mRNA_F-serratus_M_contig6501.17497.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6501.17497.1
Unique NamemRNA_F-serratus_M_contig6501.17497.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6501.17497.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 7.780e-12
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:  259 SKAWMGAGVSADDGVSASVRGGFPPAWKVSLTVKAKAETKGS---ERLPRRGGLGGDDRGDVLPLPRGLDASIKELGISKMEALLKAKFSRMKEGVYHKGVDDD 561
            S AW+ AG                P+WKV    +  A+   +   + LPR+GGLG + R  V PLP G+D S+K+LG+  +EA+LK KFS+ K+GV+    +DD
Sbjct:  528 STAWINAGEGDGSAXXXXXXXXSLPSWKVPKAEQETAKANSAPVPDWLPRQGGLGSESRRGVAPLPEGIDTSVKKLGVKGLEAMLKDKFSKTKDGVF--AAEDD 629
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6501.17497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S8_ECTSI7.780e-1238.46DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6501contigF-serratus_M_contig6501:26426..28764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog2880.D7G4S8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0327@2759
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size569
Cds size567
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6501.17497.1prot_F-serratus_M_contig6501.17497.1Fucus serratus malepolypeptideF-serratus_M_contig6501 26426..28764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932011.683003-CDS-F-serratus_M_contig6501:26425..265191622932011.683003-CDS-F-serratus_M_contig6501:26425..26519Fucus serratus maleCDSF-serratus_M_contig6501 26426..26519 -
1690964101.7734172-CDS-F-serratus_M_contig6501:26425..265191690964101.7734172-CDS-F-serratus_M_contig6501:26425..26519Fucus serratus maleCDSF-serratus_M_contig6501 26426..26519 -
1622932011.7017064-CDS-F-serratus_M_contig6501:27956..280691622932011.7017064-CDS-F-serratus_M_contig6501:27956..28069Fucus serratus maleCDSF-serratus_M_contig6501 27957..28069 -
1690964101.7957978-CDS-F-serratus_M_contig6501:27956..280691690964101.7957978-CDS-F-serratus_M_contig6501:27956..28069Fucus serratus maleCDSF-serratus_M_contig6501 27957..28069 -
1622932011.7165344-CDS-F-serratus_M_contig6501:28404..287641622932011.7165344-CDS-F-serratus_M_contig6501:28404..28764Fucus serratus maleCDSF-serratus_M_contig6501 28405..28764 -
1690964101.8137157-CDS-F-serratus_M_contig6501:28404..287641690964101.8137157-CDS-F-serratus_M_contig6501:28404..28764Fucus serratus maleCDSF-serratus_M_contig6501 28405..28764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6501.17497.1

