mRNA_F-serratus_M_contig648.17420.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 177 bits (448), Expect = 8.070e-47 Identity = 92/229 (40.17%), Postives = 129/229 (56.33%), Query Frame = 1
Query: 94 SILDEETGGTGSSRITACNFDGNNATEGGAIYSAEGSNEVVDCSFTRNYAVVRGXXFLRSGNLDALTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNLFFCASGEYGLEGNDDEFEDLDYCRWDVVCSGCTTSQCDVPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGSG 780
S+ D++ G+GS T C F GN+A +GGA+YSA G + + DC F N AV G +L SG L L +N ++C+SG+YG E E E CR+ VVCS C S D P + +V+++ VP+CE GV T G GG+T+ L+L+ G+YRTS +S+ VL+CY+E++C GG++ + YC+EGY G YCA CD GY SG
Sbjct: 439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASG 667
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.270e-28 Identity = 61/134 (45.52%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 391 NLFFCASGEYGLEG--NDDEFEDLDYCRWDVVCSGCTTSQCD--VPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGSG 780
N F+C GE+G E + D F D CR+ VCS C S+CD + ++VD T+P CEE PEG T G T+ TL+++PGFYR+S+ S ++ EC+ +++C GGS YC EGY GPYCA C GY G
Sbjct: 514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCA-SECDSELESAAELVDAETLPTCEEAPEGSRTTRRGA-TLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPG 645
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 119 bits (298), Expect = 9.160e-27 Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 391 NLFFCASGEYGLEG--NDDEFEDLDYCRWDVVCSGCTTSQC--DVPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGSG 780
N F+C GE+G E + D F D CR+ VCS C S+C ++ ++VD T+P CE PEG T G T+ TL+++PGFYR+S+ S ++ EC+ +K+C GGS YC EGY GPYCA C GY G
Sbjct: 490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCA-SECGSELERTAELVDADTLPTCETAPEGSRTTRRGA-TLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPG 621
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 112 bits (279), Expect = 3.010e-24 Identity = 52/130 (40.00%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 397 FFCASGEYGLEGNDDEFEDLDYCRWDVVCSGCTTSQC--DVPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGSG 780
F+C G + E E E D CR+ +VCS C S+C ++ + + + D +P CE +PEG T GG T+ TL+++PG+YR+S S ++ EC+ E +C GG YC GY GPYCA C G+ G
Sbjct: 527 FYCEEGTFSTEV---EIEGEDVCRFGLVCSRCA-SECASELEDEVTVADPDLLPACEAVPEGAQTTSRGG-TLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSPG 651
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.110e-24 Identity = 66/217 (30.41%), Postives = 102/217 (47.00%), Query Frame = 1
Query: 121 TGSSRITACNFDGNNATEGGAIYSAEGSNEVVDCSFTRNYAVVRGXXFLRSGNLDALTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNLFFCASGEYGLEGNDDEFEDLDYCRWDVVCSGCTTSQCDVPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGY 771
+G + T C F+ N+A +GG S S V G +L SG L +L +N ++C SG+Y + ++DE R+D VC+ C S ++PE + + + + VP+CE I +G G+ G TV L+L P +YRTS SREVL+C++E++C GG + YC GY G + + +V Y
Sbjct: 209 SGPANTTTCVFERNSAEDGGKEPSTRSS-------------VGSGGAYLHSGLLVSLADTTFVGNRAGAAGLAVSSLGIIENLTDTTFESNTYYCQSGQYDIGADEDEVSGT--YRFDEVCTCCAVSNAEIPESMVVANNAFVPICETIMKGA--SGNAGATVAALELDPDYYRTSADSREVLQCHQEEACMGGVETSEYCASGYEGAFSSVVNVVY 408
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A7S2QUQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUQ2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 8.480e-10 Identity = 47/135 (34.81%), Postives = 62/135 (45.93%), Query Frame = 1
Query: 403 CASGEYGL-EGNDDEFEDLDYCRWDVVCSGCTT--------SQCDVPEG-IDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGS 777
C G++ EGN +C D V G TT S C+ G +D+ ++ V E + E + GM V + L GF+RTS S ++LEC E C GGSN C G+ GP CA C GY S
Sbjct: 1499 CEKGKFAEGEGN----TGCTFCDDDKVLQGSTTRSVGSTSVSDCECEAGELDLGAKTCEAVFEGVEEEI-----DGMDVTNMTLKGGFWRTSANSTQILECLSEAHCVGGSNVALQCATGHTGPLCAVCQKGYAS 1624
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A7R9U892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U892_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.470e-9 Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 553 VCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYA--GPYCAACDVGY 771
VCE EGV G + L L+PGF+R+ +QS +V EC +C GG+NA+ YC G+ PYCAAC G+
Sbjct: 13 VCETCGEGVVCNDFGNK-LTNLTLLPGFWRSGRQSTDVRECIERDACVGGTNADDYCAPGHDPNSPYCAACLDGF 86
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 4.220e-8 Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 556 CEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGY 771
C EI EG+ G+T+ETL L PG++RTS S ++ EC +C GG++ N C EG+ GPYC C Y
Sbjct: 181 CVEIVEGI-RNDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGGNSTN-MCREGHTGPYCNVCVENY 250
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: A0A7S2QVJ1_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVJ1_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 4.650e-8 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 556 CEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGY 771
C EI EGV G+T+ETL L+PG++R S S +V EC ++C GG N+ C EG+ GPYC C Y
Sbjct: 185 CVEIVEGV-RNDIQGLTLETLALLPGYWRVSNTSDDVRECLVAEACLGG-NSTEICREGHNGPYCNTCIENY 254
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 3.910e-7 Identity = 38/132 (28.79%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 385 RTNLFFCASGEYGLEGNDDEFEDLDYCRWDVVCSGCTTSQCDVPEGIDMVDESTVPVCEEIPEGVYTGGSGGMTVETLDLMPGFYRTSKQSREVLECYREKSCRGGSNANHYCEEGYAGPYCAACDVGYGSG 780
R N C + L+ + D+ + D+ C GCT +++ +CE+ + + G T+E+L+L PG++R+S +SR++ C R SC GG+ + C GY G CA C Y G
Sbjct: 514 RDNALLCDDDRFFLDWTNVSAYDIACDQCDLECEGCT-----------IMNPDKALLCEDAFPNTDSLTADG-TLESLNLAPGYWRSSNKSRDIRACPRATSCPGGTEGS--CAVGYDGTLCAECAEDYSLG 631 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig648.17420.1 >prot_F-serratus_M_contig648.17420.1 ID=prot_F-serratus_M_contig648.17420.1|Name=mRNA_F-serratus_M_contig648.17420.1|organism=Fucus serratus male|type=polypeptide|length=260bp GVYASSAVIALTGATFLENQGARGGGVASSDSILDEETGGTGSSRITACNback to top mRNA from alignment at F-serratus_M_contig648:993..3182- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig648.17420.1 ID=mRNA_F-serratus_M_contig648.17420.1|Name=mRNA_F-serratus_M_contig648.17420.1|organism=Fucus serratus male|type=mRNA|length=2190bp|location=Sequence derived from alignment at F-serratus_M_contig648:993..3182- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig648:993..3182- >mRNA_F-serratus_M_contig648.17420.1 ID=mRNA_F-serratus_M_contig648.17420.1|Name=mRNA_F-serratus_M_contig648.17420.1|organism=Fucus serratus male|type=CDS|length=1560bp|location=Sequence derived from alignment at F-serratus_M_contig648:993..3182- (Fucus serratus male)back to top |