mRNA_F-serratus_M_contig648.17425.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig648.17425.1
Unique NamemRNA_F-serratus_M_contig648.17425.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig648.17425.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.470e-20
Identity = 77/189 (40.74%), Postives = 101/189 (53.44%), Query Frame = 1 
Query: 1042 RRSDIYPNQHAP-----RIQRSCGWSICGVGNANSALELGAAPSD---HNIPQSPEKTFSND--MFGMMAPCWRLLERTKAHLDKDQLEYMRGLLLTHAKKPMRRDQLLERAESCLQKQGHILAAFVMVFDGI-----DPPPSMSLCPAKKRQAGPSPSSAPRKA--TTFTSTNCPPAAVSEHRGAGPY 1557
            R+ +  P+ H       ++ R C     G G  + A   G++ S    + + + P++   N+   FG M PCW LLER  A++D+DQL YMRGLL+T+  KPM RDQLLERAESCLQ+Q  I  AFV VFD I     DPPP + L    KR    +P+  PR    T+FT    P A   E R    Y
Sbjct:  962 RQGERLPHSHVAVHVDAKVMRECAG---GSGRGHIASNGGSSSSGSGGYPLYRKPKEAAVNEDGEFGYMYPCWSLLERANAYMDQDQLVYMRGLLITNIHKPMTRDQLLERAESCLQEQPEIFMAFVKVFDRINHPYTDPPP-VPLYSGTKRPTPDTPAE-PRSVLRTSFTGRVLPTAGHIESRARASY 1145
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BLAST of mRNA_F-serratus_M_contig648.17425.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.440e-16
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1 
Query: 1207 FGMMAPCWRLLERTKAHLDKDQLEYMRGLLLTHAKKPMRRDQLLERAESCLQKQGHILAAFVMVFDGI 1410
            FG MAPCWR LE   A +DKDQL YM+GL+ TH +KPM RDQLLERA+SCLQ Q  I  AFV  FD I
Sbjct: 1021 FGFMAPCWRQLEMAHAFIDKDQLRYMKGLITTHVRKPMTRDQLLERADSCLQGQPEIFVAFVKTFDRI 1088
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVI2_9PHAE8.470e-2040.74ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE1.440e-1666.18ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:230305..233915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2160
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17425.1prot_F-serratus_M_contig648.17425.1Fucus serratus malepolypeptideF-serratus_M_contig648 231736..233486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931997.2122507-UTR-F-serratus_M_contig648:230304..2309761622931997.2122507-UTR-F-serratus_M_contig648:230304..230976Fucus serratus maleUTRF-serratus_M_contig648 230305..230976 +
1690964094.7266278-UTR-F-serratus_M_contig648:230304..2309761690964094.7266278-UTR-F-serratus_M_contig648:230304..230976Fucus serratus maleUTRF-serratus_M_contig648 230305..230976 +