>prot_F-serratus_M_contig6501.17497.1 ID=prot_F-serratus_M_contig6501.17497.1|Name=mRNA_F-serratus_M_contig6501.17497.1|organism=Fucus serratus male|type=polypeptide|length=189bp
GVEGAERSASIGWDGGEKNERPLFHESRRSDRGPRDMEGFKGREGVGGRG
RGVPRQGQRQTIEVGGRGGYAPTFGEGRESERGSRESKAWMGAGVSADDG
VSASVRGGFPPAWKVSLTVKAKAETKGSERLPRRGGLGGDDRGDVLPLPR
GLDASIKELGISKMEALLKAKFSRMKEGVYHKGVDDDV*
back to top

mRNA from alignment at F-serratus_M_contig6501:26426..28764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6501.17497.1 ID=mRNA_F-serratus_M_contig6501.17497.1|Name=mRNA_F-serratus_M_contig6501.17497.1|organism=Fucus serratus male|type=mRNA|length=2339bp|location=Sequence derived from alignment at F-serratus_M_contig6501:26426..28764- (Fucus serratus male)
GGGGTTGAGGGAGCGGAACGAAGCGCGAGCATCGGGTGGGACGGGGGCGA
AAAGAACGAGCGCCCACTTTTTCATGAAAGCCGACGTAGCGACCGCGGGC
CACGAGACATGGAAGGTTTCAAGGGGCGCGAGGGTGTAGGTGGCCGTGGG
CGGGGGGTCCCGCGGCAGGGTCAGAGGCAAACGATAGAGGTTGGCGGCCG
CGGTGGATATGCGCCCACTTTTGGCGAAGGGCGCGAGTCGGAGAGGGGAT
CACGTGAGTCGAAGGCTTGGATGGGCGCTGGAGTCTCTGCGGACGATGGC
GTCAGCGCAAGCGTCCGAGGCGGGTTTCCTCCGGCGTGGAAGGTGAGCTT
GACCGTCAAGGTTTGGTTTTTCATGGGGCCGGGGGAGGGGGACTTTCAGG
GTGTCAAACCCATCCATCATGCACGGCAGAAGGCTGTAGGAAGTGCCTGT
ACGATCATGAGACGAACGACAGATAGCCCATAGGGTAGTGAGCCCTTCTT
GTCTGGTGTATGTATACCATATACCATATACCAGTATGCGTGTATGGGTG
TTTCTGTGTGTGTGCCTGCTTTTGATTTGTCTAATGTTTTTAATCTGTAA
ACGCGGAGATATTTCATTCTCTAGGCTACTACGGTACTCCCTATGCTGCG
CCTCTGATTTCCGTTCTGACACGCTTCTATGGTTTGTTCAAGCAGGCGAA
GGCTGAGACGAAGGGTTCGGAGAGGCTGCCACGGCGAGGAGGCCTGGGAG
GTGATGATCGCGGGGACGTGTTACCCCTCCCGAGAGGTCTTGACGCCAGC
ATTAAGGAGTGAGATGATACAACACCATACAGTAGCGCGTTCCAGCACAC
ACGGTGCCATTTAACCTTGGTCGCAATCGAAAATACAGATATAAGAAGCG
TAGGGGTGAAACGGGGGATACGAACCGGTTGGTTTTCCCTTTCTTGGTAA
CCCCGGGTGGGATAGGAAAAGTTGCACCAGGTGAAACCCATGACGTAGAT
TGGCCTCGTGGGCAGAACGCGAGAAGAAAAAAAAACTATAAAACATGCTG
GCGTATTCGGAAAAGACCTGTTGGAGGTGCTACGAATACCACAAGCATCG
TTGCTTCGTACAGATCAACATGGTACATGTGGAGCAGAGGATTAGCTTTA
GGCCGAAACCGGGGAAAAGGCATGCAGGTCTCGATAGCGCCCTGATATCC
TTGGCAACCCCTCGCCCCCCCACCTTTTCTTGGCCTGGGGATCATCGCCC
GCTCTCTCCGAAGGGTGAAAGCTGTGCGATTTCCTGGAGTAACCAGAAGG
AGAGAGCCACAATATATGTTCTTATTTTGAGTCTACGGTTTACCTATTAA
CACCGAAGTAAAGTTACTTATCAACACCGAGCTGTACAGATACCAGGAAA
GACCTAAATCGTCTGGATGGCGCGGAATGGTCGAGTGATTCGCCAAACAC
AAGCAAGGGGATATCGTGGTTCTATCCCCGGTTTCAGTAGGGAAGTGTAG
