mRNA_F-serratus_M_contig650.17489.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig650.17489.1
Unique NamemRNA_F-serratus_M_contig650.17489.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig650.17489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig650contigF-serratus_M_contig650:61396..62433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932010.2636979-CDS-F-serratus_M_contig650:61395..617661622932010.2636979-CDS-F-serratus_M_contig650:61395..61766Fucus serratus maleCDSF-serratus_M_contig650 61396..61766 +
1690964101.1738386-CDS-F-serratus_M_contig650:61395..617661690964101.1738386-CDS-F-serratus_M_contig650:61395..61766Fucus serratus maleCDSF-serratus_M_contig650 61396..61766 +
1622932010.2800026-CDS-F-serratus_M_contig650:62355..624311622932010.2800026-CDS-F-serratus_M_contig650:62355..62431Fucus serratus maleCDSF-serratus_M_contig650 62356..62431 +
1690964101.1862607-CDS-F-serratus_M_contig650:62355..624311690964101.1862607-CDS-F-serratus_M_contig650:62355..62431Fucus serratus maleCDSF-serratus_M_contig650 62356..62431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig650.17489.1prot_F-serratus_M_contig650.17489.1Fucus serratus malepolypeptideF-serratus_M_contig650 61396..62431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig650.17489.1

>prot_F-serratus_M_contig650.17489.1 ID=prot_F-serratus_M_contig650.17489.1|Name=mRNA_F-serratus_M_contig650.17489.1|organism=Fucus serratus male|type=polypeptide|length=149bp
LAPESQETTSFRNELLMPSRVPDIKEVLTRFSSDAPPFDELECTARRSRR
LVDGAIRAARTAPSGGSGVAGPGGVRTIGVARTLRAKAAREAAIAGCARP
GTNKAVRAGIVSVLAAPAAVRLTRYVRHNLKEFRRIQLEAVAGLSTFFS
back to top

mRNA from alignment at F-serratus_M_contig650:61396..62433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig650.17489.1 ID=mRNA_F-serratus_M_contig650.17489.1|Name=mRNA_F-serratus_M_contig650.17489.1|organism=Fucus serratus male|type=mRNA|length=1038bp|location=Sequence derived from alignment at F-serratus_M_contig650:61396..62433+ (Fucus serratus male)
CTCGCACCCGAGTCGCAGGAAACTACCTCCTTCAGGAACGAGCTGTTAAT
GCCGTCGAGAGTTCCCGATATTAAGGAGGTGTTGACACGGTTCTCGTCGG
ACGCGCCCCCTTTCGATGAACTTGAGTGCACAGCGAGGCGCAGCCGACGC
CTGGTCGATGGTGCGATCAGAGCGGCGAGGACGGCACCCAGCGGGGGAAG
CGGCGTTGCCGGGCCCGGCGGAGTCAGAACGATCGGCGTAGCGCGTACGT
TGCGTGCGAAGGCGGCGCGGGAGGCGGCGATCGCGGGCTGCGCGCGCCCA
GGGACGAACAAGGCTGTGAGGGCGGGAATAGTCTCGGTCTTGGCGGCTCC
AGCGGCTGTTCGTTTGACAAGGTAAGGAGATAGAGCCGCGCGTAGAAAAG
GCGACACATACGAGAGAAAGCTTCCGCGTAGATCGCAATGCAGTGGAAAA
TGAACCACCCAAAGAATTCCGACTACAGCTGGGTCGGTAAAGAGTTCGAG
CCCCACCCTTGCGAGGGAGAAAGGCCTCGGGGGAAAGAAGACTTTACATT
TGACAGGAAATATAATCACTAGATACTCAAGAGAAGCCAGGGAAGGTAAC
TCTCCTCGATGTGGAAGGAGAGGCAGGTCTTCGAACCCTTCGACCTTATT
CTTTGGAGTCGAAAATTAGCACCCAGACTGTCTAGGTTTTTCTAGGTGGT
CAATTTCCAATTTGGTGTAAAACTTACGCCAACTGTTGCTTACATTCCCT
TTGTCCTGAGAATGTACCGGTTGATATTTCAATTTGTGTGAAACTACTCG
CGTATCTGTCACCCTTCCGTATATATAGGCCACTTACACCTCCAACTATA
TGCCTCGTACATTGAGGTTAGTGTTGGGGTCCTGCGCTCGTTTTTTCCCG
CCCATGCCCACACCCTGGACGCCGCAAGAATGCATGCACATGTTTCCGCC
CGCGCCGTAGGTACGTGCGCCATAACTTAAAAGAATTCCGTCGAATCCAA
CTGGAAGCCGTGGCGGGCCTCTCCACTTTTTTCTCGGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig650:61396..62433+

>mRNA_F-serratus_M_contig650.17489.1 ID=mRNA_F-serratus_M_contig650.17489.1|Name=mRNA_F-serratus_M_contig650.17489.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig650:61396..62433+ (Fucus serratus male)
CTCGCACCCGAGTCGCAGGAAACTACCTCCTTCAGGAACGAGCTGTTAAT
GCCGTCGAGAGTTCCCGATATTAAGGAGGTGTTGACACGGTTCTCGTCGG
ACGCGCCCCCTTTCGATGAACTTGAGTGCACAGCGAGGCGCAGCCGACGC
CTGGTCGATGGTGCGATCAGAGCGGCGAGGACGGCACCCAGCGGGGGAAG
CGGCGTTGCCGGGCCCGGCGGAGTCAGAACGATCGGCGTAGCGCGTACGT
TGCGTGCGAAGGCGGCGCGGGAGGCGGCGATCGCGGGCTGCGCGCGCCCA
GGGACGAACAAGGCTGTGAGGGCGGGAATAGTCTCGGTCTTGGCGGCTCC
AGCGGCTGTTCGTTTGACAAGCTCGCACCCGAGTCGCAGGAAACTACCTC
CTTCAGGAACGAGCTGTTAATGCCGTCGAGAGTTCCCGATATTAAGGAGG
TGTTGACACGGTTCTCGTCGGACGCGCCCCCTTTCGATGAACTTGAGTGC
ACAGCGAGGCGCAGCCGACGCCTGGTCGATGGTGCGATCAGAGCGGCGAG
GACGGCACCCAGCGGGGGAAGCGGCGTTGCCGGGCCCGGCGGAGTCAGAA
CGATCGGCGTAGCGCGTACGTTGCGTGCGAAGGCGGCGCGGGAGGCGGCG
ATCGCGGGCTGCGCGCGCCCAGGGACGAACAAGGCTGTGAGGGCGGGAAT
AGTCTCGGTCTTGGCGGCTCCAGCGGCTGTTCGTTTGACAAGGTACGTGC
GCCATAACTTAAAAGAATTCCGTCGAATCCAACTGGAAGCCGTGGCGGGC
CTCTCCACTTTTTTCTCGGTACGTGCGCCATAACTTAAAAGAATTCCGTC
GAATCCAACTGGAAGCCGTGGCGGGCCTCTCCACTTTTTTCTCG
back to top