mRNA_F-serratus_M_contig650.17493.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig650.17493.1
Unique NamemRNA_F-serratus_M_contig650.17493.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.360e-37
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:    1 DDVPGVVYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAKGGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            DD  GV  A+T +A+ WHR L H+N RSMELLR+KE NGV+++ +++ CDICA+SKSRQ AHP+K+ R TT PM+L+YTD  G  TP AKGG+ YVSK+ D  S MKE+YLL+  SE   +L
Sbjct:  295 DDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRAL 416
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.550e-36
Identity = 67/118 (56.78%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:   13 GVVYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAKGGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            GV +A+T +A+  HRRLGH+N RSM+LLR+KE N V+++ +++ CDICA+SKS Q AHPKK++R TT PM L+YTD+ G  TP AKGG+ YVS + D  SR+KE+YLL+ KSE   +L
Sbjct:   97 GVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRAL 214
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.460e-32
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAK---GGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+++LR+  G GV+Y  ++S C +C ++K +Q  HPK+STR  +RP +L+  D  GP+ PPAK   G + Y  K  DD ++MKEVYLLR KS+  E++
Sbjct:   35 VCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAV 153
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.430e-31
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPA--KGG-YRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+E+LR+  G GV+Y  ++S C +C + K +Q  HPK+STR  +RP +L+  D  GP+ PPA  KGG + Y  K  DD ++MKEVYLLRNKS+  E++
Sbjct:  299 VCFTLVSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNKSDTTEAV 417
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.710e-31
Identity = 51/109 (46.79%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   40 ADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAKGGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            A +WHRR+GH++ RS+++LR+ +GNGVEY G +S CD+CA+  S+QQ HPK+++   +RP +L+ TDL GP +PPA GG+ Y+ K+ D   +  EV+L++ KS   ++L
Sbjct:  266 AALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDAL 374
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.590e-31
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAK---GGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+++L +  G  V+Y  ++S C +C ++K +Q  +PK+STR  +RP +L+  D  GP+TPPAK   G + Y  K  DDC++MKEVYLLR KS+  E++
Sbjct:  142 VCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPAKYKGGSFAYACKITDDCTKMKEVYLLRKKSDTTEAV 260
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.120e-30
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAK---GGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+++LR+  G GV+Y  ++S C +C ++K +Q  HPK+STR  +RP +L+  D  GP+ PPAK   G + Y  K  DD ++MKEVYLLR KS+  E++
Sbjct:   35 VCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAV 153
[Close]
BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5JY69_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY69_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.260e-30
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:   25 ASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAKGG---YRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            A +  AD+WHRRLGH+NPR+ME+LR+    GV+Y G VS CD C ++K ++   PKK++R  T+P +L+  D  GP+ PPAK     Y YV+K  D  +RM+EVYLLR+++E  ++L
Sbjct:  187 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCHITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKAIDIFTRMREVYLLRHRTETTQAL 303
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BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.360e-30
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAK---GGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+++LR+  G GV+Y  ++S C +C ++K +Q  HPK+STR  +RP +L+  D  GP+ PPAK   G + Y  K  DD ++MKEVYLLR KS+  E++
Sbjct:  411 VCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAV 529
[Close]
BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.640e-30
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   19 VYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCDICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAK---GGYRYVSKYADDCSRMKEVYLLRNKSEAAESL 366
