mRNA_F-serratus_M_contig650.17495.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig650.17495.1
Unique NamemRNA_F-serratus_M_contig650.17495.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig650.17495.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.050e-22
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 2 
Query:    5 KNLSLRKLMATMTACAGVFSHSPCNNDAFKAVQQEVNEMGRVLEIVRRNDTRWGSQHAMLDRQLRLYKAIQQYFMQNLGNRTVSNRAPNPTDWLAVQQVVSVLDEAAQLTAQVQGGT 355
            +N ++ KLM  + A  GVFSHS  NND  K +Q+   E   + E++RRNDTRW SQHAM+ R L+L KAI +YF  N  N    NR  +  +W    +V S+LD  A++T ++QG T
Sbjct:   70 ENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENN----NRKLSSREWTVTNEVCSLLDVVAEVTVKIQGAT 182
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BLAST of mRNA_F-serratus_M_contig650.17495.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.020e-22
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 2 
Query:    5 KNLSLRKLMATMTACAGVFSHSPCNNDAFKAVQQEVNEMGRVLEIVRRNDTRWGSQHAMLDRQLRLYKAIQQYFMQNLGNRTVSNRAPNPTDWLAVQQVVSVLDEAAQLTAQVQGGT 355
            +N ++ KLM  + A  GVFSHS  NND  K +Q+   E   + E++RRNDTRW SQHAM+ R L+L KAI +YF  N  N    NR  +  +W    +V S+LD  A++T ++QG T
Sbjct:  398 ENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENN----NRKLSSREWTVTNEVCSLLDVVAEVTVKIQGAT 510
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig650.17495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE3.050e-2244.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.020e-2244.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig650contigF-serratus_M_contig650:376124..376865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932010.3590722-CDS-F-serratus_M_contig650:376123..3763481622932010.3590722-CDS-F-serratus_M_contig650:376123..376348Fucus serratus maleCDSF-serratus_M_contig650 376124..376348 -
1690964101.2010424-CDS-F-serratus_M_contig650:376123..3763481690964101.2010424-CDS-F-serratus_M_contig650:376123..376348Fucus serratus maleCDSF-serratus_M_contig650 376124..376348 -
1622932010.38406-CDS-F-serratus_M_contig650:376706..3768651622932010.38406-CDS-F-serratus_M_contig650:376706..376865Fucus serratus maleCDSF-serratus_M_contig650 376707..376865 -
1690964101.2165713-CDS-F-serratus_M_contig650:376706..3768651690964101.2165713-CDS-F-serratus_M_contig650:376706..376865Fucus serratus maleCDSF-serratus_M_contig650 376707..376865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig650.17495.1prot_F-serratus_M_contig650.17495.1Fucus serratus malepolypeptideF-serratus_M_contig650 376124..376865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig650.17495.1

>prot_F-serratus_M_contig650.17495.1 ID=prot_F-serratus_M_contig650.17495.1|Name=mRNA_F-serratus_M_contig650.17495.1|organism=Fucus serratus male|type=polypeptide|length=128bp
VQEPLITQAHGNNDRVRWRLQSFAVQQRRLQGRSTGGERDGPRLGDCSPQ
RHKVGITARDAGPAAAAIQGYSTVLHAKPGQPHSEQPRPQPDRLASGSTG
RERPRRSGAAHRAGPGGHHAFVGKAIND
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mRNA from alignment at F-serratus_M_contig650:376124..376865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig650.17495.1 ID=mRNA_F-serratus_M_contig650.17495.1|Name=mRNA_F-serratus_M_contig650.17495.1|organism=Fucus serratus male|type=mRNA|length=742bp|location=Sequence derived from alignment at F-serratus_M_contig650:376124..376865- (Fucus serratus male)
GTGCAAGAACCTCTCATTACGCAAGCTCATGGCAACAATGACCGCGTGCG
CTGGCGTCTTCAGTCATTCGCCGTGCAACAACGACGCCTTCAAGGCCGTT
CAACAGGAGGTGAACGAGATGGGCCGCGTCTTGGAGATTGTTCGCCGCAA
CGACACAAGGTGCTCTGTTTAAAGTTGTTGTTCTTGTCTTGCAATGTCTG
CCAAGATAACTAGTACCGGCAGTAAGGTGGCTCTTCTTGGCGGTCGAGGT
TTTCTGTTTCCAGTAGGCAACCTTGGGCGCGTGGCTGCCTCAACATCATT
GTGACTATTTCGATAGTTGTCAAACAGCACATACAGTTTGAATGATTGCT
AAACTCATTTTGGGGTTTTGCTCTTTGGGTTGATCCAAACATAATTACCC
CGTGTGACATCTCGTGCTTTCGCGACACTCCTTCCCGTTTATTGCTCTGT
CCGCGTTAACGCCAGCAAGTCCCCATCACTCCCATCGCCGATTCCTCCTG
ATTTTCCTCTCCAATAGGTGGGGATCACAGCACGCGATGCTGGACCGGCA
GCTGCGGCTATACAAGGCTATTCAACAGTACTTCATGCAAAACCTGGGCA
ACCGCACAGTGAGCAACCGCGCCCCCAACCCGACCGATTGGCTAGCGGTT
CAACAGGTCGTGAGCGTCCTCGACGAAGCGGCGCAGCTCACCGCGCAGGT
CCAGGGGGGCACCATGCCTTCGTGGGCAAGGCGATCAACGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig650:376124..376865-

>mRNA_F-serratus_M_contig650.17495.1 ID=mRNA_F-serratus_M_contig650.17495.1|Name=mRNA_F-serratus_M_contig650.17495.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig650:376124..376865- (Fucus serratus male)
GTGCAAGAACCTCTCATTACGCAAGCTCATGGCAACAATGACCGCGTGCG
CTGGCGTCTTCAGTCATTCGCCGTGCAACAACGACGCCTTCAAGGCCGTT
CAACAGGAGGTGAACGAGATGGGCCGCGTCTTGGAGATTGTTCGCCGCAA
CGACACAAGGTGCAAGAACCTCTCATTACGCAAGCTCATGGCAACAATGA
CCGCGTGCGCTGGCGTCTTCAGTCATTCGCCGTGCAACAACGACGCCTTC
AAGGCCGTTCAACAGGAGGTGAACGAGATGGGCCGCGTCTTGGAGATTGT
TCGCCGCAACGACACAAGGTGGGGATCACAGCACGCGATGCTGGACCGGC
AGCTGCGGCTATACAAGGCTATTCAACAGTACTTCATGCAAAACCTGGGC
AACCGCACAGTGAGCAACCGCGCCCCCAACCCGACCGATTGGCTAGCGGT
TCAACAGGTCGTGAGCGTCCTCGACGAAGCGGCGCAGCTCACCGCGCAGG
TCCAGGGGGGCACCATGCCTTCGTGGGCAAGGCGATCAACGACGTGGGGA
TCACAGCACGCGATGCTGGACCGGCAGCTGCGGCTATACAAGGCTATTCA
ACAGTACTTCATGCAAAACCTGGGCAACCGCACAGTGAGCAACCGCGCCC
CCAACCCGACCGATTGGCTAGCGGTTCAACAGGTCGTGAGCGTCCTCGAC
GAAGCGGCGCAGCTCACCGCGCAGGTCCAGGGGGGCACCATGCCTTCGTG
GGCAAGGCGATCAACGAC
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