1622931997.2311985-UTR-F-serratus_M_contig648:231294..2314931622931997.2311985-UTR-F-serratus_M_contig648:231294..231493Fucus serratus maleUTRF-serratus_M_contig648 231295..231493 +
1690964094.736754-UTR-F-serratus_M_contig648:231294..2314931690964094.736754-UTR-F-serratus_M_contig648:231294..231493Fucus serratus maleUTRF-serratus_M_contig648 231295..231493 +
1622931997.2536395-UTR-F-serratus_M_contig648:231649..2317351622931997.2536395-UTR-F-serratus_M_contig648:231649..231735Fucus serratus maleUTRF-serratus_M_contig648 231650..231735 +
1690964094.7483165-UTR-F-serratus_M_contig648:231649..2317351690964094.7483165-UTR-F-serratus_M_contig648:231649..231735Fucus serratus maleUTRF-serratus_M_contig648 231650..231735 +
1622931997.3464181-UTR-F-serratus_M_contig648:233486..2339151622931997.3464181-UTR-F-serratus_M_contig648:233486..233915Fucus serratus maleUTRF-serratus_M_contig648 233487..233915 +
1690964094.8090596-UTR-F-serratus_M_contig648:233486..2339151690964094.8090596-UTR-F-serratus_M_contig648:233486..233915Fucus serratus maleUTRF-serratus_M_contig648 233487..233915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931997.2736092-CDS-F-serratus_M_contig648:231735..2320441622931997.2736092-CDS-F-serratus_M_contig648:231735..232044Fucus serratus maleCDSF-serratus_M_contig648 231736..232044 +
1690964094.7587717-CDS-F-serratus_M_contig648:231735..2320441690964094.7587717-CDS-F-serratus_M_contig648:231735..232044Fucus serratus maleCDSF-serratus_M_contig648 231736..232044 +
1622931997.3035462-CDS-F-serratus_M_contig648:232226..2322921622931997.3035462-CDS-F-serratus_M_contig648:232226..232292Fucus serratus maleCDSF-serratus_M_contig648 232227..232292 +
1690964094.769999-CDS-F-serratus_M_contig648:232226..2322921690964094.769999-CDS-F-serratus_M_contig648:232226..232292Fucus serratus maleCDSF-serratus_M_contig648 232227..232292 +
1622931997.3185499-CDS-F-serratus_M_contig648:232936..2329981622931997.3185499-CDS-F-serratus_M_contig648:232936..232998Fucus serratus maleCDSF-serratus_M_contig648 232937..232998 +
1690964094.7805002-CDS-F-serratus_M_contig648:232936..2329981690964094.7805002-CDS-F-serratus_M_contig648:232936..232998Fucus serratus maleCDSF-serratus_M_contig648 232937..232998 +