            V  +   AD WHRRLGH+N RS+++LR+  G GV+Y  ++S C +C ++K +Q  HPK+STR  +RP +L+  D  GP+ PPAK   G + Y  K  DD ++MKEVYLLR KS+  E++
Sbjct:   35 VCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAV 153
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig650.17493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE1.360e-3757.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.550e-3656.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZ34_9PHAE1.460e-3247.06Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KP59_9PHAE1.430e-3149.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1J1_9PHAE2.710e-3146.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M6_9PHAE8.590e-3146.22gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KCM0_9PHAE2.120e-3047.06Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JY69_9PHAE3.260e-3047.86Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KT84_9PHAE3.360e-3047.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE3.640e-3047.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig650contigF-serratus_M_contig650:179213..179578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog3750.XP_008387235.1
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030863,GO:0030981,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0065003,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903047
EggNOG free text desc.Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome
EggNOG OGs37Q6F@33090,3G87I@35493,4JF2T@91835,COG2801@1,KOG0017@2759,KOG2000@1,KOG2000@2759
COG Functional cat.Z
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932011.4905343-CDS-F-serratus_M_contig650:179212..1795781622932011.4905343-CDS-F-serratus_M_contig650:179212..179578Fucus serratus maleCDSF-serratus_M_contig650 179213..179578 +
1690964101.7307281-CDS-F-serratus_M_contig650:179212..1795781690964101.7307281-CDS-F-serratus_M_contig650:179212..179578Fucus serratus maleCDSF-serratus_M_contig650 179213..179578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig650.17493.1prot_F-serratus_M_contig650.17493.1Fucus serratus malepolypeptideF-serratus_M_contig650 179213..179578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig650.17493.1

>prot_F-serratus_M_contig650.17493.1 ID=prot_F-serratus_M_contig650.17493.1|Name=mRNA_F-serratus_M_contig650.17493.1|organism=Fucus serratus male|type=polypeptide|length=122bp
DDVPGVVYASTADADIWHRRLGHMNPRSMELLRQKEGNGVEYTGTVSDCD
ICALSKSRQQAHPKKSTRTTTRPMKLIYTDLTGPLTPPAKGGYRYVSKYA
DDCSRMKEVYLLRNKSEAAESL
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mRNA from alignment at F-serratus_M_contig650:179213..179578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig650.17493.1 ID=mRNA_F-serratus_M_contig650.17493.1|Name=mRNA_F-serratus_M_contig650.17493.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig650:179213..179578+ (Fucus serratus male)
GACGATGTACCTGGGGTCGTGTACGCCTCCACAGCTGACGCCGACATCTG
GCACCGAAGACTGGGACACATGAATCCCCGCAGCATGGAACTACTTCGCC
AAAAGGAAGGAAATGGGGTGGAGTACACCGGGACCGTGTCCGACTGCGAT
ATCTGTGCACTGTCGAAGAGCAGACAACAGGCACACCCCAAGAAGAGCAC
GCGGACGACCACCAGGCCGATGAAACTCATCTACACGGACCTCACGGGAC
CATTGACGCCTCCCGCGAAAGGAGGATACAGGTACGTCAGTAAGTACGCT
GACGACTGCTCACGCATGAAGGAGGTCTATCTGCTCAGGAACAAGTCCGA
AGCCGCCGAGTCGCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig650:179213..179578+

>mRNA_F-serratus_M_contig650.17493.1 ID=mRNA_F-serratus_M_contig650.17493.1|Name=mRNA_F-serratus_M_contig650.17493.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig650:179213..179578+ (Fucus serratus male)
GACGATGTACCTGGGGTCGTGTACGCCTCCACAGCTGACGCCGACATCTG
GCACCGAAGACTGGGACACATGAATCCCCGCAGCATGGAACTACTTCGCC
AAAAGGAAGGAAATGGGGTGGAGTACACCGGGACCGTGTCCGACTGCGAT
ATCTGTGCACTGTCGAAGAGCAGACAACAGGCACACCCCAAGAAGAGCAC
GCGGACGACCACCAGGCCGATGAAACTCATCTACACGGACCTCACGGGAC
CATTGACGCCTCCCGCGAAAGGAGGATACAGGTACGTCAGTAAGTACGCT
GACGACTGCTCACGCATGAAGGAGGTCTATCTGCTCAGGAACAAGTCCGA
AGCCGCCGAGTCGCTGGACGATGTACCTGGGGTCGTGTACGCCTCCACAG
CTGACGCCGACATCTGGCACCGAAGACTGGGACACATGAATCCCCGCAGC
ATGGAACTACTTCGCCAAAAGGAAGGAAATGGGGTGGAGTACACCGGGAC
CGTGTCCGACTGCGATATCTGTGCACTGTCGAAGAGCAGACAACAGGCAC
ACCCCAAGAAGAGCACGCGGACGACCACCAGGCCGATGAAACTCATCTAC
ACGGACCTCACGGGACCATTGACGCCTCCCGCGAAAGGAGGATACAGGTA
CGTCAGTAAGTACGCTGACGACTGCTCACGCATGAAGGAGGTCTATCTGC
TCAGGAACAAGTCCGAAGCCGCCGAGTCGCTG
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