mRNA_F-serratus_M_contig651.17503.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5KL08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL08_9PHAE) HSP 1 Score: 198 bits (503), Expect = 4.570e-56 Identity = 106/229 (46.29%), Postives = 137/229 (59.83%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG-WWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGSWCLQSH 685
VSV RCK C NP + D P+ +PA LS+YVLHSF +K PPFH T +DV + ++ I+GHQLVRGR G LAV+Y THW GL++ SWERE DL +HIL YW Q + N YR R+ A R R + + YL G LV + TW ++F +P+ A W+K G WW G + A D Y VRF DDPGP + L E+ Y+T ++ V GSWCL+ H
Sbjct: 154 VSVLRCKPCRNPYETDDRPQSMPAELSRYVLHSFGDKCPPFHVTPDDVSAPVGRLKVDYISGHQLVRGRRGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGLIGAHQGDSY---IVRFLDDPGPTVLPLPEDLYSTALNAVCGSWCLEKH 379
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE) HSP 1 Score: 200 bits (509), Expect = 1.330e-53 Identity = 106/229 (46.29%), Postives = 139/229 (60.70%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG-WWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGSWCLQSH 685
VSV RCK C NP + D P+ +PA LS+YVLHSF +K PPFH T +DV + ++ I+GHQLVRGR G LAV+Y THW GL++ SWERE DL +HIL YW Q + N YR R+ A R R + + YL G LV + TW ++F +P+ A W+K G WW G++ A D Y VRF DDPGP+ + L E+ Y+T ++ V GSWCL+ H
Sbjct: 1950 VSVLRCKPCRNPYETDDRPQSMPAELSRYVLHSFGDKCPPFHVTPDDVSAPVGRLKVDYISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGRIGAHQGDSY---IVRFLDDPGPSVLPLPEDLYSTALNAVCGSWCLEKH 2175
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5KZ08_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ08_9PHAE) HSP 1 Score: 179 bits (453), Expect = 6.320e-48 Identity = 100/223 (44.84%), Postives = 134/223 (60.09%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG-WWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGS 667
VSV RCK C NP + D+P+ LPA LS+YVLHSF +K PPFH T +DV ++++ I+GHQLVRGR G LAV+Y+THW GL++ SWERE DL F +HIL YW Q + + YR R+ A + RN+ + Y+ G LV +TW +F +P+ A W+K G WW G++ A Y VRF DDPGP+ + L +T +D V GS
Sbjct: 314 VSVLRCKPCRNPVETDDLPQSLPAELSRYVLHSFGDKCPPFHVTADDVSVPVGRLEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGHHTYRVGRTRAAQQELARNRGERYVHPGDDLVLNATWLHRFSTSPLPVGARLWYKACDGLWWTGRIGAHQGGSY---IVRFLDDPGPSVLPLPAHLNSTGLDAVCGS 533
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE) HSP 1 Score: 160 bits (404), Expect = 9.920e-40 Identity = 86/190 (45.26%), Postives = 112/190 (58.95%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG-WWLGQVKAWDRDIY 568
VSV RCK C NP + D P+ +PA LS+YVLHSF +K PPFH T +DV + ++ I+GHQLVRGR G LAV+Y THW GL++ SWERE DL +HIL YW Q + N YR R+ A R R + + YL G LV + TW ++F +P+ A W+K WW G++ A D Y
Sbjct: 936 VSVLRCKPCRNPYETDDRPQSMPAELSRYVLHSFGDKCPPFHVTPDDVSAPVGRLKVDYISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDRLWWTGRIGAHQGDSY 1125
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5KRJ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ7_9PHAE) HSP 1 Score: 158 bits (400), Expect = 3.270e-39 Identity = 84/188 (44.68%), Postives = 118/188 (62.77%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQGWWLGQVKAWDRDI 565
VSV RCK+C +P + D+P+ LPA LS+YVLHSF +KSPPFH T +DV ++++ +GHQLVRGR G LAV+Y+THW GL++ SWERE DL F +HIL W Q + N YR R+ A R R++ ++YL G LV ++TW + F +P+ A W+K G L + +A R++
Sbjct: 820 VSVLRCKLCRDPYETDDLPQSLPAELSRYVLHSFGDKSPPFHVTADDVSVPVGRLEVDYTSGHQLVRGRSGVLAVLYQTHWLGLTTPSWERESDLDRFRRHILLRWFREVCQSKQGNRAYRVARTRAAQRELARSRGEHYLPHGADLVLHATWLRGFSTSPLPVGARLWYKASDG--LARTRAAQREL 1005
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.020e-37 Identity = 83/175 (47.43%), Postives = 109/175 (62.29%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG 526
VSV RCK C NP + D+P+ LPA LS+YVLHSF +K PPFH T +DV ++++ I+GHQLVRGR G LAV+Y+THW GL++ SWERE DL F +HIL Y Q + N YR R+ A R RN+ + YL G LV +TW ++F +P+ A W+K G
