mRNA_F-serratus_M_contig6481.17428.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6481.17428.1
Unique NamemRNA_F-serratus_M_contig6481.17428.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-16
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:   19 YYRRPCFVWVVELACNRYFPGLHPPCPVCKSSRGVKRKEWCSRRAILRDGSCDLTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAID 351
            +Y +  FVWV E   +      + PCP C             RR  L D  C L  + Y C  C ++N G+P+DER ++TF  WDAGVL  +  ++ + FPF+LTK++AI 
Sbjct:   33 FYLKKVFVWVPEYLWDEI---EYIPCPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAIS 140
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.920e-15
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:   13 DHYYRRPCFVWVVELACNRYFPGLHP-PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            D +Y++   VW+ E      FP L   PCP C   +G     W     RR  +      +  F YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:  159 DRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 270
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.570e-14
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:   13 DHYYRRPCFVWVVELACNRYFPGLHP-PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            D +Y++   VW+ E      FP L   PCP C   +G     W     RR  +      +  F YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:   95 DRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 206
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.710e-14
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:   13 DHYYRRPCFVWVVELACNRYFPGLHPPCPVCKSSRGVKRKEWCS--RRAILRDGSCDLTCFMYKCTVCAKSNA-GKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAID 351
            + +Y +   VWV E      +  +H PCP C +        W +  RR  L D  C +  F Y+C  C ++N   + +DER ++TF  WD  VL ++  F+ E FPF+LTK++AI+
Sbjct:  179 EPFYLKKVLVWVPEYI----WEDVHIPCPHCGARAQPDGDGWNTEPRRVFLEDDVCYMIGFRYECKECTRANKEDRSEDERTTQTFNAWDPAVLARMDDFVSEQFPFVLTKKAAIN 290
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.090e-14
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:   13 DHYYRRPCFVWVVELACNRYFPGLHP-PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            D +Y++   VW+ E      FP L   PCP C   +G     W     RR  +      +  F YKC  CA+ N GK + E+   +F  W AG L +LP ++ + FPFLLTKRS I++
Sbjct:   95 DRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEI 206
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.370e-11
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  178 LTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            +T F YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:    8 VTGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 66
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5KGK6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.270e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  187 FMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            F YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:   11 FRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 66
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-10
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  190 MYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            +YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:   11 VYKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 65
[Close]
BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.080e-10
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  187 FMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            F YKC  CA+ N GK + E+   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:  117 FRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 172
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BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Match: D7FSB0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.740e-10
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  187 FMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDL 354
            F YKC  CA+ N GK +  +   +F  WDAG L +LP ++ + FPFLLTKRS I++
Sbjct:    3 FRYKCAKCAEFNKGKQEVGKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEI 58
