mRNA_F-serratus_M_contig65.17465.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17465.1
Unique NamemRNA_F-serratus_M_contig65.17465.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17465.1 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.030e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:  835 RAERPFPMLDVSMMGNLGGPIRVVPNSLSPIPIDNEYFVGMALLIIKREPMDEAYAHMFE 1014
            R +RPF  L  SM+GN  GP++  PNS++PIPIDN++F G ALL+I+REPMD++YAHMFE
Sbjct:  385 RPQRPFRQLSASMLGNKAGPLKAAPNSIAPIPIDNDHFEGAALLMIRREPMDKSYAHMFE 444
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BLAST of mRNA_F-serratus_M_contig65.17465.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.310e-14
Identity = 79/218 (36.24%), Postives = 101/218 (46.33%), Query Frame = 1 
Query:  391 GGSGHVGERR-ELGLDVP---PFATSVGGGEAQAPYREGQR------RRPDQSQTEPRANGLTPTSLTKVFAGSSEAGPRRMVSANASQSDNAIAGISDRGDQVVEQSGARAEQYREPEGVPKEGMIDNTGSARVGFVNGGARLEVSGGRRTLAPEWERAERPFPMLDVSMMGNLGGPIRVVPNSLSPIPIDNEYFVGMALLIIKREPMDEAYAHMFE 1014
            GGSG  G R  E G  V      AT   GG A+  +R G+R           + T   ANG    S   V  G SE   +  V   AS+  +A  GI        E+  A  EQ    +GV +      TG+                G R L        RPF  L  SM+GN  GP++  PNS++PIPIDN++F G ALL+I+REPMD++YAHMFE
Sbjct:  373 GGSGSCGRRNLESGSRVNLRGRHATEEEGGGARD-WRNGERATAAAEEESGSAPTRAVANGGAAESGAAVAEGESE---KERVPTGASERSSASGGI--------ERPNAAEEQPESRQGVQEMKPTRGTGA----------------GPRPL--------RPFRQLSASMLGNKAGPLKAAPNSIAPIPIDNDHFEGAALLMIRREPMDKSYAHMFE 554
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCR6_9PHAE4.030e-1561.67DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LMK0_ECTSI1.310e-1436.24DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:365038..367394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1020
Cds size1020
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932001.2290077-CDS-F-serratus_M_contig65:365037..3659511622932001.2290077-CDS-F-serratus_M_contig65:365037..365951Fucus serratus maleCDSF-serratus_M_contig65 365038..365951 +
1690964096.4988506-CDS-F-serratus_M_contig65:365037..3659511690964096.4988506-CDS-F-serratus_M_contig65:365037..365951Fucus serratus maleCDSF-serratus_M_contig65 365038..365951 +
1622932001.2492194-CDS-F-serratus_M_contig65:367288..3673941622932001.2492194-CDS-F-serratus_M_contig65:367288..367394Fucus serratus maleCDSF-serratus_M_contig65 367289..367394 +
1690964096.512817-CDS-F-serratus_M_contig65:367288..3673941690964096.512817-CDS-F-serratus_M_contig65:367288..367394Fucus serratus maleCDSF-serratus_M_contig65 367289..367394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17465.1prot_F-serratus_M_contig65.17465.1Fucus serratus malepolypeptideF-serratus_M_contig65 365038..367394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17465.1

>prot_F-serratus_M_contig65.17465.1 ID=prot_F-serratus_M_contig65.17465.1|Name=mRNA_F-serratus_M_contig65.17465.1|organism=Fucus serratus male|type=polypeptide|length=340bp