1622931997.3310518-CDS-F-serratus_M_contig648:233149..2334861622931997.3310518-CDS-F-serratus_M_contig648:233149..233486Fucus serratus maleCDSF-serratus_M_contig648 233150..233486 +
1690964094.793135-CDS-F-serratus_M_contig648:233149..2334861690964094.793135-CDS-F-serratus_M_contig648:233149..233486Fucus serratus maleCDSF-serratus_M_contig648 233150..233486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig648.17425.1

>prot_F-serratus_M_contig648.17425.1 ID=prot_F-serratus_M_contig648.17425.1|Name=mRNA_F-serratus_M_contig648.17425.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MDLAASTPFVVQVRDAGLTAGQRRSIWGRRSDIYPNQHAPRIQRSCGWSI
CGVGNANSALELGAAPSDHNIPQSPEKTFSNDMFGMMAPCWRLLERTKAH
LDKDQLEYMRGLLLTHAKKPMRRDQLLERAESCLQKQGHILAAFVMVFDG
IDPPPSMSLCPAKKRQAGPSPSSAPRKATTFTSTNCPPAAVSEHRGAGPY
VPAPSSFWGDVGEHKTGHPNHANNSGADANRIPPGCAFSHSYPVTIMPEG
SSCLPRF*
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mRNA from alignment at F-serratus_M_contig648:230305..233915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig648.17425.1 ID=mRNA_F-serratus_M_contig648.17425.1|Name=mRNA_F-serratus_M_contig648.17425.1|organism=Fucus serratus male|type=mRNA|length=3611bp|location=Sequence derived from alignment at F-serratus_M_contig648:230305..233915+ (Fucus serratus male)
GCTGAAGCTCGTCGACTAGAGAAAATACGTCTGGACTGCGGAGTGGACAA
ACCAGGTTGCTGGGGTGGTGGTCCGGCGCGTGATAACAGTCACACCACCA
ATCTCTCGGCGGGTGCTACACAAACTTTGGATGAATCGCCAAGGGTGATT
CCTGCCAAAGAGGGTATTGGCGCTGAAGGTGTTGGTGCCAGCAGCCTGCC
TGAAAGGGTACTCACCTTAAAATTACAACATGTTGAGCTTTCGTCTCACA
AGTCACCCCAAGAGCACATCCTGAAAGCAGGCAAAACCCACCTTGACCAA
TCTACCATCGCAGACAGATCAGTGGCTGAAGTAGACCACAAGAAAGCTGA
GCAACCATTGCACCAGCTTACAACTGGACAGCGTAGCTCGGGGGCATCTA
CGTCGAGTGTGTCTAAACCCCGGAAGAATAGCGCACGCCAAGCAGCAGAA
GATATCGCTCCTGTCTGTTTCGACCCCACGAAAATAAGACCATTTGATAG
CACTTGCAACGACGAGGAAGGGGCCCTCTGTGATGGGAACGAGACAACGC
CAAGAACTTATGCGGTAACCGACGAAGAGGTCTCGATCGATCGTGAGGCT
GATGGTGACCTGGCTCATCCTTCTTTCGCCCTCCAGAATAGGAGAACTGA
GCATAGTCCAACAGTCAGCTCTGTGAGTCTTTCACCCGACCCCGAGGTCT
CGAGGCGAGGTTTAAGATTATCCTTCTCCACTGAAACATCTCATTTTCCT
TTTAGACCTTCGTTTGATGTGTTCTGCGACCTTTCCCAAGTAACTTAAGT
CAATGGTACCGCAATTTTCCCCTTATCTGGTAGTCGCTTGATTCCTGACT
TCATTTGGCTGTCATTCGTCGGGTATTATACCTTGCTATCTTGCCGATGG
CGGTATATGTAATATCTACTAATCGCCTCGTGCTCCCCCCCTCACTTTCT
GCCTTCGTGTGGGTCCCACCGCCTATGGTACGTTTTCTAGGTGCAAGATA
GCGACGCCGGAACACATGGCCAAGTGCCCACCAGAAACAGACGTAAACCC