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6481.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FIV2_ECTSI2.600e-1636.943'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JXN0_9PHAE9.920e-1537.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE1.570e-1437.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D4_9PHAE2.710e-1434.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE8.090e-1436.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTU1_9PHAE3.370e-1149.153'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KGK6_9PHAE5.270e-1150.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJA7_9PHAE1.030e-1049.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX0_9PHAE1.080e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSB0_ECTSI2.740e-1048.21Uncharacterized protein n=4 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6481contigF-serratus_M_contig6481:2765..3368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons2
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931997.554801-CDS-F-serratus_M_contig6481:2764..30011622931997.554801-CDS-F-serratus_M_contig6481:2764..3001Fucus serratus maleCDSF-serratus_M_contig6481 2765..3001 +
1690964094.8899403-CDS-F-serratus_M_contig6481:2764..30011690964094.8899403-CDS-F-serratus_M_contig6481:2764..3001Fucus serratus maleCDSF-serratus_M_contig6481 2765..3001 +
1622931997.5698967-CDS-F-serratus_M_contig6481:3246..33661622931997.5698967-CDS-F-serratus_M_contig6481:3246..3366Fucus serratus maleCDSF-serratus_M_contig6481 3247..3366 +
1690964094.9030583-CDS-F-serratus_M_contig6481:3246..33661690964094.9030583-CDS-F-serratus_M_contig6481:3246..3366Fucus serratus maleCDSF-serratus_M_contig6481 3247..3366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6481.17428.1prot_F-serratus_M_contig6481.17428.1Fucus serratus malepolypeptideF-serratus_M_contig6481 2765..3366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6481.17428.1

>prot_F-serratus_M_contig6481.17428.1 ID=prot_F-serratus_M_contig6481.17428.1|Name=mRNA_F-serratus_M_contig6481.17428.1|organism=Fucus serratus male|type=polypeptide|length=119bp
LLVRDHYYRRPCFVWVVELACNRYFPGLHPPCPVCKSSRGVKRKEWCSRR
AILRDGSCDLTCFMYKCTVCAKSNAGKPKDERASETFRGWDAGVLEQLPL
FLQESFPFLLTKRSAIDLA
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mRNA from alignment at F-serratus_M_contig6481:2765..3368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6481.17428.1 ID=mRNA_F-serratus_M_contig6481.17428.1|Name=mRNA_F-serratus_M_contig6481.17428.1|organism=Fucus serratus male|type=mRNA|length=604bp|location=Sequence derived from alignment at F-serratus_M_contig6481:2765..3368+ (Fucus serratus male)
TTGCTGGTCCGCGATCACTACTACCGGCGCCCGTGCTTCGTGTGGGTGGT
GGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGCCCTG
TTTGCAAAAGCAGTCGGGGTGTCAAGCGGAAAGAATGGTGCTCGCGGCGC
GCCATCCTTCGAGATGGGTCATGTGACCTCACCTGCTTCATGTACAAATG
CACCGTGTGTGCAAAGAGTAACGCGGGCAAGCCGAAGGCATGGCAGATTT
TGAAATATCATGTTTTAGGTTGCCTGGTTTTATGCATGCACAAGCGTTGT
GCTCAGTAGCCGATAGCTTCGCAGCGACACATCATCATCACCAGCCTCCC
GTCGGCACTCAAGGTTGAGATAATTCCAACATTGGCGACACGCACCTTTG
GAACTAACGTGCCTTACTCTGCTTCGTTTTGCACGATGTCACTGCTGTTT
CCCTCACCCCCCAATCTCACCGCCGTTACAAGGACGAGCGTGCGTCGGAG
ACATTCAGAGGTTGGGATGCAGGAGTGCTGGAGCAACTTCCACTGTTCTT
GCAGGAGTCCTTCCCGTTCCTGTTGACCAAGCGGTCGGCAATAGATCTGG
CCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6481:2765..3368+

>mRNA_F-serratus_M_contig6481.17428.1 ID=mRNA_F-serratus_M_contig6481.17428.1|Name=mRNA_F-serratus_M_contig6481.17428.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig6481:2765..3368+ (Fucus serratus male)
TTGCTGGTCCGCGATCACTACTACCGGCGCCCGTGCTTCGTGTGGGTGGT
GGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGCCCTG
TTTGCAAAAGCAGTCGGGGTGTCAAGCGGAAAGAATGGTGCTCGCGGCGC
GCCATCCTTCGAGATGGGTCATGTGACCTCACCTGCTTCATGTACAAATG
CACCGTGTGTGCAAAGAGTAACGCGGGCAAGCCGAAGTTGCTGGTCCGCG
ATCACTACTACCGGCGCCCGTGCTTCGTGTGGGTGGTGGAGTTGGCGTGC
AACAGATACTTTCCAGGTCTTCATCCACCTTGCCCTGTTTGCAAAAGCAG
TCGGGGTGTCAAGCGGAAAGAATGGTGCTCGCGGCGCGCCATCCTTCGAG
ATGGGTCATGTGACCTCACCTGCTTCATGTACAAATGCACCGTGTGTGCA
AAGAGTAACGCGGGCAAGCCGAAGGACGAGCGTGCGTCGGAGACATTCAG
AGGTTGGGATGCAGGAGTGCTGGAGCAACTTCCACTGTTCTTGCAGGAGT
CCTTCCCGTTCCTGTTGACCAAGCGGTCGGCAATAGATCTGGCCGACGAG
CGTGCGTCGGAGACATTCAGAGGTTGGGATGCAGGAGTGCTGGAGCAACT
TCCACTGTTCTTGCAGGAGTCCTTCCCGTTCCTGTTGACCAAGCGGTCGG
CAATAGATCTGGCC
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