mRNA_F-serratus_M_contig6497.17452.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6497.17452.1
Unique NamemRNA_F-serratus_M_contig6497.17452.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6497.17452.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-14
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   70 SIIVLLSCGVGYFVYAHPHCHYDQREVDLERDLTFCSMDYAPKGVCCTEAEETALEETFNAVGDLTAECADYYKQMLCGVCGTY 321
            SI ++L   +     +HP C+ D R  D +  L FC    A  G CCT+AEE  ++    AVG+LT +C D YKQ++CGVCG+Y
Sbjct:    9 SIAIMLLGALITLCASHPLCYVDDRPTDPDEILEFCPE--AQSGACCTDAEEALVQLRHEAVGNLTGDCDDLYKQVVCGVCGSY 90
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BLAST of mRNA_F-serratus_M_contig6497.17452.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.240e-11
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   61 MLKSIIVLLSCGVGYFVYAHPHCHYDQREVDLERDLTFCSMDYAPKGVCCTEAEETALEETFNAVG----DLTAECADYYKQMLCGVCGTY 321
            M++S   L +  V   V +HP C  D +  D ++ LTFC    A  G CCT+ EE  +   FNAV     +LT +C D YKQ++C  C +Y
Sbjct:    1 MMRSFACLAAL-VATQVASHPLCFIDDKPTDYDQVLTFCDNSIASSGACCTDDEEAQVVVDFNAVTPVGEELTGDCPDLYKQVVCARCHSY 90
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6497.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6T7_ECTSI2.350e-1442.86WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G957_ECTSI2.240e-1138.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6497contigF-serratus_M_contig6497:17139..17862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size322
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6497.17452.1prot_F-serratus_M_contig6497.17452.1Fucus serratus malepolypeptideF-serratus_M_contig6497 17139..17802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.6547554-CDS-F-serratus_M_contig6497:17138..171651622932000.6547554-CDS-F-serratus_M_contig6497:17138..17165Fucus serratus maleCDSF-serratus_M_contig6497 17139..17165 -
1690964096.2298727-CDS-F-serratus_M_contig6497:17138..171651690964096.2298727-CDS-F-serratus_M_contig6497:17138..17165Fucus serratus maleCDSF-serratus_M_contig6497 17139..17165 -
1622932000.701286-CDS-F-serratus_M_contig6497:17568..178021622932000.701286-CDS-F-serratus_M_contig6497:17568..17802Fucus serratus maleCDSF-serratus_M_contig6497 17569..17802 -
1690964096.2457201-CDS-F-serratus_M_contig6497:17568..178021690964096.2457201-CDS-F-serratus_M_contig6497:17568..17802Fucus serratus maleCDSF-serratus_M_contig6497 17569..17802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.7237172-UTR-F-serratus_M_contig6497:17802..178621622932000.7237172-UTR-F-serratus_M_contig6497:17802..17862Fucus serratus maleUTRF-serratus_M_contig6497 17803..17862 -
1690964096.2633245-UTR-F-serratus_M_contig6497:17802..178621690964096.2633245-UTR-F-serratus_M_contig6497:17802..17862Fucus serratus maleUTRF-serratus_M_contig6497 17803..17862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6497.17452.1

>prot_F-serratus_M_contig6497.17452.1 ID=prot_F-serratus_M_contig6497.17452.1|Name=mRNA_F-serratus_M_contig6497.17452.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MLKSIIVLLSCGVGYFVYAHPHCHYDQREVDLERDLTFCSMDYAPKGVCC
TEAEETALEETFNAVGDLTAECADYYKQMLCGVCGTY
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mRNA from alignment at F-serratus_M_contig6497:17139..17862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6497.17452.1 ID=mRNA_F-serratus_M_contig6497.17452.1|Name=mRNA_F-serratus_M_contig6497.17452.1|organism=Fucus serratus male|type=mRNA|length=724bp|location=Sequence derived from alignment at F-serratus_M_contig6497:17139..17862- (Fucus serratus male)
CTTCTTTCTGTCCTCTCAAGATTCATCTCTACAGTTCATTTGGATTACTG
AACCAGAGCCATGCTGAAGAGCATCATTGTCCTGTTGTCTTGCGGAGTGG
GTTACTTCGTGTATGCCCACCCACATTGCCACTATGACCAGCGAGAGGTC
GATCTCGAAAGAGATCTGACGTTCTGCTCCATGGACTACGCCCCCAAAGG
CGTTTGCTGCACCGAAGCGGAAGAGACAGCGCTTGAAGAAACGTTTAACG
CGGTCGGCGATCTTACTGCAGAGTGTGCCGACTACTACAAACAGGTGTTT
GAAGAAAACCATCTGCAGAAATTTACATCATGATTGTTATTTATGTAATG
CACATCTAAGGCTAGACGCAGAGAATGAAAGCTGCCACCTCTTTCTTGCC
CCCCACGATGTTTTCAGGCAGAGTTGTTATTAAATGTTTTGGTCCCCTGT
TCGCCTTGAGTGTATGTCCGCTTTTTTAAAATATGTTTGTTGAAGGTGTC
ACGTTGCTCACGATGAATGAGAATACTCACAAGTAGAATATGCATAGTTT
CACAGAGCGAACCATGTTTAGGGAAACGACAAGACTCCGAACTACCCTAA
ATAGAGTCATTACAAAGTTGGCGCGCGGTTAGAATGCACCACTTGGTTGT
GGAGTGAGCGAGAACTGTCCTTTCTTTTTTCTTTTCTCCCCCACCAGATG
CTGTGCGGTGTATGCGGAACTTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6497:17139..17862-

>mRNA_F-serratus_M_contig6497.17452.1 ID=mRNA_F-serratus_M_contig6497.17452.1|Name=mRNA_F-serratus_M_contig6497.17452.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig6497:17139..17862- (Fucus serratus male)
ATGCTGAAGAGCATCATTGTCCTGTTGTCTTGCGGAGTGGGTTACTTCGT
GTATGCCCACCCACATTGCCACTATGACCAGCGAGAGGTCGATCTCGAAA
GAGATCTGACGTTCTGCTCCATGGACTACGCCCCCAAAGGCGTTTGCTGC
ACCGAAGCGGAAGAGACAGCGCTTGAAGAAACGTTTAACGCGGTCGGCGA
TCTTACTGCAGAGTGTGCCGACTACTACAAACAGATGCTGAAGAGCATCA
TTGTCCTGTTGTCTTGCGGAGTGGGTTACTTCGTGTATGCCCACCCACAT
TGCCACTATGACCAGCGAGAGGTCGATCTCGAAAGAGATCTGACGTTCTG
CTCCATGGACTACGCCCCCAAAGGCGTTTGCTGCACCGAAGCGGAAGAGA
CAGCGCTTGAAGAAACGTTTAACGCGGTCGGCGATCTTACTGCAGAGTGT
GCCGACTACTACAAACAGATGCTGTGCGGTGTATGCGGAACTTACATGCT
GTGCGGTGTATGCGGAACTTAC
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