mRNA_F-serratus_M_contig656.17530.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE) HSP 1 Score: 275 bits (702), Expect = 5.560e-81 Identity = 171/318 (53.77%), Postives = 188/318 (59.12%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGC----GRVGGGFSQEELKDLFILKTGTSSDTFDKLRRRIPL----------LRLGDDAHEELSSPEFD-RHDGS----------------MSRKGWREYNGPSDIADLALRRALHRESPGFGEDCDSVRGVSASAAASGPEVTFVREVKRG 863
VVV SNFTSALDVL LAERN WGF RLDGGT +N RQ LVDRFNRA DLFLFFLSA+AGGVGLNLVGANRIVL+DSDWNPATDDQAMARVWRLGQTKEV MYRL+STGTLEE+I+QRQIFKGALYDLIHD+ND S G+ G GFSQEELK+LF+LK T SDT+DKLRR +R G E E R DG + + W +Y GPS + D ALR AL E+ G VTFVREVKRG
Sbjct: 748 VVVASNFTSALDVLETLAERNSWGFLRLDGGTTTNERQNLVDRFNRASPEDLFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVCMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGRGFSQEELKELFVLKAETRSDTYDKLRRGRAAATPRAAGAAGVREGGRYQEVTLEREVGARGDGEEDGWQGPTAAAAPVVDVEEQAWEDYVGPSAVVDKALRLALLEEATGTPSQVGG--SXXXXXXXXXXVVTFVREVKRG 1063
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI) HSP 1 Score: 272 bits (695), Expect = 4.160e-80 Identity = 163/292 (55.82%), Postives = 184/292 (63.01%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGC---------GRVGGGFSQEELKDLFILKTGTSSDTFDKLRR----RIPLLRLGDDAHE----ELSSPEFD---RHDG----------------SMSRKGWREYNGPSDIADLALRRALHRESPG 770
VVV SNFTSALDVL LAERN WGF RLDGGT +NARQ LVDRFNRA DLFLF+LS +AGGVGLNLVGANRIVL+DSDWNPATDDQAMARVWRLGQTKEVSMYRL+STGTLEE+I+QRQIFKGALYDLIHD+ND S G+ G GFSQEELK+LF+L+T T SDT+DKLRR P AHE + +PE + R DG ++ + W +Y GPS + D ALR AL E G
Sbjct: 778 VVVASNFTSALDVLETLAERNAWGFLRLDGGTTTNARQNLVDRFNRASPEDLFLFYLSTKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVSMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGRGFSQEELKELFVLRTETRSDTYDKLRRGRAAATPTAAGAASAHEGGRYQEVTPEREAGARGDGEEDGGRGATAAAAPVVAVEEEAWEDYGGPSAVVDKALRLALLEEPTG 1069
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A7S1FQD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQD2_9STRA) HSP 1 Score: 166 bits (421), Expect = 5.990e-45 Identity = 98/199 (49.25%), Postives = 118/199 (59.30%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKT-GTSSDTFDKL 596
VVV+SNFTS LD+L E W FQRLDG T S RQ +VD FNR + F F LSARAGG GLNLVGA+R+++YD DWNPATD Q MAR++R GQTK ++YRL +TGT+EE +YQRQI KG L + + AS +G S GR F+ EE+KD F LK SDT KL
Sbjct: 135 VVVSSNFTSVLDILARHLEMRGWTFQRLDGSTCSEKRQEMVDVFNRTSAEQNFCFLLSARAGGCGLNLVGASRLIMYDPDWNPATDLQTMARIYRTGQTKPTTIYRLFTTGTVEEIVYQRQIQKGNLASAVSEKT--------VASTNGG--------------SGNGGRSSSSFTAEEIKDCFDLKDEDVKSDTQRKL 311
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A2K1K7S9_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7S9_PHYPA) HSP 1 Score: 173 bits (438), Expect = 7.230e-45 Identity = 95/200 (47.50%), Postives = 125/200 (62.50%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKLRR 602
VVV SNFT LD++ + W + RLDG T ++ RQ LVD+ N GD+F+F LS++AGG GLNL+GANR+VL+D DWNPATD QA+AR+WR GQ K V +YRL+STG++EE IYQRQI KG + +A+++GD K S +G FS+EELK+LF L T+ DTFD + R
