mRNA_F-serratus_M_contig6521.17510.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6521.17510.1
Unique NamemRNA_F-serratus_M_contig6521.17510.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6521.17510.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 7.890e-10
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  259 HNLAEVDTSPSASPMKNQVVALIGAVYYLRGPLVVLNALTCTIEIL 396
            + L EVD SPSAS MKNQVV LI AV YLRGPL+VLN+LTC I +L
Sbjct:   34 YRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 79
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BLAST of mRNA_F-serratus_M_contig6521.17510.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.400e-5
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  268 AEVDTSPSASPMKNQVVALIGAVYYLRGPLVVLNALTCTIEILLPG 405
            AE D +  +S +KNQ + LI AV YLRGPL+ +N LTCT E+L  G
Sbjct:   33 AEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEMLFGG 78
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6521.17510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPN5_ECTSI7.890e-1071.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA2.400e-554.35Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6521contigF-serratus_M_contig6521:28267..29316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Exons2
Model size586
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6521.17510.1prot_F-serratus_M_contig6521.17510.1Fucus serratus malepolypeptideF-serratus_M_contig6521 28445..28552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932013.0591128-UTR-F-serratus_M_contig6521:28266..284441622932013.0591128-UTR-F-serratus_M_contig6521:28266..28444Fucus serratus maleUTRF-serratus_M_contig6521 28267..28444 -
1690964102.3872876-UTR-F-serratus_M_contig6521:28266..284441690964102.3872876-UTR-F-serratus_M_contig6521:28266..28444Fucus serratus maleUTRF-serratus_M_contig6521 28267..28444 -
1622932013.09851-UTR-F-serratus_M_contig6521:28552..285931622932013.09851-UTR-F-serratus_M_contig6521:28552..28593Fucus serratus maleUTRF-serratus_M_contig6521 28553..28593 -
1690964102.4115875-UTR-F-serratus_M_contig6521:28552..285931690964102.4115875-UTR-F-serratus_M_contig6521:28552..28593Fucus serratus maleUTRF-serratus_M_contig6521 28553..28593 -
1622932013.1169837-UTR-F-serratus_M_contig6521:29057..293161622932013.1169837-UTR-F-serratus_M_contig6521:29057..29316Fucus serratus maleUTRF-serratus_M_contig6521 29058..29316 -
1690964102.4229424-UTR-F-serratus_M_contig6521:29057..293161690964102.4229424-UTR-F-serratus_M_contig6521:29057..29316Fucus serratus maleUTRF-serratus_M_contig6521 29058..29316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932013.0771832-CDS-F-serratus_M_contig6521:28444..285521622932013.0771832-CDS-F-serratus_M_contig6521:28444..28552Fucus serratus maleCDSF-serratus_M_contig6521 28445..28552 -
1690964102.400702-CDS-F-serratus_M_contig6521:28444..285521690964102.400702-CDS-F-serratus_M_contig6521:28444..28552Fucus serratus maleCDSF-serratus_M_contig6521 28445..28552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6521.17510.1

>prot_F-serratus_M_contig6521.17510.1 ID=prot_F-serratus_M_contig6521.17510.1|Name=mRNA_F-serratus_M_contig6521.17510.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MKNQVVALIGAVYYLRGPLVVLNALTCTIEILLPG*
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mRNA from alignment at F-serratus_M_contig6521:28267..29316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6521.17510.1 ID=mRNA_F-serratus_M_contig6521.17510.1|Name=mRNA_F-serratus_M_contig6521.17510.1|organism=Fucus serratus male|type=mRNA|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig6521:28267..29316- (Fucus serratus male)
CATCGGCCCAGTTATATACTCCGGATTATTTTTCCTCCGATAGTTTTGTA
GTATTGCACACGTCCCCTGTACCATTAGCAGCAGGTGTGGGAGAAGATAG
GCGCACACAAATTGGTCCAAATACCTGTAAGGGCAGCACCTTGAGGACTT
CTGGCCTTGCCCCGGCAGACTCTCGGCAGTAACGCCATCGGTACGCTAAC
CCAATGGTGGTTAGCGTTATGCATAAACGGACACCGTCGCGGAAAGCGGG
AGGAGTTCCGTGAGTAAGCACCAGATTCAGTTATAGTGTGGAAAATGAAC
TGACTGACGTGGGACGGGAGGGGCTCGAATGGGCACAGGAAGCAATCGTT
TTAACTGTTCAGCTGACAACGAGCTGGATTGGCAACCCTACTTACCTGTT
CGATTCAGACACTCTACTTCACAAATGATCATACCTAAATTCTGCACCAG
TATGTTTCATTTTACACTTACACACTTCATACGCGACATCATGTCTGCAA
ACAGTATACTTGTAAAAGCATACCAGGTACAGCTTTTGATAGTCGCCGTG
TGTGGTAATGCTCCGCAAAATGAATGGATACTATTATTGGGACATGTGTT
TTCCGCTGGTGATGAGCTACAACCAGCAGATCCCTCCAAACACGCGCCCA
CCGACCACCCCTGCCCTCCCTTGCGGCACCAATGTCTCTGCGCGAACGTT
CATGCCCCGCGTCGCCGCGACAGATAATCTGGCGGAGGTGGACACGTCCC
CTTCTGCCTCCCCCATGAAAAATCAGGTCGTTGCCCTCATCGGCGCCGTC
TACTACCTGCGCGGGCCCCTGGTTGTCCTTAACGCTCTTACGTGCACCAT
CGAGATTCTCCTGCCAGGATAGGCTTCGACATTTTTATTCGCCGGAAGGC
TGGTGGTATTCTTTTCGGTAGTCAGACGCGTGGAACTCGTTATTAGCCGG
GAAGCTGGTGGTATTCTTTTCGGCGGTCGGACGCGCCGAACTTTCGCCGA
AAAAGGAAAAATAGATATTTCTTTCCTCGCTCTTGGATGCCGTTGCTGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6521:28267..29316-

>mRNA_F-serratus_M_contig6521.17510.1 ID=mRNA_F-serratus_M_contig6521.17510.1|Name=mRNA_F-serratus_M_contig6521.17510.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig6521:28267..29316- (Fucus serratus male)
ATGAAAAATCAGGTCGTTGCCCTCATCGGCGCCGTCTACTACCTGCGCGG
GCCCCTGGTTGTCCTTAACGCTCTTACGTGCACCATCGAGATTCTCCTGC
CAGGATAGATGAAAAATCAGGTCGTTGCCCTCATCGGCGCCGTCTACTAC
CTGCGCGGGCCCCTGGTTGTCCTTAACGCTCTTACGTGCACCATCGAGAT
TCTCCTGCCAGGATAG
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