TCTGCCGCCATTCCTTGTGTCAAGGTGCCCTTGCCCAAGTCAGTGGCGGA
GGCGACCTCAAAGCATCTGAGCCCCCTGGCCCCACATGAACTAAAGTGGT
CAGAGAGACGAACTCGTGCTCTCTGTGAATCAGTGTCAGGTGGGCATCTT
CCGGCCTCCCCTCACCGGGTGTGTATTCTGCTCTGCCCCTTGCATTTAGT
CTGCGTTGTAATGATTCATTGTTGTTTATAAAGATAGAATTTTATAAATT
AATGATATGTCTTTTCGCTACTTCTGTTTTTTATGTCTCCGTTAGCCGAA
ACCGTCCAGCCACCTCCGACCTACAGTGTGCGGTCACAACCGACGGCCCC
CGAAATCATCGGCAACAAGGAGCGACCATCGATGGACCTTGCCGCCTCTA
CTCCTTTCGTCGTCCAAGTGCGTGATGCCGGGCTAACTGCGGGTCAACGA
CGTTCCATCTGGGGTCGCCGGTCAGACATTTATCCTAATCAGCACGCCCC
TCGCATCCAACGCTCCTGCGGTTGGTCTATATGCGGTGTGGGCAACGCTA
ACAGCGCGCTAGAGTTGGGAGCAGCGCCTTCCGACCACAACATTCCACAG
TCCCCCGAGAAGACATTTTCCAATGACATGTTCGGAATGATGGCCCCCTG
CTGGCGACTTTTGGAAAGAACTAAGGCACACCTGGACAAGGTAAATATTG
CGCTGGGTGTCTGAATACAAGAAAACAACGGTCGTCATGCCAAATCTAGC
CGATTTGGTCCCGATAATCCTTTCAAATTAGAGACGCGTAGGACTAAATA
AACTCACTCTTTTGGCTCCTCGTGTAGAGCATAACGTTCGATTGTCGATA
ACGATTTCCCACGAATCAACAGGACCAGCTTGAGTACATGAGGGGACTAC
TCCTTACACACGCCAAGAAGCCAATGAGAAGGGACCAGGTAACTGCAGCT
ACACGCTGAAGAGCCTATTTATGATCCTTGTAACTGCAAGTACTGGCTAG
AGCGTCGAGAAGCAATGCGGGATTTACAAATATTTCGGAATGGTATCCCT
TCCTTACACTCGTCTATACTCCCATGCACTTTGGAGTACTAACAGGTACC
TTTGAAGCGATTGAAGAGGTCTGCAGAGTGGAATTCCCTAGAGTCGTTGA
GCGAATATTGGGGGGGGGATGGCTGAGTTTTTGAACCGTTTCAGGAGGGA
ACGACCCCAAATATTTCCTCTCGGGGACAAATTTGACCCCCTCCCTTGTG
AAAGCAGTTCAATTCGAACTAAATTTGCCGACCATATAAGGGATCGTGTA
GTCATGTCCCCTCTAAGGACTGTTCTGTTGACATCCCAGGGAACGGAGTC
GTCGAATTCCCTCCCACGCATTCCCTTATTGAACGATACCTGAGCGTTCG
AGGTCATGACTTGCCACGTTTATGTCGTTCATCCAATAGGTGTAATTTAG
CAGAAACCACCCTAATAGATTGAATTTCCCTCGCCGTTTGAGCAAAGACA
CATCCTAACACATTTAGTTCCCTGTATCTCTCCCCTGTACACCATTGTAC
CATTAACGTATTGCAATTACGACTCGCTTCAGCTACTCGAGAGGGCTGAG
AGCTGCCTGCAGAAGCAAGGCCACATCTTGGCCGCCTTTGTCATGTAAGC
CGGGGATCTAGAGCTGTCTTTGGTGTTGTGTAGTATGGCCAATCAGATTC
TGGTCCTAATAATATTAGAGCGTCAGCCTCCACTTAGTCGTATTAGTGGC
CACCCGTCACTCGATTCTTGCCACCGCCACCAATACCAACTGCAGGGTGT
TCGACGGGATCGACCCACCACCTTCAATGTCCCTGTGTCCGGCGAAAAAG
AGGCAAGCTGGTCCCAGTCCCAGCTCTGCTCCAAGAAAAGCGACGACGTT
TACCTCAACGAACTGCCCCCCAGCTGCCGTCTCTGAACACCGTGGAGCAG
GTCCTTATGTGCCTGCACCTAGTTCATTCTGGGGGGATGTGGGAGAGCAT
AAGACAGGACACCCCAACCACGCCAACAACAGTGGTGCAGACGCCAATCG
AATCCCTCCTGGTTGCGCATTTTCACATTCATATCCCGTTACCATCATGC
CTGAAGGCAGTTCGTGCCTACCCCGTTTTTAGGGTGGCAGTGGCGTCTTT
GGACTTTATCCTTCTCGCCGCGGCTCTCCTGCAACGCCCATAGCTAGGTA