GIENSIPEDSSVGDVGVASEPGYESFPSLLLLGIAAMAEQPGEDAAVFPP
DASSESTIAPHEPRREPTSSPRNASGGVTTRNGNNNDNCRLRADCEKSSD
MAYQDSATGDIISSNGLRREAGRSVNDEHGGGSGHVGERRELGLDVPPFA
TSVGGGEAQAPYREGQRRRPDQSQTEPRANGLTPTSLTKVFAGSSEAGPR
RMVSANASQSDNAIAGISDRGDQVVEQSGARAEQYREPEGVPKEGMIDNT
GSARVGFVNGGARLEVSGGRRTLAPEWERAERPFPMLDVSMMGNLGGPIR
VVPNSLSPIPIDNEYFVGMALLIIKREPMDEAYAHMFEV*
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mRNA from alignment at F-serratus_M_contig65:365038..367394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17465.1 ID=mRNA_F-serratus_M_contig65.17465.1|Name=mRNA_F-serratus_M_contig65.17465.1|organism=Fucus serratus male|type=mRNA|length=2357bp|location=Sequence derived from alignment at F-serratus_M_contig65:365038..367394+ (Fucus serratus male)
GGGATAGAGAACAGCATTCCTGAAGACAGTTCTGTGGGGGATGTCGGTGT
AGCGTCCGAGCCTGGCTACGAGTCGTTTCCGTCTCTGCTACTGCTAGGAA
TCGCGGCCATGGCGGAACAGCCAGGCGAAGACGCTGCCGTTTTCCCGCCT
GACGCCTCTAGCGAAAGCACTATCGCCCCGCACGAGCCGAGACGCGAACC
GACCTCGTCGCCTCGGAACGCGTCCGGTGGGGTAACCACGCGGAATGGCA
ACAATAACGATAACTGTCGCTTGCGCGCGGACTGCGAAAAGAGCAGTGAC
ATGGCCTATCAAGACTCCGCTACCGGAGACATCATTTCTTCGAATGGCCT
CCGAAGAGAGGCCGGAAGAAGCGTAAACGACGAGCACGGTGGAGGTAGCG
GCCACGTTGGAGAGCGCAGAGAATTGGGCCTCGATGTCCCACCCTTCGCC
ACTTCTGTGGGAGGCGGCGAAGCACAAGCGCCGTATCGAGAGGGGCAGCG
GCGGCGGCCGGACCAAAGCCAGACAGAACCTAGAGCGAACGGACTTACCC
CTACGTCGTTAACGAAGGTTTTCGCGGGATCTTCGGAGGCGGGGCCTCGA
CGGATGGTGTCAGCCAACGCTTCGCAGTCGGACAATGCCATAGCTGGAAT
ATCCGACAGAGGGGATCAAGTCGTGGAACAATCTGGCGCCCGGGCGGAGC
AATACCGGGAACCAGAGGGTGTTCCAAAAGAAGGCATGATCGATAACACG
GGCTCGGCGAGGGTAGGGTTTGTGAATGGGGGGGCGCGTTTGGAGGTCAG
CGGTGGCCGAAGGACTCTGGCCCCGGAATGGGAGAGAGCGGAACGGCCGT
TCCCGATGCTGGACGTGAGCATGATGGGGAACCTTGGCGGGCCTATCCGA
GTGGTGCCGAACAGGTGAGGAGTTACTATTTTCTTCAAGAGCGTGGTGGG
AAGCTTCACTTGGTGACGGACCATGCCGTTCGTTATAAATTGTCAAACTT
GTTGTGCGCCGCAGGTCCGTTTTCTATATTTTTTTCTCGTGTCCGTAAGC
ACGCGGGCGTAAGTGTGAGTGTATGCGAATATTTTACTCTACCGTGCAGC
CTTTACGTCGGACTAGGCTTCCGCAAAAGTATCCCACGCGTCGCCCCGCT
AGATATTTCCTATGATAAAAAGACGCAGCACCTGCAGCAACCTACTCAAC
GGTGCGCCCTCTCTCGATAGTTACATTCGCTGGCATTTTTTCGTAGTCGT
AATTGGTTGTTAAGACCCGCTATATAATGTCAAAACAAAAGCCTGCTGAC
ACTCAGTAATCGCGAACTTTGCCATGGTCTCTCTACATATTTTCGATGAA
AGCCGCAAGGATCAATGGTGCAGTGGAAACGAATGCCGTACGGATTCCGC
TTTCGAAGCCCATTCGCAGGGACAAAAAGCAACCCCAACACAGCGATGCG
CTAGATTTACCTACGGTAGTCCCGAGTCAAAACCATTGTGCACCCGGGAG
AAGCACTTCATGGTGCTGAACACGACACGCGTATAATCTATGTCCGTCGC
CTGCTTTTAACCAACGAAGCTCACTACGCGTGTATCGTTACAAGGTCTTG
CCACAGCAGTTTTGGTGGACCCACAATATCCCGAGTGTTAACATGGTGTT
CCCCCTTCTGTCGTATACATAAACCGGACCGCGCGCGGCACAGTTATCGG
GCAAAATCGGTCTATACAGACGGTGGAGAACTGCATTTCTACTGAAATGC
CTATGTTATACCACGTGAGGCATCCGTAACTCTTCCAAAGCAAGTGATTT
CTCTATGCGTCCTTCCGTACCATCATTATGCTTTTGTTACCTAGTAGTAA
AAGTGATATGATACATACTTCTTCGTAATAATATAATATTTACCACCACC
GGGGTAATCTCCCCCCCCCCCAAACGCCTCCACTTTTTCAACCAGAACCA
CATTGGCCAGTATAGTATAGTCACATCAAAATACTCGTACTGCTGTTATG