Sbjct: 1224 VSVLRCKPCRNPYETDDLPQSLPAELSRYVLHSFGDKCPPFHVTADDVSVPVGRLEVDYISGHQLVRGRSGALAVLYQTHWVGLTTPSWERESDLDLFRRHILLYLSREACQSKQGNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGARLWYKARDG 1398
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5KDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL4_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.630e-36 Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLA 499
VSV RCK C NP + D+P+ LPA LS+YVLHSF + PPFH T +DV ++++ I+GHQLVRGR G LAV+Y+THW GL++ SWERE DL F +HIL YW Q + N YR R+ A R RN+ + YL G LV +TW ++F +P+ A
Sbjct: 806 VSVLRCKPCRNPYETDDLPQSLPAELSRYVLHSFGDICPPFHVTADDVSVPVGRLEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKRDNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGA 971
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE) HSP 1 Score: 149 bits (377), Expect = 4.090e-36 Identity = 82/184 (44.57%), Postives = 111/184 (60.33%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWW-KNHQGWWLGQVKA 550
VSV RCK C NP + D+P+ LPA LS+ VLHSF +K PPFH T +DV ++++ I+GHQLVRGR G LAV+Y+THW GL++ SWERE DL F +HIL YW Q + N YR R+ A R RN+ + Y G V +TW ++F +P+ A W + +W+ Q +A
Sbjct: 1554 VSVLRCKPCRNPYETDDLPQSLPAELSRDVLHSFGDKCPPFHVTADDVSVPVGRLEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGNRTYRVARTRAAQRELARNRGERYFPPGADFVLSATWLRRFSTSPLPIGARLWAARTSFDFWMTQAQA 1737
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5JZB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB2_9PHAE) HSP 1 Score: 142 bits (359), Expect = 8.850e-34 Identity = 80/187 (42.78%), Postives = 108/187 (57.75%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRIPLLAFFWWKNHQG-WWLGQVKAWDR 559
VSV RCK C P + D+P+ LPA LS +VLHSF +K PPF T +DV ++++ I+GHQLVRGR G LAV+Y+THW GL++ SWE E DL F + I+ W Q + N YR R+ A R RN+ + +L G LV TW ++F +P+ A W+K G WW G D+
Sbjct: 906 VSVLRCKPCRYPYETDDLPQSLPAELSHFVLHSFGDKCPPFPVTVDDVSVPVGRLEVDYISGHQLVRGRSGVLAVLYQTHWVGLTTPSWEGESDLDQFRRRIILNWSREACQSKQGNCTYRVARTRAAQRELARNRGERFLPPGADLVLNVTWLRRFSTSPLPVGARLWYKARDGLWWTGGESDLDQ 1092
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Match: A0A6H5K2S7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S7_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.620e-32 Identity = 74/152 (48.68%), Postives = 94/152 (61.84%), Query Frame = 2
Query: 2 VSVDRCKMCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIEKITGHQLVRGRGGKLAVMYETHWEGLSSISWEREIDLRHFSQHILEYWMSTPRQVRGVNSKYRAMRSAQAHRAYWRNQNKYYLEQGYHLVSYST 457
VSV RCK C NP + D P+ +PA LS+YVLHSF +K PPFH T +DV+ + ++ I+GHQLVRGR G LAV+Y THW GL++ SWERE DL +HIL YW Q + N YR R+ A R R + + YL G LV + T
Sbjct: 461 VSVLRCKPCRNPYETDDRPQSMPAELSRYVLHSFGDKCPPFHVTPDDVLAPVGRLKVDYISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHET 612 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig651.17503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig651.17503.1 >prot_F-serratus_M_contig651.17503.1 ID=prot_F-serratus_M_contig651.17503.1|Name=mRNA_F-serratus_M_contig651.17503.1|organism=Fucus serratus male|type=polypeptide|length=242bp MCHNPSDDLDMPKYLPAGLSKYVLHSFAEKSPPFHPTTEDVVKSGIPVDIback to top mRNA from alignment at F-serratus_M_contig651:378515..379578+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig651.17503.1 ID=mRNA_F-serratus_M_contig651.17503.1|Name=mRNA_F-serratus_M_contig651.17503.1|organism=Fucus serratus male|type=mRNA|length=1064bp|location=Sequence derived from alignment at F-serratus_M_contig651:378515..379578+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig651:378515..379578+ >mRNA_F-serratus_M_contig651.17503.1 ID=mRNA_F-serratus_M_contig651.17503.1|Name=mRNA_F-serratus_M_contig651.17503.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig651:378515..379578+ (Fucus serratus male)back to top |