TTCAAGACGGGATGCGTCCTCACCGGCAAATACCTTCAATGTTGGGCGGA
AGGTTTGGACGCAGCAGTCCCTGCATCAGCCGCTACAATGGCAAACAAGT
AGAGACGGCGAGGGGGGGCGAAGCGCGCCGAGGTTCAACGTGGGGTAGCA
GTCCGAGCAGGTAGTTAAACGTAATGTCGTCTGTGAGTGGTGGCCATGTG
CGAGGGGTATAAGTTTTTTTTTCAATTAAATAAATCTGTGACCCAGCACA
AGAGGGCGTGCTCCAGGAGGGGTCCGGGAGCGGTCACCCCCGCCGGCACG
GCTGCTGTGTCCAAGCACGACAGGCACTGTGACTAAGCGAACAATCGGTT
CTCTACAGTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig648:230305..233915+

>mRNA_F-serratus_M_contig648.17425.1 ID=mRNA_F-serratus_M_contig648.17425.1|Name=mRNA_F-serratus_M_contig648.17425.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig648:230305..233915+ (Fucus serratus male)
ATGGACCTTGCCGCCTCTACTCCTTTCGTCGTCCAAGTGCGTGATGCCGG
GCTAACTGCGGGTCAACGACGTTCCATCTGGGGTCGCCGGTCAGACATTT
ATCCTAATCAGCACGCCCCTCGCATCCAACGCTCCTGCGGTTGGTCTATA
TGCGGTGTGGGCAACGCTAACAGCGCGCTAGAGTTGGGAGCAGCGCCTTC
CGACCACAACATTCCACAGTCCCCCGAGAAGACATTTTCCAATGACATGT
TCGGAATGATGGCCCCCTGCTGGCGACTTTTGGAAAGAACTAAGGCACAC
CTGGACAAGATGGACCTTGCCGCCTCTACTCCTTTCGTCGTCCAAGTGCG
TGATGCCGGGCTAACTGCGGGTCAACGACGTTCCATCTGGGGTCGCCGGT
CAGACATTTATCCTAATCAGCACGCCCCTCGCATCCAACGCTCCTGCGGT
TGGTCTATATGCGGTGTGGGCAACGCTAACAGCGCGCTAGAGTTGGGAGC
AGCGCCTTCCGACCACAACATTCCACAGTCCCCCGAGAAGACATTTTCCA
ATGACATGTTCGGAATGATGGCCCCCTGCTGGCGACTTTTGGAAAGAACT
AAGGCACACCTGGACAAGGACCAGCTTGAGTACATGAGGGGACTACTCCT
TACACACGCCAAGAAGCCAATGAGAAGGGACCAGGACCAGCTTGAGTACA
TGAGGGGACTACTCCTTACACACGCCAAGAAGCCAATGAGAAGGGACCAG
CTACTCGAGAGGGCTGAGAGCTGCCTGCAGAAGCAAGGCCACATCTTGGC
CGCCTTTGTCATCTACTCGAGAGGGCTGAGAGCTGCCTGCAGAAGCAAGG
CCACATCTTGGCCGCCTTTGTCATGGTGTTCGACGGGATCGACCCACCAC
CTTCAATGTCCCTGTGTCCGGCGAAAAAGAGGCAAGCTGGTCCCAGTCCC
AGCTCTGCTCCAAGAAAAGCGACGACGTTTACCTCAACGAACTGCCCCCC
AGCTGCCGTCTCTGAACACCGTGGAGCAGGTCCTTATGTGCCTGCACCTA
GTTCATTCTGGGGGGATGTGGGAGAGCATAAGACAGGACACCCCAACCAC
GCCAACAACAGTGGTGCAGACGCCAATCGAATCCCTCCTGGTTGCGCATT
TTCACATTCATATCCCGTTACCATCATGCCTGAAGGCAGTTCGTGCCTAC
CCCGTTTTTAGGGTGTTCGACGGGATCGACCCACCACCTTCAATGTCCCT
GTGTCCGGCGAAAAAGAGGCAAGCTGGTCCCAGTCCCAGCTCTGCTCCAA
GAAAAGCGACGACGTTTACCTCAACGAACTGCCCCCCAGCTGCCGTCTCT
GAACACCGTGGAGCAGGTCCTTATGTGCCTGCACCTAGTTCATTCTGGGG
GGATGTGGGAGAGCATAAGACAGGACACCCCAACCACGCCAACAACAGTG
GTGCAGACGCCAATCGAATCCCTCCTGGTTGCGCATTTTCACATTCATAT
CCCGTTACCATCATGCCTGAAGGCAGTTCGTGCCTACCCCGTTTTTAG
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