mRNA_F-serratus_M_contig649.17433.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17433.1
Unique NamemRNA_F-serratus_M_contig649.17433.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig649.17433.1 vs. uniprot
Match: D8LQ94_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ94_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.140e-38
Identity = 99/190 (52.11%), Postives = 113/190 (59.47%), Query Frame = 2 
Query:    2 VVAAWEEKGSNRRIASLDGDELVPDKMVGGLVQEMSGELVINIHAALSSDGSSPQPRHRRSTSALPPVTATSNPASFGIQFPSTPGGRPSTPLTSPRSPFPEWAANIFRSSTGG----GGGPIDVEGVTAAANMTMPVGVTTAAV---REXXXXXXRPPISPRFGNDNGASVRGDGRARSFRRAASSSWW 550
            VVAAWEE+G+NR+IA LDG+  +PD+M  GLV+EM+GE V      + S      PRHRRS S L PV ATS   +FGIQFPSTPG RP TPLTSPRSPFPEWAANIFRSSTGG    GGG              +P  V   +V   R        PP SPRF   +        R R  RRAAS+SWW
Sbjct: 1022 VVAAWEEQGNNRKIALLDGEGALPDRMAAGLVEEMTGEPVYLPPPEVLSP-----PRHRRSPSGLAPVAATST--AFGIQFPSTPG-RPPTPLTSPRSPFPEWAANIFRSSTGGPNEDGGG--------------VPASVDVGSVNGGRGGGGGDNLPPTSPRFSTPS--------RQRQLRRAASTSWW 1181
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ94_ECTSI1.140e-3852.11Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:18304..19426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size721
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17433.1prot_F-serratus_M_contig649.17433.1Fucus serratus malepolypeptideF-serratus_M_contig649 18383..19258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931998.3370004-UTR-F-serratus_M_contig649:18303..183821622931998.3370004-UTR-F-serratus_M_contig649:18303..18382Fucus serratus maleUTRF-serratus_M_contig649 18304..18382 +
1690964095.2497406-UTR-F-serratus_M_contig649:18303..183821690964095.2497406-UTR-F-serratus_M_contig649:18303..18382Fucus serratus maleUTRF-serratus_M_contig649 18304..18382 +
1622931998.3907993-UTR-F-serratus_M_contig649:19258..194261622931998.3907993-UTR-F-serratus_M_contig649:19258..19426Fucus serratus maleUTRF-serratus_M_contig649 19259..19426 +
1690964095.2856195-UTR-F-serratus_M_contig649:19258..194261690964095.2856195-UTR-F-serratus_M_contig649:19258..19426Fucus serratus maleUTRF-serratus_M_contig649 19259..19426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931998.3552175-CDS-F-serratus_M_contig649:18382..184401622931998.3552175-CDS-F-serratus_M_contig649:18382..18440Fucus serratus maleCDSF-serratus_M_contig649 18383..18440 +
1690964095.266684-CDS-F-serratus_M_contig649:18382..184401690964095.266684-CDS-F-serratus_M_contig649:18382..18440Fucus serratus maleCDSF-serratus_M_contig649 18383..18440 +
1622931998.3719194-CDS-F-serratus_M_contig649:18842..192581622931998.3719194-CDS-F-serratus_M_contig649:18842..19258Fucus serratus maleCDSF-serratus_M_contig649 18843..19258 +
1690964095.275919-CDS-F-serratus_M_contig649:18842..192581690964095.275919-CDS-F-serratus_M_contig649:18842..19258Fucus serratus maleCDSF-serratus_M_contig649 18843..19258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17433.1

>prot_F-serratus_M_contig649.17433.1 ID=prot_F-serratus_M_contig649.17433.1|Name=mRNA_F-serratus_M_contig649.17433.1|organism=Fucus serratus male|type=polypeptide|length=158bp