CAAACCAACCTCTCCCCGAGAGGGGCCTGTTCATCCCCTCGCCCCTGAGA
GGACTGTTCAGTTCACCGGGGGATTGATCGAGCTTGTTCCCTGTAGTAAG
TGTTTTGATACCGTCACCTCTCCGAAATCAGGACCAGATCCGTGGCATCC
TCCCCCCCCCCATCCACCCCTTCTCGACGAATCACACTTCCTTTACTTAA
CGCTTATCAATAGTGAGATCTTGAAGAGCCCGCCCGGTGGGGATAACCGC
TACCGTCTGTACTATACACGGCTCATGGTCGCCGCTGTACATATCGCTCG
AGCGTAAGAGCTCCTGATTGCAGTATAATGGATTTATGTTCCTACTTGCG
CGCTCGTGTAGCGCTCGGCAAAAATCTCGGAAAAGGTCGTCCATTTGACG
GCAGATAGCTCCGCGAAAGTACGATTTGCCGTACCGTAGATTAGCTGCGA
AAGCGGCGGCGCATTTTGCAGGACGTGAAGAAAATCCTGGAACGCGGCTC
TAGCGTTGCTAATGCTCAGCAGGGCCATTCGGCTTTTAATTTGCAGGGCG
CGGTAGAGATTGTCGCTGCTGCAAGCGAGAGATGCATCTTGCCATCGCTA
TCTGTCCCTCGAACGTAAAAGCAACAACTCTGCTCTGCCGTCCAGTTGTT
TTTTCCCGACCCGTGAACGCCAGGAATGTCGCGTGAAACTCCCGCCCTCT
CTCCATCACGATGCTGCGCTGTGTGCCGATGCGGTCGTTCTCCAGGCTGG
GGATTTCTAAAATGGAGGCGTTATTGAAGGCAAAGTTTTCCAGGATGAAA
GAAGGCGTGTACCATAAGGGGGTCGACGACGACGTGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6501:26426..28764-

>mRNA_F-serratus_M_contig6501.17497.1 ID=mRNA_F-serratus_M_contig6501.17497.1|Name=mRNA_F-serratus_M_contig6501.17497.1|organism=Fucus serratus male|type=CDS|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig6501:26426..28764- (Fucus serratus male)
GGGGTTGAGGGAGCGGAACGAAGCGCGAGCATCGGGTGGGACGGGGGCGA
AAAGAACGAGCGCCCACTTTTTCATGAAAGCCGACGTAGCGACCGCGGGC
CACGAGACATGGAAGGTTTCAAGGGGCGCGAGGGTGTAGGTGGCCGTGGG
CGGGGGGTCCCGCGGCAGGGTCAGAGGCAAACGATAGAGGTTGGCGGCCG
CGGTGGATATGCGCCCACTTTTGGCGAAGGGCGCGAGTCGGAGAGGGGAT
CACGTGAGTCGAAGGCTTGGATGGGCGCTGGAGTCTCTGCGGACGATGGC
GTCAGCGCAAGCGTCCGAGGCGGGTTTCCTCCGGCGTGGAAGGTGAGCTT
GACCGTCAAGGGGGTTGAGGGAGCGGAACGAAGCGCGAGCATCGGGTGGG
ACGGGGGCGAAAAGAACGAGCGCCCACTTTTTCATGAAAGCCGACGTAGC
GACCGCGGGCCACGAGACATGGAAGGTTTCAAGGGGCGCGAGGGTGTAGG
TGGCCGTGGGCGGGGGGTCCCGCGGCAGGGTCAGAGGCAAACGATAGAGG
TTGGCGGCCGCGGTGGATATGCGCCCACTTTTGGCGAAGGGCGCGAGTCG
GAGAGGGGATCACGTGAGTCGAAGGCTTGGATGGGCGCTGGAGTCTCTGC
GGACGATGGCGTCAGCGCAAGCGTCCGAGGCGGGTTTCCTCCGGCGTGGA
AGGTGAGCTTGACCGTCAAGGCGAAGGCTGAGACGAAGGGTTCGGAGAGG
CTGCCACGGCGAGGAGGCCTGGGAGGTGATGATCGCGGGGACGTGTTACC
CCTCCCGAGAGGTCTTGACGCCAGCATTAAGGAGCGAAGGCTGAGACGAA
GGGTTCGGAGAGGCTGCCACGGCGAGGAGGCCTGGGAGGTGATGATCGCG
GGGACGTGTTACCCCTCCCGAGAGGTCTTGACGCCAGCATTAAGGAGCTG
GGGATTTCTAAAATGGAGGCGTTATTGAAGGCAAAGTTTTCCAGGATGAA
AGAAGGCGTGTACCATAAGGGGGTCGACGACGACGTGTGAGCTGGGGATT
TCTAAAATGGAGGCGTTATTGAAGGCAAAGTTTTCCAGGATGAAAGAAGG
CGTGTACCATAAGGGGGTCGACGACGACGTGTGA
back to top