mRNA_F-serratus_M_contig65.17476.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17476.1
Unique NamemRNA_F-serratus_M_contig65.17476.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:578663..579190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932002.2143023-UTR-F-serratus_M_contig65:578662..5788541622932002.2143023-UTR-F-serratus_M_contig65:578662..578854Fucus serratus maleUTRF-serratus_M_contig65 578663..578854 +
1690964096.899975-UTR-F-serratus_M_contig65:578662..5788541690964096.899975-UTR-F-serratus_M_contig65:578662..578854Fucus serratus maleUTRF-serratus_M_contig65 578663..578854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932002.2270706-CDS-F-serratus_M_contig65:578854..5791901622932002.2270706-CDS-F-serratus_M_contig65:578854..579190Fucus serratus maleCDSF-serratus_M_contig65 578855..579190 +
1690964096.9114718-CDS-F-serratus_M_contig65:578854..5791901690964096.9114718-CDS-F-serratus_M_contig65:578854..579190Fucus serratus maleCDSF-serratus_M_contig65 578855..579190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17476.1prot_F-serratus_M_contig65.17476.1Fucus serratus malepolypeptideF-serratus_M_contig65 578855..579190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17476.1

>prot_F-serratus_M_contig65.17476.1 ID=prot_F-serratus_M_contig65.17476.1|Name=mRNA_F-serratus_M_contig65.17476.1|organism=Fucus serratus male|type=polypeptide|length=112bp
MSRKRVGDFYQSRSVQYAYHCDLRTRIVSCFDVAVPTSGTYSRSPATYWY
MLCIHSENLKGWYNITGNHGYYQYRNIIRTPFLEDPSLPSPVRHDIVGLP
YTGKSIAPLHNV
back to top

mRNA from alignment at F-serratus_M_contig65:578663..579190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17476.1 ID=mRNA_F-serratus_M_contig65.17476.1|Name=mRNA_F-serratus_M_contig65.17476.1|organism=Fucus serratus male|type=mRNA|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig65:578663..579190+ (Fucus serratus male)
ACAGTAAGTTTTCTTTGTGAAAGATAAGAATACCGCCTGCCCCATCTAGG
CCATTGCGCGCCGGTCCCGTAAAGCTCGAGAGACTTCTCAACAGTCTACA
CCATCAAACGCAGCAGATTGGAATGGTCAGCACTGGTACAAGATGCTGCC
AAGAAACTTACTTCTCGCTTTGAGGCGGCGTTGGAGTCTGACATGTCAAG
GAAAAGGGTAGGTGATTTCTATCAATCGAGGTCTGTTCAATACGCCTACC
ACTGTGACCTGCGTACGCGAATTGTCTCTTGCTTCGACGTGGCAGTGCCA
ACTTCTGGTACGTACAGTCGCTCACCCGCCACATACTGGTACATGCTATG
CATCCATTCAGAAAATCTCAAAGGGTGGTATAATATTACGGGAAATCATG
GCTACTATCAATACAGAAACATAATTCGGACTCCTTTCCTCGAGGACCCA
TCCCTCCCCTCTCCTGTAAGGCACGATATTGTCGGCCTTCCCTACACTGG
GAAATCCATCGCACCGCTGCACAACGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig65:578663..579190+

>mRNA_F-serratus_M_contig65.17476.1 ID=mRNA_F-serratus_M_contig65.17476.1|Name=mRNA_F-serratus_M_contig65.17476.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig65:578663..579190+ (Fucus serratus male)
ATGTCAAGGAAAAGGGTAGGTGATTTCTATCAATCGAGGTCTGTTCAATA
CGCCTACCACTGTGACCTGCGTACGCGAATTGTCTCTTGCTTCGACGTGG
CAGTGCCAACTTCTGGTACGTACAGTCGCTCACCCGCCACATACTGGTAC
ATGCTATGCATCCATTCAGAAAATCTCAAAGGGTGGTATAATATTACGGG
AAATCATGGCTACTATCAATACAGAAACATAATTCGGACTCCTTTCCTCG
AGGACCCATCCCTCCCCTCTCCTGTAAGGCACGATATTGTCGGCCTTCCC
TACACTGGGAAATCCATCGCACCGCTGCACAACGTCATGTCAAGGAAAAG
GGTAGGTGATTTCTATCAATCGAGGTCTGTTCAATACGCCTACCACTGTG
ACCTGCGTACGCGAATTGTCTCTTGCTTCGACGTGGCAGTGCCAACTTCT
GGTACGTACAGTCGCTCACCCGCCACATACTGGTACATGCTATGCATCCA
TTCAGAAAATCTCAAAGGGTGGTATAATATTACGGGAAATCATGGCTACT
ATCAATACAGAAACATAATTCGGACTCCTTTCCTCGAGGACCCATCCCTC
CCCTCTCCTGTAAGGCACGATATTGTCGGCCTTCCCTACACTGGGAAATC
CATCGCACCGCTGCACAACGTC
back to top