Sbjct: 861 VVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSGV-GDVFVFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDSQAIARIWREGQLKPVLIYRLLSTGSIEEKIYQRQIMKGGM----------------SAAVEGDADVHTKKSN-----------IGRHFSKEELKELFTLNLATNCDTFDLISR 1032
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A7S2W8P1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8P1_9STRA) HSP 1 Score: 169 bits (429), Expect = 9.710e-44 Identity = 93/199 (46.73%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGD-LFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKL 596
VV+ SNFT+ALD+ +A+ + W + RLDG T RQ LVDR NR GD LFLF LS+ AGGVGLNLVGA+R+VL+D+DWNPA D Q MARVWR GQ + V +YRL+ TGT+EE +YQRQ+ K L + DA PS G FSQ+EL+DL L ++ +TFD++
Sbjct: 594 VVLVSNFTTALDLFEAMADHHGWQYVRLDGSTPQQERQALVDRCNRRVPGDNLFLFLLSSHAGGVGLNLVGASRLVLFDTDWNPAVDKQVMARVWRNGQRRPVFIYRLLCTGTIEEKMYQRQLSKDELSCAVEDAGGPSQ---------------------------------GRFSQDELRDLLTLNASSNCETFDRM 759
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A2P6NR07_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NR07_9EUKA) HSP 1 Score: 165 bits (418), Expect = 2.720e-42 Identity = 98/199 (49.25%), Postives = 123/199 (61.81%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSG-DLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKL 596
+V+ SN T +LD++ L +R W + RLDG T +++RQ LVD+FN G D+FL LS +AGGVGLNL+GANR+VLYDSDWNPA D QAMARVWR GQTK V +YRL+STGT+EE I+QRQI K L + I +DG S ++ S FS+EELKD+F T SDT D L
Sbjct: 603 IVIISNSTKSLDMISRLCDRQKWRYLRLDGSTPNHSRQKLVDQFNSKDGGHDVFL--LSTKAGGVGLNLIGANRLVLYDSDWNPAHDRQAMARVWRDGQTKTVYIYRLLSTGTIEEKIFQRQIAKTGLSNNI---------------VDGKASEKKNS-----------------FSKEELKDIFSYSQETCSDTHDLL 767
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: UPI001F03D033 (DNA repair and recombination protein RAD54-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03D033) HSP 1 Score: 164 bits (415), Expect = 5.500e-42 Identity = 101/249 (40.56%), Postives = 133/249 (53.41%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKLRRRIPLLRLGDDAHEELSSPEFDRHDGSMSRKGWREYNGPSDIADLALRRA 749
VV+ SN+T LD+ L + F RLDG RQ +VDRFN GD F+F LS++AGG GLNL+GANR+V++D DWNPA D+QAMARVWR GQ K+V +YRL+STGT+EE I+QRQ K AL + D + V FS E+L+DLF L TSSDT DK + R + ++ + PE + +S W N + DLAL++A
Sbjct: 578 VVLVSNYTQTLDLFEKLCRLRRYQFVRLDGSMTIRKRQKIVDRFNDPLGGD-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKKVFIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEED---------------------------------VARHFSMEDLRDLFKLNENTSSDTHDKFKCRRCVNKI-----QVRPPPEGSSCNSDLSE--WNHCNDKKGVEDLALKKA 785
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A7S0RLR1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RLR1_9CHLO) HSP 1 Score: 152 bits (383), Expect = 5.700e-42 Identity = 91/201 (45.27%), Postives = 111/201 (55.22%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKLRRR 605
VVV S +T LD++ ER + RLDG T +AR LV RFN+ +G +FL LS +AGG GLNL+GANR+VL+DSDWNPA D QAMARVWR GQ K V +YRL+ TGT+EE IYQRQ+ K + D + D S+ FT +ELKDLF T DT D L RR
