mRNA_F-serratus_M_contig6507.17499.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6507.17499.1
Unique NamemRNA_F-serratus_M_contig6507.17499.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6507.17499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6507contigF-serratus_M_contig6507:3641..6308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size248
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6507.17499.1prot_F-serratus_M_contig6507.17499.1Fucus serratus malepolypeptideF-serratus_M_contig6507 3641..6308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932011.854584-CDS-F-serratus_M_contig6507:3640..37331622932011.854584-CDS-F-serratus_M_contig6507:3640..3733Fucus serratus maleCDSF-serratus_M_contig6507 3641..3733 +
1690964101.8641305-CDS-F-serratus_M_contig6507:3640..37331690964101.8641305-CDS-F-serratus_M_contig6507:3640..3733Fucus serratus maleCDSF-serratus_M_contig6507 3641..3733 +
1622932011.8723366-CDS-F-serratus_M_contig6507:4190..42651622932011.8723366-CDS-F-serratus_M_contig6507:4190..4265Fucus serratus maleCDSF-serratus_M_contig6507 4191..4265 +
1690964101.87559-CDS-F-serratus_M_contig6507:4190..42651690964101.87559-CDS-F-serratus_M_contig6507:4190..4265Fucus serratus maleCDSF-serratus_M_contig6507 4191..4265 +
1622932011.8865514-CDS-F-serratus_M_contig6507:6230..63081622932011.8865514-CDS-F-serratus_M_contig6507:6230..6308Fucus serratus maleCDSF-serratus_M_contig6507 6231..6308 +
1690964101.8860679-CDS-F-serratus_M_contig6507:6230..63081690964101.8860679-CDS-F-serratus_M_contig6507:6230..6308Fucus serratus maleCDSF-serratus_M_contig6507 6231..6308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6507.17499.1

>prot_F-serratus_M_contig6507.17499.1 ID=prot_F-serratus_M_contig6507.17499.1|Name=mRNA_F-serratus_M_contig6507.17499.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MRLWPLNIGDLGDDLFNSVSVALWGCTDDDKIRLVTVHAWGLSCSPNGPV
YVLPRPVLQNLVAKVLEHDEKLLYDVWKKVFH
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mRNA from alignment at F-serratus_M_contig6507:3641..6308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6507.17499.1 ID=mRNA_F-serratus_M_contig6507.17499.1|Name=mRNA_F-serratus_M_contig6507.17499.1|organism=Fucus serratus male|type=mRNA|length=2668bp|location=Sequence derived from alignment at F-serratus_M_contig6507:3641..6308+ (Fucus serratus male)
ATGCGGCTGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAA
CTCAGTTTCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAGTGAGTG
AAAGATTGTACGTCGAATGTCCACATGCCGTATGTAGTGGTTTAAAGAAA
AATCTGAACGCATCTAGACCTTCTGAGCATACTGTACTGTACTGTATCCC
AGTTAGGGGGGAAAATGTCAAAACGTTTAGGCAGGGTCATAGGCTGCAAA
TACGAAACCTCTTCATGGCATTTAAATGGGTTCCCCGATGATAGTAACAT
TGGGTCAACAGTATAATGCTGGGGGGAGAAACCCACCGTTATGCTGTACA
TTTATATTAAACGCCGTGCAGGGACACCAGACAAAAACAGAAACGAAAAC
ATTTTGAGTACTCAATTAAAATAGGTTTATAAATATATACAGTAAACTGT
GCTCTTTCAGTATCGACCCTTATCCAATACGGTATGGCTTTTTGCCCCAC
CGGTGGGTTTTCCTCTTGTTTACCCCACCACCTGGATCTCGCGTCAGAAG
ATACGGTTGGTCACAGTACATGCATGGGGTCTATCGTGCAGCCCAAACGG
TCCTGTCTACGTGCTGCCACGGCCGGTGGGGTGGTTGGTGTTTTCTGGTA