MVGGLVQEMSGELVINIHAALSSDGSSPQPRHRRSTSALPPVTATSNPAS
FGIQFPSTPGGRPSTPLTSPRSPFPEWAANIFRSSTGGGGGPIDVEGVTA
AANMTMPVGVTTAAVREKERERERPPISPRFGNDNGASVRGDGRARSFRR
AASSSWW*
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mRNA from alignment at F-serratus_M_contig649:18304..19426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17433.1 ID=mRNA_F-serratus_M_contig649.17433.1|Name=mRNA_F-serratus_M_contig649.17433.1|organism=Fucus serratus male|type=mRNA|length=1123bp|location=Sequence derived from alignment at F-serratus_M_contig649:18304..19426+ (Fucus serratus male)
GGTGGTCGCCGCGTGGGAGGAAAAAGGGAGCAACCGGCGTATAGCCAGCC
TCGACGGGGACGAGCTCGTGCCGGATAAGATGGTCGGGGGACTGGTGCAA
GAAATGAGTGGGGAGCTGGTTATAAATATCCACGCCGGTGAGCCCGCTGC
TGAAATGGTCTCTGGTAATACTAAATGGTCTAACGGTGCTGCGGAGGCGT
TTCGGCTGAAACCCTGAAATGTACAGCAGCACGCGGAGGCGTTTTTTATC
CTCGATACCTGAATTGATAATCTTGTCTTACCAGGTACGTGTGCACATTT
ATTAGCTCATTTTCGTGCATTCCTCGTTCCTGGATAACGGGAGGACGATA
ATGCATTCTGCAGTATTCCATAGTATTCCTAGTATGAAAATAagAGAGAG
AGAGAGAGAAAGCACTAGTACTCTTTCCCCCACCCAAACTCCCACGCCTC
CATCTCTCCGACCCATGGCACCCGCCCGCCCCTCCCCCACCCCCCAATGG
CCGAACATGTTCGATGACCACACATACATCCCGGAACAGCGCTGAGCTCT
GACGGGAGCTCGCCTCAGCCAAGGCACCGCCGTAGCACGAGCGCTCTGCC
TCCTGTTACGGCCACCTCCAATCCGGCAAGCTTCGGGATCCAGTTTCCTT
CGACCCCCGGCGGACGGCCCTCGACGCCCCTGACCTCCCCGCGGTCACCC
TTCCCGGAGTGGGCGGCAAATATCTTCAGGAGCAGCACAGGGGGCGGGGG
CGGTCCGATCGACGTGGAGGGGGTTACGGCTGCGGCAAATATGACCATGC
CCGTGGGAGTTACGACTGCGGCGGTTAGGGAAAAGGAGCGGGAGCGGGAG
CGTCCACCCATTTCGCCGAGGTTTGGTAATGATAATGGCGCCTCGGTCAG
GGGGGACGGGAGGGCGAGGTCTTTCAGGCGCGCGGCGAGCAGTTCGTGGT
GGTGATAATGTACAGCACACTGCGATTTGTAGTCTAGAGCGAGTCTGCTA
ATGCACTACTGTACTATTAAGAGTGTACTGTCTGTGTAGACATGGATAGG
CTCTTCATTGCTGCCGTTCACGATGTCGGGTGAGGCGATGTGGGAAGGGA
TGGAGGTATAGGTATAGGTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:18304..19426+

>mRNA_F-serratus_M_contig649.17433.1 ID=mRNA_F-serratus_M_contig649.17433.1|Name=mRNA_F-serratus_M_contig649.17433.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig649:18304..19426+ (Fucus serratus male)
ATGGTCGGGGGACTGGTGCAAGAAATGAGTGGGGAGCTGGTTATAAATAT
CCACGCCGATGGTCGGGGGACTGGTGCAAGAAATGAGTGGGGAGCTGGTT
ATAAATATCCACGCCGCGCTGAGCTCTGACGGGAGCTCGCCTCAGCCAAG
GCACCGCCGTAGCACGAGCGCTCTGCCTCCTGTTACGGCCACCTCCAATC
CGGCAAGCTTCGGGATCCAGTTTCCTTCGACCCCCGGCGGACGGCCCTCG
ACGCCCCTGACCTCCCCGCGGTCACCCTTCCCGGAGTGGGCGGCAAATAT
CTTCAGGAGCAGCACAGGGGGCGGGGGCGGTCCGATCGACGTGGAGGGGG
TTACGGCTGCGGCAAATATGACCATGCCCGTGGGAGTTACGACTGCGGCG
GTTAGGGAAAAGGAGCGGGAGCGGGAGCGTCCACCCATTTCGCCGAGGTT
TGGTAATGATAATGGCGCCTCGGTCAGGGGGGACGGGAGGGCGAGGTCTT
TCAGGCGCGCGGCGAGCAGTTCGTGGTGGTGACGCTGAGCTCTGACGGGA
GCTCGCCTCAGCCAAGGCACCGCCGTAGCACGAGCGCTCTGCCTCCTGTT
ACGGCCACCTCCAATCCGGCAAGCTTCGGGATCCAGTTTCCTTCGACCCC
CGGCGGACGGCCCTCGACGCCCCTGACCTCCCCGCGGTCACCCTTCCCGG
AGTGGGCGGCAAATATCTTCAGGAGCAGCACAGGGGGCGGGGGCGGTCCG
ATCGACGTGGAGGGGGTTACGGCTGCGGCAAATATGACCATGCCCGTGGG
AGTTACGACTGCGGCGGTTAGGGAAAAGGAGCGGGAGCGGGAGCGTCCAC
CCATTTCGCCGAGGTTTGGTAATGATAATGGCGCCTCGGTCAGGGGGGAC
GGGAGGGCGAGGTCTTTCAGGCGCGCGGCGAGCAGTTCGTGGTGGTGA
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