TTTGAAAACGTTATGATTTGCGGGGTTCGCCCCCCCCACCCCCCACCGAG
GACCGTGTGCCCTGATATTTCTGTACCCCCTCCATTCCGGGGAAATTCGA
CGAGGAACATCGATGTCCCCGGGATACGTGTGATGTGCCCGCACTACCAC
TAGTTAGTGACCCTTTTTTCCCCACTCTCTAGGAAGAGGGGGATGACTCT
TGAGTTCCTGCTAAACTCGATACCCACATCCCATCCTTTGCGCCTGATCA
GCTTGAGTCCGATCCCGATCGACAACGAGTACTTCGTTGGAATGGCGCTA
CTCATTATCAAGAGGGAGCCCATGGACGAAGCTTATGCGCACATGTTTGA
GGTATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:365038..367394+

>mRNA_F-serratus_M_contig65.17465.1 ID=mRNA_F-serratus_M_contig65.17465.1|Name=mRNA_F-serratus_M_contig65.17465.1|organism=Fucus serratus male|type=CDS|length=2040bp|location=Sequence derived from alignment at F-serratus_M_contig65:365038..367394+ (Fucus serratus male)
GGGATAGAGAACAGCATTCCTGAAGACAGTTCTGTGGGGGATGTCGGTGT
AGCGTCCGAGCCTGGCTACGAGTCGTTTCCGTCTCTGCTACTGCTAGGAA
TCGCGGCCATGGCGGAACAGCCAGGCGAAGACGCTGCCGTTTTCCCGCCT
GACGCCTCTAGCGAAAGCACTATCGCCCCGCACGAGCCGAGACGCGAACC
GACCTCGTCGCCTCGGAACGCGTCCGGTGGGGTAACCACGCGGAATGGCA
ACAATAACGATAACTGTCGCTTGCGCGCGGACTGCGAAAAGAGCAGTGAC
ATGGCCTATCAAGACTCCGCTACCGGAGACATCATTTCTTCGAATGGCCT
CCGAAGAGAGGCCGGAAGAAGCGTAAACGACGAGCACGGTGGAGGTAGCG
GCCACGTTGGAGAGCGCAGAGAATTGGGCCTCGATGTCCCACCCTTCGCC
ACTTCTGTGGGAGGCGGCGAAGCACAAGCGCCGTATCGAGAGGGGCAGCG
GCGGCGGCCGGACCAAAGCCAGACAGAACCTAGAGCGAACGGACTTACCC
CTACGTCGTTAACGAAGGTTTTCGCGGGATCTTCGGAGGCGGGGCCTCGA
CGGATGGTGTCAGCCAACGCTTCGCAGTCGGACAATGCCATAGCTGGAAT
ATCCGACAGAGGGGATCAAGTCGTGGAACAATCTGGCGCCCGGGCGGAGC
AATACCGGGAACCAGAGGGTGTTCCAAAAGAAGGCATGATCGATAACACG
GGCTCGGCGAGGGTAGGGTTTGTGAATGGGGGGGCGCGTTTGGAGGTCAG
CGGTGGCCGAAGGACTCTGGCCCCGGAATGGGAGAGAGCGGAACGGCCGT
TCCCGATGCTGGACGTGAGCATGATGGGGAACCTTGGCGGGCCTATCCGA
GTGGTGCCGAACAGGGGATAGAGAACAGCATTCCTGAAGACAGTTCTGTG
GGGGATGTCGGTGTAGCGTCCGAGCCTGGCTACGAGTCGTTTCCGTCTCT
GCTACTGCTAGGAATCGCGGCCATGGCGGAACAGCCAGGCGAAGACGCTG
CCGTTTTCCCGCCTGACGCCTCTAGCGAAAGCACTATCGCCCCGCACGAG
CCGAGACGCGAACCGACCTCGTCGCCTCGGAACGCGTCCGGTGGGGTAAC
CACGCGGAATGGCAACAATAACGATAACTGTCGCTTGCGCGCGGACTGCG
AAAAGAGCAGTGACATGGCCTATCAAGACTCCGCTACCGGAGACATCATT
TCTTCGAATGGCCTCCGAAGAGAGGCCGGAAGAAGCGTAAACGACGAGCA
CGGTGGAGGTAGCGGCCACGTTGGAGAGCGCAGAGAATTGGGCCTCGATG
TCCCACCCTTCGCCACTTCTGTGGGAGGCGGCGAAGCACAAGCGCCGTAT
CGAGAGGGGCAGCGGCGGCGGCCGGACCAAAGCCAGACAGAACCTAGAGC
GAACGGACTTACCCCTACGTCGTTAACGAAGGTTTTCGCGGGATCTTCGG
AGGCGGGGCCTCGACGGATGGTGTCAGCCAACGCTTCGCAGTCGGACAAT
GCCATAGCTGGAATATCCGACAGAGGGGATCAAGTCGTGGAACAATCTGG
CGCCCGGGCGGAGCAATACCGGGAACCAGAGGGTGTTCCAAAAGAAGGCA
TGATCGATAACACGGGCTCGGCGAGGGTAGGGTTTGTGAATGGGGGGGCG
CGTTTGGAGGTCAGCGGTGGCCGAAGGACTCTGGCCCCGGAATGGGAGAG
AGCGGAACGGCCGTTCCCGATGCTGGACGTGAGCATGATGGGGAACCTTG
GCGGGCCTATCCGAGTGGTGCCGAACAGCTTGAGTCCGATCCCGATCGAC
AACGAGTACTTCGTTGGAATGGCGCTACTCATTATCAAGAGGGAGCCCAT
GGACGAAGCTTATGCGCACATGTTTGAGGTATAGCTTGAGTCCGATCCCG
ATCGACAACGAGTACTTCGTTGGAATGGCGCTACTCATTATCAAGAGGGA
GCCCATGGACGAAGCTTATGCGCACATGTTTGAGGTATAG
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