Sbjct: 4 VVVVSGYTRTLDMVQAACEREGASWCRLDGRTPQDARLNLVRRFNQGHAGKVFL--LSTKAGGAGLNLIGANRLVLFDSDWNPANDLQAMARVWRDGQKKAVVIYRLLCTGTIEEKIYQRQLVKTEMADCMGFGADEKSSGQFTP--------------------------------DELKDLFTYNNSTRCDTHDHLTRR 170
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A066VQ34_TILAU (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VQ34_TILAU) HSP 1 Score: 164 bits (415), Expect = 8.240e-42 Identity = 92/199 (46.23%), Postives = 118/199 (59.30%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKLR 599
VVV SNFTS LD++ L ER W RLDG T + RQ LV+ FNR+P+ F+F LSA++GGVGLNL+GANR+VL+DSDWNP+TD QAMAR+ R GQ K +YR++ GT++E IYQRQ+ K L D + DA SS+ + FS EEL+D+F L T S T D L+
Sbjct: 689 VVVVSNFTSTLDIIEFLCERRGWPLLRLDGKTKTETRQELVNEFNRSPASSSFVFLLSAKSGGVGLNLIGANRLVLFDSDWNPSTDKQAMARIHRDGQKKPCFIYRMLLAGTMDEKIYQRQLSKIGLSDSLMDAGTGSSS-----------------------------KASDTFSPEELRDIFTLHKDTPSLTHDLLQ 858
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Match: A0A6A7FTU6_9CRUS (DNA repair and recombination protein RAD54B-like n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FTU6_9CRUS) HSP 1 Score: 164 bits (414), Expect = 1.120e-41 Identity = 98/199 (49.25%), Postives = 120/199 (60.30%), Query Frame = 3
Query: 3 VVVTSNFTSALDVLVCLAERNDWGFQRLDGGTASNARQPLVDRFNRAPSGDLFLFFLSARAGGVGLNLVGANRIVLYDSDWNPATDDQAMARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSAPNFTASIDGDRSGRQKSSQKNRQMSDGCGRVGGGFSQEELKDLFILKTGTSSDTFDKLR 599
VVV SNFTS LD+L L +R D+ F RLDG T + RQPLVD FN S F+F LS+RAGGVGLNL+GA+RI+LYD DWNPATD QAMARVWR GQT+ V +YRL+ G++EE ++QRQ+ K +L + DA SSA FSQ+ELKDLF + S T D+LR
Sbjct: 748 VVVVSNFTSTLDLLQQLCQRYDYTFLRLDGSTPQHKRQPLVDSFNSKYSKH-FVFLLSSRAGGVGLNLIGASRIILYDIDWNPATDLQAMARVWRDGQTRTVHIYRLLLCGSVEERMFQRQVHKQSLSGAVVDARQSSSAKVV-------------------------------FSQQELKDLFSNRMDGSCLTHDQLR 914 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig656.17530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig656.17530.1 >prot_F-serratus_M_contig656.17530.1 ID=prot_F-serratus_M_contig656.17530.1|Name=mRNA_F-serratus_M_contig656.17530.1|organism=Fucus serratus male|type=polypeptide|length=206bp MARVWRLGQTKEVSMYRLVSTGTLEETIYQRQIFKGALYDLIHDANDPSSback to top mRNA from alignment at F-serratus_M_contig656:270786..272380+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig656.17530.1 ID=mRNA_F-serratus_M_contig656.17530.1|Name=mRNA_F-serratus_M_contig656.17530.1|organism=Fucus serratus male|type=mRNA|length=1595bp|location=Sequence derived from alignment at F-serratus_M_contig656:270786..272380+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig656:270786..272380+ >mRNA_F-serratus_M_contig656.17530.1 ID=mRNA_F-serratus_M_contig656.17530.1|Name=mRNA_F-serratus_M_contig656.17530.1|organism=Fucus serratus male|type=CDS|length=1236bp|location=Sequence derived from alignment at F-serratus_M_contig656:270786..272380+ (Fucus serratus male)back to top |