mRNA_F-serratus_M_contig6539.17517.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL) HSP 1 Score: 57.0 bits (136), Expect = 3.030e-7 Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 37 WESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKAVE 285
W DSG T H++H S AS G SI V N +P++G GKIE+E+ + T +M+ + DV Y P L +L+S AV+
Sbjct: 229 WTIDSGCTRHVTHESQWFSTIS-ASNG-SITVGVKNQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A6A3YSJ5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YSJ5_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 1.890e-6 Identity = 27/76 (35.53%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 37 WESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLM 264
W DSG T H++H SN + G SI V N +P++G G++E+E+ +R K + + DV Y P L +L+
Sbjct: 129 WTIDSGCTRHVTHEAQWFSNISAS--GGSITVGGKNQIPIEGIGRVELEVIDSKRNMKKLILHDVLYAPQLHFSLL 202
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA) HSP 1 Score: 53.5 bits (127), Expect = 5.280e-6 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 34 EWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKA 279
+W D+GAT H++ TR Y+ + SI+ A L +G G IE + +R++DV YVPG+SRNL S + A
Sbjct: 295 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA) HSP 1 Score: 53.5 bits (127), Expect = 5.660e-6 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 34 EWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKA 279
+W D+GAT H++ TR Y+ + SI+ A L +G G IE + +R++DV YVPG+SRNL S + A
Sbjct: 268 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.860e-6 Identity = 27/83 (32.53%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 37 WESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKAVE 285
W DSG T H+SH ++ + G SI V N +P++G G++E+E+ + T + + + V Y P L +L+S AV+
Sbjct: 205 WTIDSGCTRHVSHESQWFTDITTS--GGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVK 285
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A2P4XU07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU07_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.610e-5 Identity = 27/83 (32.53%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 37 WESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKAVE 285
W D G T H++H S+ A+ G SI V N +P++G G++E+E+ + T + + + V Y P L +L+S AV+
Sbjct: 153 WTIDPGCTRHVTHESQWFSDI--AASGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQNLILHGVLYAPQLQFSLLSVPAAVK 233
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A6A4DDX6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DDX6_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 2.920e-5 Identity = 28/83 (33.73%), Postives = 44/83 (53.01%), Query Frame = 1
Query: 37 WESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMSTVKAVE 285
W DSG T H++H SN + G SI V N +P++G G++E+E+ + K + + V Y P L +L+S AV+
Sbjct: 138 WTIDSGCTRHVTHEAQWFSNISAS--GGSITVGGKNQIPIEGIGRVELEVIDYKGNMKKLILHGVLYAPQLHFSLLSLSAAVK 218
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A6L2NS58_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NS58_TANCI) HSP 1 Score: 51.2 bits (121), Expect = 3.350e-5 Identity = 28/82 (34.15%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 22 DEKEEWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMS 267
DE E +SG ++HM+H R + ++K G S+++ D T + G GK+ ++L ++DV+YVPGL R+L+S
Sbjct: 136 DEMTELVMNSGESYHMTHMRDFLYDFKVVDGG-SVRLGDNRTCTIKGTGKVNIQL----HNGSSFILEDVSYVPGLRRSLIS 212
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A699TK29_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699TK29_TANCI) HSP 1 Score: 50.4 bits (119), Expect = 4.070e-5 Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 22 DEKEEWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMS 267
DE E DSG ++HM+H R + ++K G S+++ D T + G GK++++L ++D YVPGL R+L+S
Sbjct: 119 DEMTELVMDSGGSYHMTHKRDFLYDFKVVDGG-SVRLGDNRTCTIKGTGKVKIQL----YNGSSFILEDFRYVPGLRRSLIS 195
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Match: A0A699KJT9_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KJT9_TANCI) HSP 1 Score: 50.8 bits (120), Expect = 4.400e-5 Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 22 DEKEEWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLPVDGFGKIEVELDQPRRTTKMVRMDDVAYVPGLSRNLMS 267
DE E +SG ++HM+H R + ++K G S+++ D T + G GK+ ++L + DV+YVPGL R+L+S
Sbjct: 118 DEMTELVMNSGGSYHMTHRRDFLYDFKVVDGG-SVRLGDNRTCTIKGTGKVNIQL----HNGSSFILKDVSYVPGLKRSLIS 194 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6539.17517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6539.17517.1 >prot_F-serratus_M_contig6539.17517.1 ID=prot_F-serratus_M_contig6539.17517.1|Name=mRNA_F-serratus_M_contig6539.17517.1|organism=Fucus serratus male|type=polypeptide|length=106bp MVGTARSDEKEEWESDSGATFHMSHTRAGMSNYKKASPGTSIKVADGNTLback to top mRNA from alignment at F-serratus_M_contig6539:2411..2728+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6539.17517.1 ID=mRNA_F-serratus_M_contig6539.17517.1|Name=mRNA_F-serratus_M_contig6539.17517.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig6539:2411..2728+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6539:2411..2728+ >mRNA_F-serratus_M_contig6539.17517.1 ID=mRNA_F-serratus_M_contig6539.17517.1|Name=mRNA_F-serratus_M_contig6539.17517.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig6539:2411..2728+ (Fucus serratus male)back to top |