maleCDSF-serratus_M_contig6563 15512..15650 -
1622932017.861815-CDS-F-serratus_M_contig6563:15679..159121622932017.861815-CDS-F-serratus_M_contig6563:15679..15912Fucus serratus maleCDSF-serratus_M_contig6563 15680..15912 -
1690964104.6253762-CDS-F-serratus_M_contig6563:15679..159121690964104.6253762-CDS-F-serratus_M_contig6563:15679..15912Fucus serratus maleCDSF-serratus_M_contig6563 15680..15912 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932017.8791065-UTR-F-serratus_M_contig6563:15912..160661622932017.8791065-UTR-F-serratus_M_contig6563:15912..16066Fucus serratus maleUTRF-serratus_M_contig6563 15913..16066 -
1690964104.634462-UTR-F-serratus_M_contig6563:15912..160661690964104.634462-UTR-F-serratus_M_contig6563:15912..16066Fucus serratus maleUTRF-serratus_M_contig6563 15913..16066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6563.17536.1

>prot_F-serratus_M_contig6563.17536.1 ID=prot_F-serratus_M_contig6563.17536.1|Name=mRNA_F-serratus_M_contig6563.17536.1|organism=Fucus serratus male|type=polypeptide|length=124bp
MCLSLRKRHHPLTTKRVAMKVAATRHVTATLLRLFHNRLSVVALTTRLPS
TEETRGRRRSDLLPTLPGPPPSSMEETGGTSAVGPPSLFSPDLLRRLRRR
RVGASAVGPRWSHSPDLLRLRRRR
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mRNA from alignment at F-serratus_M_contig6563:15512..16066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6563.17536.1 ID=mRNA_F-serratus_M_contig6563.17536.1|Name=mRNA_F-serratus_M_contig6563.17536.1|organism=Fucus serratus male|type=mRNA|length=555bp|location=Sequence derived from alignment at F-serratus_M_contig6563:15512..16066- (Fucus serratus male)
GTTGGAAGAAACAGCGGCAAACAGCTATCGGCATGTCCGGCGGGAGACCA
TCCTCGGAAAAAACGCTAAACCCCTATATGAAAATCTGCGCGACAGAGAT
GAAAACTAGGAAAATGCAGTAGAGTGCAATCGAGGTGCCACCCGCGGTCG
GATCATGTGCCTGTCGCTCAGGAAAAGACATCACCCCTTGACCACAAAAC
GCGTAGCGATGAAGGTGGCAGCGACAAGACACGTCACGGCTACTCTTCTT
CGCCTCTTCCATAATCGTCTTTCCGTCGTTGCCCTCACCACCCGCCTCCC
GTCTACGGAGGAGACGCGGGGGCGTCGGCGGTCGGACCTCCTTCCCACAC
TCCCCGGACCTCCTCCGTCGTCTATGGAGGAGACGGGGCTCTGCCAACTC
GTCTTCTTCTCCTCAGGGGGACGTCGGCGGTCGGACCTCCTTCCCTCTTC
TCCCCGGACCTCCTTCGTCGTCTACGGAGGAGACGGGTGGGGGCGTCGGC
GGTCGGTCCTCGCTGGTCTCATTCCCCCGACCTCCTCCGTCTACGGAGGA
GACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6563:15512..16066-

>mRNA_F-serratus_M_contig6563.17536.1 ID=mRNA_F-serratus_M_contig6563.17536.1|Name=mRNA_F-serratus_M_contig6563.17536.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig6563:15512..16066- (Fucus serratus male)
ATGTGCCTGTCGCTCAGGAAAAGACATCACCCCTTGACCACAAAACGCGT
AGCGATGAAGGTGGCAGCGACAAGACACGTCACGGCTACTCTTCTTCGCC
TCTTCCATAATCGTCTTTCCGTCGTTGCCCTCACCACCCGCCTCCCGTCT
ACGGAGGAGACGCGGGGGCGTCGGCGGTCGGACCTCCTTCCCACACTCCC
CGGACCTCCTCCGTCGTCTATGGAGGAGACGGGATGTGCCTGTCGCTCAG
GAAAAGACATCACCCCTTGACCACAAAACGCGTAGCGATGAAGGTGGCAG
CGACAAGACACGTCACGGCTACTCTTCTTCGCCTCTTCCATAATCGTCTT
TCCGTCGTTGCCCTCACCACCCGCCTCCCGTCTACGGAGGAGACGCGGGG
GCGTCGGCGGTCGGACCTCCTTCCCACACTCCCCGGACCTCCTCCGTCGT
CTATGGAGGAGACGGGGGGGACGTCGGCGGTCGGACCTCCTTCCCTCTTC
TCCCCGGACCTCCTTCGTCGTCTACGGAGGAGACGGGTGGGGGCGTCGGC
GGTCGGTCCTCGCTGGTCTCATTCCCCCGACCTCCTCCGTCTACGGAGGA
GACGGGGGGACGTCGGCGGTCGGACCTCCTTCCCTCTTCTCCCCGGACCT
CCTTCGTCGTCTACGGAGGAGACGGGTGGGGGCGTCGGCGGTCGGTCCTC
GCTGGTCTCATTCCCCCGACCTCCTCCGTCTACGGAGGAGACGG
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