TGTTTGGCTATTTGCCCTACCGGTATGGGGATTCCGCTGTACCCCACCGG
CCGTAACAGCACGTAGACAAGGCCGTTTGTGCTGCACGATAGACCTCATG
ATAGCCCTGCAACGCGCCAACACACTCATGCATGTACTGTGACCAACCGT
GTCTTCTGACGCGAGATCCAGGTGGTGGGGTAAACAAGAGGAAAACCCAC
TGGTGGGGCAAATAACCATTTCGTATCCAATAAGGACTTAAAGTCTAGAA
CACAAGCAATATTACAATATTGTCATTGGTAAAGAGAAATACATTTTCCC
AGGTACATTTTACAAAAATCCTCAGGAACATTGTTCTCCATGTATAAAAT
TGTTGTTTCGTAGGCTAAAAATACAAGCTCTTCATGACATCACTATGAAA
TGAATAACCATGCAGGGACACCCAAGCGCAACATTTACCAAAAGCGCGAT
AAGCTGGGGATACAACTCAAATTGTTACATTGGGTCTAAGATCAGATGAT
GATAGGTGACAATAAAGGAAGTCTAAATTATATTCTAGATATAGAGGTGA
TGATGGAAAATTGTCCTATATTATATTACTATACGGTACATACTTACCAG
CAGTAGCGCTTGTGGTGCTTGTAGTTCATTCACACTGTATCTTACGTTTG
TGACAGCATGAGTAAGGTGGTCATCACATATAGCAAGAGTATGGATCAAC
CGGGTAAGGTCACCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATTAA
TATTTCCCTGTCTGCGTTCGCGCCTGAGAATTTGCTGTTCGGCAGTCCCG
TCACGCGTCGGCCTGGTCATCTCCATACTCAGGCTGAATCTGGTGCTTAC
TTACGAGATTCCTCCCGAGTTCCGCGACGGCGTCCATTTATTTGTTTTAG
CCGCCATACGCCATCGGGTCAATCCCGAGAGAGTCCGCCGGCACAGGACC
AGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGATCACCAT
GGACCAATTCATGTGCGCCTCTCTTTCCCACACCCACTATTGGTATGAAG
TGGGCATGTTGAAAGTACCGGCGATGTTAAAGACCACTGCTACGGCAGAA
GCGGGGAGCATGTGGCAGGTTAAAAAATATGAAAACAAAACAAAACAAAA
AACAACCATAAATGTACGCTAGTCGTGTTATGAAAAAAAGGCGATGGACA
AAATCAGGTACTGCATATCCAGGTGTTTCCAGGACAAAATCGAGTATAAT
AGCATAATACTGGTAGCATAATAGCATAATAGCATAATAGCATGTTTTTA
CGTGCGGAAAGGTTCGGGGAGGCTTTTGCTAGATTAAGCAGCAGCTCCGT
TTGAACAAAAGTAGACAAAAACGGACACTTCCCAAACTTGGTAGGTACAA
CCGGGCATATACCCGGATGTTCTGTAGACAAAATCGGGCAATATCATACT
GTTGATCCCCCTTTAATTTAAAGCACATTTATTTGTAAAAAAACAAACAA
AGGATGGAGTTGTGAAGAGCAAGCAGAAGGTTTTCGCTGGCTGATCCCGA
TAAACAGGGACCTTCCCATTCTTGGAATCACCAACCCATGTCCGATTTTG
TCTAACAAACGCCCGGCCGGGTACAGGGGTACAGGGGTACACTGTACCCG
ATTTTGTCCATGAACTCTAAACAAAACTATTATACTGTGTCGTGCTACGT
GACGGATCAAGTGTGAATTTGAAGAGGCGAAAACAGAGAGACGTCGCTCG
AACACTACCTACTATTGATATATTAATACTAATTATGTAGTAATAGGGGT
ACACTGCACAAAGCTACTCTCAGCAGTGGGGTTACAGTTACAAATACAGT
TACCAGGTACATTACAGTTACATTTTTACTCGTACGTAACGTTACAAAGT
TACATTACACACGATACTGCTGTACTGGTACAAACTACAGGTGCTCCAGA
ACTTGGTGGCGAAGGTTCTCGAACACGACGAGAAGCTTCTGTACGACGTG
TGGAAGAAGGTCTTCCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6507:3641..6308+

>mRNA_F-serratus_M_contig6507.17499.1 ID=mRNA_F-serratus_M_contig6507.17499.1|Name=mRNA_F-serratus_M_contig6507.17499.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6507:3641..6308+ (Fucus serratus male)
ATGCGGCTGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAA
CTCAGTTTCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAATGCGGC
TGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAACTCAGTT
TCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAATACGGTTGGTCAC
AGTACATGCATGGGGTCTATCGTGCAGCCCAAACGGTCCTGTCTACGTGC
TGCCACGGCCGATACGGTTGGTCACAGTACATGCATGGGGTCTATCGTGC
AGCCCAAACGGTCCTGTCTACGTGCTGCCACGGCCGGTGCTCCAGAACTT
GGTGGCGAAGGTTCTCGAACACGACGAGAAGCTTCTGTACGACGTGTGGA
AGAAGGTCTTCCACGTGCTCCAGAACTTGGTGGCGAAGGTTCTCGAACAC
GACGAGAAGCTTCTGTACGACGTGTGGAAGAAGGTCTTCCAC
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